transcript:BL95789_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95789_evm0
Unique Nametranscript:BL95789_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95789_evm0

>transcript:BL95789_evm0-protein ID=transcript:BL95789_evm0-protein|Name=transcript:BL95789_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=618bp
MEEGEESETPRTLIRGVLAHLPVSDSAVKAAAGTSRERRSSVVDALRASA
SAAKKRRISTASPRTLIRGVLETQPTPENTTEEPARKVARVTPQVRGQPT
PSHGGSGQRAGATFASPSGSAPRSLRQSVRRSARISTSSPGSAYFTRRQV
GRVSSLLTPQDDSTPHTLLRNVLQVLPVESPVTHSQAEVSLLEESIGTPT
VEEPVREQVQVQQSAQPTPEIDLSLTVPRRGTRHTHRTHITLEQFAAGVE
QRLASQEAQTEEESADPTGDSADQTDAAVSVEETRTPAGDESRHIVTAVD
VDETDSAQPTSSQETTSQTEERASSCDGDDEMSSQQDRNAGSAEPDFIFT
QETQPDEHTSSQSQGESDEEDFIPETQMSVQQDDHPSAQDADQTEGPSSA
AGNDVFDGERSADQTGEILSDDDMFEDRAAEREDENQNEEVEEDDMIEIE
EDERVEDDDMSEEENIGPGDEVMVPSGAEHARSPQKVLAQQQVRPVRQKR
RKAPPSNKSLPRAYTKSIFTNFCKRPVSKDAMEEVEKGCEKFFQNLSKDL
MVYTRHGHRQTIQEADVELLMRRQGLVTEKQSLNSLIEKYLPLEDREQLI
PMATSGNKLVPQNSKGNK
Run BLAST on NCBI

mRNA from alignment at Sc0000123:312341..316840+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95789_evm0 ID=transcript:BL95789_evm0|Name=transcript:BL95789_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=4500bp|location=Sequence derived from alignment at Sc0000123:312341..316840+ (Branchiostoma lanceolatum)
ATGGAAGAGGGTGAAGAAAGTGAAACTCCCCGTACCCTGATACGAGGGGT
GCTGGCCCATCTCCCCGTGAGTGACAGCGCAGTCAAGGCAGCAGCAGGGA
CCAGCAGGGAGAGACGGTCATCCGTGGTCGATGCACTGCGTGCTTCAGCA
TCGGCAGCGAAGAAAAGAAGGATCAGCACAGCCTCGCCACGAACACTGGT
AAACTTGTCTTACAATCACCATGTACTCAGTGATTGTGGCAGATTGTCTG
AAGATATGAAGTGAAGATATTTGTTTTTCATTCTATGATGTTTGCTGTGA
TTATCTATTAAATTGTGTACCAGTGAAATGGATATCATAGCCAAACACTT
AACCTGGTTACCTCTTATTCATCAACTACAAATTAATCAGACAAGAATGT
TAGGGTCAAAAAGTCTCTGTGAAGCGTACAAAGGGTCTTTGAAGTTTGAC
CAGTCAATGTGATGTGACAAATCTATCACAGTATGTGTACCTGAGGACCT
TATAGTGAAAATTACTTAGAGTGACAGAAGACCTTCCATTGTCCCAGATA
CGTGGGGTTCTGGAGACGCAGCCCACGCCTGAGAACACCACAGAGGAGCC
AGCCAGGAAGGTTGCCCGGGTAACACCACAGGTCAGAGGTCAACCCACCC
CGAGCCATGGTGGATCAGGACAGAGGGCAGGGGCAACGTTTGCTTCACCA
TCAGGTGCATACTATTTTCCTTTTCAGAGCAATGTTCGTATGTGCAAACA
TTTCTGTATCTTTTGATCAACAGAAGCTAACTAGCCTTTCTGCATAGCAC
ATCATCATCTAAGGCTCGCAGCAACAGTTAAGATTCTAATCAGTTCTGAA
TCAGTACTGTACTCTATTTACTGTCCTGTATTTTAGGTTCAGCCCCTAGA
AGCCTTCGTCAGAGCGTGCGAAGGAGTGCCCGTATCAGCACCTCCAGCCC
AGGGTCGGCTTACTTCACCAGGAGGCAGGTGGGGAGGGTGAGCTCACTGT
TGACTCCGCAGGATGACTCCACACCTCATACCTTGCTGCGCAACGTGCTG
CAAGTCTGTAAGTATGACACCATTTATTCTTGATGATTTCTAACAAAATA
CAATGTAAGCTTTCATTCTGTAATATGATTTCGTCCAAATAAATACTAGT
CCTATCTAAGTGCTTCAGTTCCAAGTTTCCATCCTCATCAAAAGGCTTGT
AATTTTCCTGTGCAGTGCCAGTTGAGAGTCCTGTTACACACAGCCAGGCT
GAAGTATCCCTGCTTGAGGAAAGTATTGGTACCCCAACAGTGGAGGAACC
AGTGAGGGAGCAGGTACAGGTGCAACAAAGGTAGATATTTTCACCATCTG
ATAAATAGGGAGGGAAGAATTTGTATGCCGAATTATTACAGTAATGTTAT
CACTTCATTTCATGGTTTCTGATTGCACAGTCTTGCAAGAAATTTGCAAC
TGTGCCACTTGCAAGCTTAGAAATGAATGAAAAATATCTCATTTTCTGCA
TGTATAGTTCCAGTGCCCAGCCTACCCCTGAGATCGACTTGTCCCTGACA
GTGCCACGGCGTGGTACTCGCCACACCCACAGGACACACATCACACTGGA
GCAGTTCGCTGCAGGGGTGGAGCAGAGACTGGCAAGTCAAGAGGCGCAGA
CTGAAGGTATTCGGCAAACTTTGATACAGTATGGAAAATTCAAGATCGAC
AGTACAATTTACAATTTTGGCTAGCTTCGTAGCAGTTTTGAAGAAGATTG
TCATTTTACTGAAGTGACTACAAGGGTGCAAGTAATCTCAGATCAATGTA
TACTGATGTAAGACTCAAAGAAATTTCTTATGGCTTTTGTCACAAAGATC
AGGCATATCTTTGTCATAAAAGAACTGAATAAATGCTCATTCAAATTTCA
ATATGACATGAGCATTGAATACATGTACGTATATTTACTATTTAAATTTT
AGGAGAAAGCCATGAAAGTATGATACATGAGTAGTAGATACATGTACATG
TATTTGATAGAAGTATTTTAGTAGAAAGCTACAACACAATCGTGTATCCT
GATTTTTGTTCTACTGTTTTATGTTTAGAAGAATCAGCAGACCCAACAGG
TGACTCAGCAGACCAGACAGATGCAGCAGTGAGTGTAGAAGAGACAAGAA
CTCCTGCTGGTGATGAGAGCAGACACATTGTGACAGCTGTAGATGTAGAT
GAAACAGATTCTGCACAGCCGACTAGTTCACAGGAGACCACATCACAGAC
TGAGGAAAGAGCCAGCTCATGCGATGGTGATGATGAGATGTCGTCTCAAC
AAGTAAGGAGCCATTTTTGCTTTGTGTTGTTCTGTCGAAGAGCTGAACAG
GCCATTGCTAGTTAACCTTTACACTTTGACGTAGTAGTTTGGCTACCAAT
TGTCTATTGGTAACAGGGCTAGGCAGCAGCCATATGGTCAAAAGAAGGGG
ATTGTGTAAAGGTTTTGATGCGAGGTGGTAATTAGAATGAAAGGTGGAGA
CGGGAGGGAAAAGGTTCTTGGCTGCACTTTGATAGTTTGAATGATATAGA
CATTAAAATTGTCACCCTTTGCTTTCACTGCTTAAAGAGCAGTTCATATA
GATTGGACATTATTAAAATTACAGCTTATTACTTTTTATCACAATGAATG
TTAAGTCTTCACAGTTATAAGAAATTTTCTTGGTCTTTTGTTTTTCAGGA
CAGAAATGCTGGCAGTGCGGAACCTGACTTTATATTCACTCAAGAAACCC
AACCAGACGAGCACACCTCGTCCCAGTCCCAAGGAGAGTCTGATGAAGAA
GACTTTATACCAGAGACTCAGATGTCTGTCCAGCAAGATGACCATCCTTC
GGCTCAGGATGCTGATCAAACAGAAGGTCCGTCCTCAGCTGCAGGCAACG
ATGTCTTTGATGGTGAGAGGTCAGCTGACCAGACTGGAGAGATTCTGTCA
GATGATGACATGTTTGAGGACAGGGCAGCAGAGAGGGAGGATGAAAACCA
GAATGAAGAAGTAGAGGAAGATGACATGATAGAAATTGAAGAAGACGAAA
GAGTAGAAGATGATGACATGTCTGAAGAAGAGAATATCGGACCTGGAGAT
GAAGTTATGGTTCCATCTGGTGCAGAGCATGCAAGGTTAGAATATGTTTC
ACACAACTATTTGAAATTCAGATAACCTTTTGAATCTATATTGAATATTG
ATTAGTTGATCTACTTCACTCAATCTTCAGGCTCATGTTTCACAATCTTT
TTAAGTTGTACTCAGTTACACCATCAAATTTCAGGTCTCCACAGAAGGTA
CTGGCCCAGCAGCAGGTGAGACCTGTACGTCAGAAACGCAGAAAGGCACC
ACCATCCAATAAATCCCTCCCACGTGCCTACACCAAGAGTATTTTCACCA
ACTTCTGTAAACGTCCTGTGTCCAAGGATGCCATGGAAGAAGTGGAAAAA
GGGCAAGTGGAAATAAATGAATAACTGTTTTATGTTTTTACAAATAAAAC
AAAATAGGAATAATATAAAGTGCAATCTCAACAGTGGGACTTGATGTAGT
ACAAATGTCTTGACATTTNAACAGTGGAACTTGATGTAGTACAAATGTCT
TGACATTTTCCTTCCACAGTTCTCCAAAGAATAGTTTTCAGACCAGACAA
CTACTAGTAGTACTAGTAGTTGCACACAATATTTGAAACTCGTCACATGA
CTCGATATGGAGTGGTCATGGGTTTGATTCCTGGCTAGACATCGTGTCTT
TGGGAAAGGCACTTAACACGATTTCCCTCACTAGACCCAGATGTAAAAAT
GGGTACCTGACTTTGGTTGGTGAGGTAAAGGTGGTGGAAGGAGAGGGATG
GGCCCCGCCTTCCAATTCCATGCCCTAGACACAGTGGATAAGAACACACT
GCCACGGACCCAAAGCTACCTTTACCATCATCTTATATGAAATCACGTTA
ATTCTTATTCTGGTCTTGTTTCAGCTGTGAGAAGTTTTTCCAAAACCTGT
CCAAAGACCTGATGGTGTATACCCGTCATGGACACAGGCAGACCATCCAG
GAGGCTGATGTAGAGCTACTCATGAGGAGGTGGGTACAAAATATCTCTTC
TCTAACTAGTACTATATACTGTTCTTTCTCTGTGGTTCCAAGACTTGTGT
AACTCATTATAACTTACCATTTTGTACCTTTATTCTACAACTATGTACAT
TTTGTACTACATAGTTGAGAATACCTATACAGACAGAATAAATGTTATAG
GTAAAAATTCACATTCTTAATAAAAAGTGCACAAAAGTCCTCCCTGATTT
GCTTCACTTACGTTTTAAACCTCTTTGCCAACACATCTGTATTGCTGTTT
CCTGTTTGCAGGCAAGGCCTTGTGACAGAGAAGCAGTCACTGAATTCGCT
GATAGAGAAGTACCTCCCCTTGGAGGACAGGGAGCAGCTAATCCCCATGG
CTACCAGTGGTAACAAACTCGTCCCACAAAATAGCAAAGGAAACAAGTAG

Coding sequence (CDS) from alignment at Sc0000123:312341..316840+

>transcript:BL95789_evm0 ID=transcript:BL95789_evm0|Name=transcript:BL95789_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=1857bp|location=Sequence derived from alignment at Sc0000123:312341..316840+ (Branchiostoma lanceolatum)
ATGGAAGAGGGTGAAGAAAGTGAAACTCCCCGTACCCTGATACGAGGGGT
GCTGGCCCATCTCCCCGTGAGTGACAGCGCAGTCAAGGCAGCAGCAGGGA
CCAGCAGGGAGAGACGGTCATCCGTGGTCGATGCACTGCGTGCTTCAGCA
TCGGCAGCGAAGAAAAGAAGGATCAGCACAGCCTCGCCACGAACACTGAT
ACGTGGGGTTCTGGAGACGCAGCCCACGCCTGAGAACACCACAGAGGAGC
CAGCCAGGAAGGTTGCCCGGGTAACACCACAGGTCAGAGGTCAACCCACC
CCGAGCCATGGTGGATCAGGACAGAGGGCAGGGGCAACGTTTGCTTCACC
ATCAGGTTCAGCCCCTAGAAGCCTTCGTCAGAGCGTGCGAAGGAGTGCCC
GTATCAGCACCTCCAGCCCAGGGTCGGCTTACTTCACCAGGAGGCAGGTG
GGGAGGGTGAGCTCACTGTTGACTCCGCAGGATGACTCCACACCTCATAC
CTTGCTGCGCAACGTGCTGCAAGTCTTGCCAGTTGAGAGTCCTGTTACAC
ACAGCCAGGCTGAAGTATCCCTGCTTGAGGAAAGTATTGGTACCCCAACA
GTGGAGGAACCAGTGAGGGAGCAGGTACAGGTGCAACAAAGTGCCCAGCC
TACCCCTGAGATCGACTTGTCCCTGACAGTGCCACGGCGTGGTACTCGCC
ACACCCACAGGACACACATCACACTGGAGCAGTTCGCTGCAGGGGTGGAG
CAGAGACTGGCAAGTCAAGAGGCGCAGACTGAAGAAGAATCAGCAGACCC
AACAGGTGACTCAGCAGACCAGACAGATGCAGCAGTGAGTGTAGAAGAGA
CAAGAACTCCTGCTGGTGATGAGAGCAGACACATTGTGACAGCTGTAGAT
GTAGATGAAACAGATTCTGCACAGCCGACTAGTTCACAGGAGACCACATC
ACAGACTGAGGAAAGAGCCAGCTCATGCGATGGTGATGATGAGATGTCGT
CTCAACAAGACAGAAATGCTGGCAGTGCGGAACCTGACTTTATATTCACT
CAAGAAACCCAACCAGACGAGCACACCTCGTCCCAGTCCCAAGGAGAGTC
TGATGAAGAAGACTTTATACCAGAGACTCAGATGTCTGTCCAGCAAGATG
ACCATCCTTCGGCTCAGGATGCTGATCAAACAGAAGGTCCGTCCTCAGCT
GCAGGCAACGATGTCTTTGATGGTGAGAGGTCAGCTGACCAGACTGGAGA
GATTCTGTCAGATGATGACATGTTTGAGGACAGGGCAGCAGAGAGGGAGG
ATGAAAACCAGAATGAAGAAGTAGAGGAAGATGACATGATAGAAATTGAA
GAAGACGAAAGAGTAGAAGATGATGACATGTCTGAAGAAGAGAATATCGG
ACCTGGAGATGAAGTTATGGTTCCATCTGGTGCAGAGCATGCAAGGTCTC
CACAGAAGGTACTGGCCCAGCAGCAGGTGAGACCTGTACGTCAGAAACGC
AGAAAGGCACCACCATCCAATAAATCCCTCCCACGTGCCTACACCAAGAG
TATTTTCACCAACTTCTGTAAACGTCCTGTGTCCAAGGATGCCATGGAAG
AAGTGGAAAAAGGCTGTGAGAAGTTTTTCCAAAACCTGTCCAAAGACCTG
ATGGTGTATACCCGTCATGGACACAGGCAGACCATCCAGGAGGCTGATGT
AGAGCTACTCATGAGGAGGCAAGGCCTTGTGACAGAGAAGCAGTCACTGA
ATTCGCTGATAGAGAAGTACCTCCCCTTGGAGGACAGGGAGCAGCTAATC
CCCATGGCTACCAGTGGTAACAAACTCGTCCCACAAAATAGCAAAGGAAA
CAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95789gene:BL95789Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95789_evm0transcript:BL95789_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95789_evm0-E1BL95789_evm0-E1-1564476830-325688Branchiostoma lanceolatumexon
BL95789_evm0-E2BL95789_evm0-E2-1564476830-325690Branchiostoma lanceolatumexon
BL95789_evm0-E3BL95789_evm0-E3-1564476830-325692Branchiostoma lanceolatumexon
BL95789_evm0-E4BL95789_evm0-E4-1564476830-325694Branchiostoma lanceolatumexon
BL95789_evm0-E5BL95789_evm0-E5-1564476830-325696Branchiostoma lanceolatumexon
BL95789_evm0-E6BL95789_evm0-E6-1564476830-325698Branchiostoma lanceolatumexon
BL95789_evm0-E7BL95789_evm0-E7-1564476830-325700Branchiostoma lanceolatumexon
BL95789_evm0-E8BL95789_evm0-E8-1564476830-325702Branchiostoma lanceolatumexon
BL95789_evm0-E9BL95789_evm0-E9-1564476830-325704Branchiostoma lanceolatumexon
BL95789_evm0-E10BL95789_evm0-E10-1564476830-325706Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000123genomeSc0000123:312341..316840 +
Properties
Property NameValue
Transcript idBL95789_evm0
Biotypeprotein_coding