transcript:BL95793_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95793_evm1
Unique Nametranscript:BL95793_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95793_evm1

>transcript:BL95793_evm1-protein ID=transcript:BL95793_evm1-protein|Name=transcript:BL95793_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=205bp
MATAAVPEFDDLEPMDFQEEMLGSSNSSIADTKFDVTVGYIEEIIMDDEF
QDLQNNFLDKHYIEFEDTEENKFVYTDIHKEWVDTIEKYLETNLARKMPG
FHMHEFAQALESRKDEVCGEIFDMLVSFTDFLAFKELMLDYRAEKEGRSI
DLLEDLVITSMSKPAGGPAAAGAVGGGSRQGSTQPQLAVQPATGGSKHSS
KHRVK
Run BLAST on NCBI

mRNA from alignment at Sc0000123:560756..564664+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95793_evm1 ID=transcript:BL95793_evm1|Name=transcript:BL95793_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=3909bp|location=Sequence derived from alignment at Sc0000123:560756..564664+ (Branchiostoma lanceolatum)
ATGGCGACCGCAGGTAAGATGATTTTCCGTTTGTTTACCTGTTGTTACCA
GAGTATTGAACTTCCTACGTCTTTTACAATGGGTTTAGACTAACTTAAAC
AGATTCAAATCGTACCAAACAAGCGACAAATTTGTAAGAAAGCTCAATTG
GGTTTGTAAATCAGAAGGATTTCCATTCAGCAATCGATGAATCATGTCTG
AGCTGTGCACAGGTGTGTGCCGTTCGAACAAAATCATATAACGATCGGGT
GTAGAGTGTCACTTTAAAACAATTAACCTGTCAACAGTGACAGCTACCGG
CATTTAACTGTCCACTGGTCATCTTAAGGTTCAGCAGATACAGTCTGTGT
TTGCAGAAGAGCCGTAGACAAGATTTTCCTCACGTCTTCGAAGAAGAATA
TAATTTTGTCCCCTTTTCAAATCCTATCTATCGACACGCAGTTACAGTAA
AGGTAAAAAAGTTTTTTTTCCCGTTGAAAGTCGTCGCCACCAGTCTCTTA
TGTCCCTTCTCCGCCTCCCTACAGCTGTACCAGAGTTTGACGACCTTGAA
CCCATGGACTTCCAGGAGGAAATGTTGGGGTCTTCCAAGTAAGAAATCTT
TCTTAAGTTAAAGTTAAACAGAAAAGAATAAGATAAAGTAAATATGACAA
GATAACATAAAATTTACCTTTGTTGAATTTGATAATTGATTCATTTTGGC
AAAAAATGCATGCCATTGCCATACTGTTAAGTGCACAGTGTTATTATTGA
ATTGTTTTATATTCTGCAAGGAAATAGAAGTACATTATTCTTTGTAGAGT
ATTTTAGTCCACCAGCAAATTGCCCACTGTAAAGCTTTGTCTGCACATGT
ACATATTTTTGTGTTGCCTGTTGAAATTTGAAGTTCATATTAAATCCTTT
CACTTGCAGCTCTAGTATAGCAGACACAAAGTTTGATGTGACAGTCGGTT
ATATTGAAGAGATCATCATGGGTAAGTTTCTTTCTCATTCACATATGAAT
TATTAATTCAGCATTATCATTTTCTACTCCCATTGGGCCATTTATGGCAA
TTTCATTCTGGTTCTTGGGTTCTAGATACACACTAATAGCATATACCGTG
TAATGTGGAAAGGTGCAAAGTAAAAAGATCAGGACTAGGTAATGAATTGG
ATGTTGAAAGACAGATCATGCCATGAGTCTGGGACACAGTACATGTATAT
ACAAAGACAACTGAGCCCTCAAGGCCACATATTGTTTGTACCAGCGCAAA
ACCTAAAATTTTGTACATTACGGGCATGGTGCACATGATGTTCAGCTGTA
TGGCCTCTCATCTATGAATTATTGAGGAGTTTATTGACATATTAATAAAC
AGAAGCTCATCAAATCACATTTTGGCTTTTGTGTCATTTGAACAGTTGTT
TGTTATGATATTCATGCTGTTATTATTTTGTTGCTATAAAAATGTTGGTA
ACATTTCCAAGATCCTTGTTATATTCTTCATATCTTTTCACAGATGATGA
GTTTCAAGACCTGCAGAACAATTTTCTGGACAAGCACTACATAGAGTTTG
AGGACACAGAAGAGAACAAGTTTGTGTACACAGACATTCACAAGGAATGG
GTATGTTTATGCAAGGAGGTTATAGACATGGTATCTGTATCTGTATCTAC
ATAGCCAGTATATCCGCCCCTCTGCGAAAAACACCAGGTTCGCAGGTAAG
CAGCGTGGCAGCAGCTGGTTATATTACACTGAACAACTTGTCTCACATAA
CCATTGCACAGCTAACTCCATGCATTGTTTAAAGCTATCTAGTGAGGATG
CTCCTACAGTACCTGATGACACTGACAATTGTGTATACTTGATGATGATA
GATCATGACATAGATGGTTGTCATTTAGTCATTGATACCACTCCATCTCT
TACTAGTCTTAGGCATAGTGTATGGCCCTAGATGTACATGACCTTGTTTC
AGAAGGTATTCAGTTAGTGTTACTGAAGTGAATTGCCACACCCTGTCAAA
GTGCCATCATTTTCCTATATGTTCCTTTCAGGCATGCATAAGTCATGAAT
AATTAATCAGGCTATCATTGCTGATGCTAGGCATTTCATTGCCCAGGCCT
TTGATGTTAGGCAGTTCATTATTTATTAAGACTCAACCAAACTGCAATTC
TATTGATAATCAATGATTGTCATACCTACTCGAATAACTTTTTTAATTCT
AAGATCAGTCCTGTGTTTTTCTTGAGAATATTTCTTTTGTATAAAAGGTC
ATCATAAGATATCCTTAAAATGTGAATTGTGCAGTGAATGTTTCCATAAG
CAAGTAAGCCCGAGGGACCCTAATGCTAATGGTTGATGACTTGATTTCTG
CCACAGGTTGACACAATAGAAAAGTACCTTGAAACAAACCTCGCCAGGAA
GATGCCAGGGTTCCACATGCATGAGTTTGCACAGGCACTCGAGTGAGTTT
GCTTTCTTCAACTTCTTGTATGCTATGGTGTCACTTAAATCAAAAGGTTG
ATGAAGGCTTTACTACAGCAGAAAGTAAAGTTGTAAAAAAAACAGACAAA
AAAGTCAGAAATAATTCAAAGTACATTGAATACTTGTATGTTTGAATTTC
ATTTCATCAAAAGAGAAGACTTCAAATATGCTTTAGGGAATAATATATTC
TAAAGTGTTCCAATGACTGGTTTGAGGTCATCTTCCCATTTGTCCGGGTA
AGGAGGTTATAACCTCCTTGGTCTAGGCAATAACCTCAAATGAAGTATGC
ACCCCAACATTGGCAACGACTGGCAACACCTTTTGGATTTTGTGCATACT
TTAATTGGGAATTTACAGTCAGAAGAATACATCAATTTTATAGCCCAGTA
ATTAGGATTTCTCCACTAATATTTTTACAGGCCTTCGGGCCTAAAGGTGT
CAAAGTGAGAAGAAGAAGATTTGTGATATATGTTTCAGGTTGTTTTGAAT
AAGATATAGAATATACAAAGAAAGATTGCATTGGTAGGTTCAATTTCTTC
AGCAGGACAAGATTACGCTCAGTTAAACACCTATACCCTGGGTCATGTGT
GTTTCACAGGTCCAGAAAAGACGAGGTTTGTGGGGAGATCTTCGACATGC
TGGTGTCCTTCACCGACTTCCTGGCCTTCAAGGAGCTCATGTTGGACTAC
AGGGCGGTAAGCAGTCCCAGTTGTTCTCATGAAACATTTGTTCTTATGAA
ATGACCAATGTTGCAGGGATCTCCCTAAAGAATGCAACAGTGGCGCTCCT
CCATCCTGTTCTCATCCCAGCTTCATCCTGTTGATTTTCATTAATTGTAG
ACAAGATGTAAAGCTGAAGTTGCAGGAAATGACTTCCATTTGTGTCTGGA
AAAGGCAAAATGCAACAGACCTTCCAGACACACATCTTACATGCTTGGCA
CCCTCCCCCATCCTGCTCTATATTTCTGGGGAGATCCCTGAATTTTGATT
GTGATATGAACATAAAAGCCTCAAACAGTCTATGGAGCTTAATTTGCTCT
CCAGAAAAGCACCTGGAAAAGTTGAGTTGACATGCTGGATAAAAATGTTT
CCCAGATAGAAATATGTTCTCCTATAAAGTGAGGGTATGGTTTTAAGGGT
GTCATGATAGGTTGGTCCCCAATGGTAGTTTTGGTAGTGTAGCTCCTTAA
TAGAAATGACATGAAACATTGTGGATTGCCTGCATATGTGACTGAATAGT
AAGTATTCTATCCATGACAGGAAAAGGAGGGTCGGTCAATAGATCTGCTG
GAGGATCTGGTGATCACATCGATGTCCAAACCCGCCGGGGGACCAGCAGC
AGCAGGAGCTGTGGGAGGAGGCAGCAGGCAAGGCAGCACACAACCACAGC
TAGCCGTACAACCTGCCACAGGGGGCTCCAAACACTCCAGTAAACACAGG
GTCAAATAG

Coding sequence (CDS) from alignment at Sc0000123:560756..564664+

>transcript:BL95793_evm1 ID=transcript:BL95793_evm1|Name=transcript:BL95793_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=618bp|location=Sequence derived from alignment at Sc0000123:560756..564664+ (Branchiostoma lanceolatum)
ATGGCGACCGCAGCTGTACCAGAGTTTGACGACCTTGAACCCATGGACTT
CCAGGAGGAAATGTTGGGGTCTTCCAACTCTAGTATAGCAGACACAAAGT
TTGATGTGACAGTCGGTTATATTGAAGAGATCATCATGGATGATGAGTTT
CAAGACCTGCAGAACAATTTTCTGGACAAGCACTACATAGAGTTTGAGGA
CACAGAAGAGAACAAGTTTGTGTACACAGACATTCACAAGGAATGGGTTG
ACACAATAGAAAAGTACCTTGAAACAAACCTCGCCAGGAAGATGCCAGGG
TTCCACATGCATGAGTTTGCACAGGCACTCGAGTCCAGAAAAGACGAGGT
TTGTGGGGAGATCTTCGACATGCTGGTGTCCTTCACCGACTTCCTGGCCT
TCAAGGAGCTCATGTTGGACTACAGGGCGGAAAAGGAGGGTCGGTCAATA
GATCTGCTGGAGGATCTGGTGATCACATCGATGTCCAAACCCGCCGGGGG
ACCAGCAGCAGCAGGAGCTGTGGGAGGAGGCAGCAGGCAAGGCAGCACAC
AACCACAGCTAGCCGTACAACCTGCCACAGGGGGCTCCAAACACTCCAGT
AAACACAGGGTCAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95793gene:BL95793Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95793_evm1transcript:BL95793_evm1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95793_evm1-E1BL95793_evm1-E1-1564476830-326182Branchiostoma lanceolatumexon
BL95793_evm1-E2BL95793_evm1-E2-1564476830-326184Branchiostoma lanceolatumexon
BL95793_evm1-E3BL95793_evm1-E3-1564476830-326186Branchiostoma lanceolatumexon
BL95793_evm1-E4BL95793_evm1-E4-1564476830-326188Branchiostoma lanceolatumexon
BL95793_evm1-E5BL95793_evm1-E5-1564476830-326190Branchiostoma lanceolatumexon
BL95793_evm1-E6BL95793_evm1-E6-1564476830-326192Branchiostoma lanceolatumexon
BL95793_evm1-E7BL95793_evm1-E7-1564476830-326194Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000123genomeSc0000123:560756..564664 +
Properties
Property NameValue
Transcript idBL95793_evm1
Biotypeprotein_coding