transcript:BL95794_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95794_evm0
Unique Nametranscript:BL95794_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95794_evm0

>transcript:BL95794_evm0-protein ID=transcript:BL95794_evm0-protein|Name=transcript:BL95794_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=163bp
MSYPGEGTHKMSMYGLKNWSPGEQKLQWQEYVRRESRLEKNHLATRGRLG
KPNIVLTEEMLKSNMTIYNNNKEHQEKGAYERLFNQESDYNSKLHRDDRQ
HTVGLNVHKEEISKPVPLRSSSQYGFLLNRECDPPMRGEYVRVAHVFKGF
YRDRGVNIPTSHD
Run BLAST on NCBI

mRNA from alignment at Sc0000123:44207..45439-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95794_evm0 ID=transcript:BL95794_evm0|Name=transcript:BL95794_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=1233bp|location=Sequence derived from alignment at Sc0000123:44207..45439- (Branchiostoma lanceolatum)
ATGTCGTATCCAGGGGAAGGAACGCATAAGATGTCCATGTACGGTCTAAA GAACTGGTCACCCGGCGAGCAGAAACTACAGTGGCAGGAGTACGTCAGGG TAGGCAGCAAAACAAACCTCCATAGAACGTACTTCTCTTCTAGTTCTAAT ATATAATGCCTCAATGCTGGTATGAAATAACAATGAACTCAACTAAAGTT TTCATAATCTGCGAGGAATGCAGGAATACTTTTGTTGCTTTTAGAAGAAA CAAACTTAAATGGAACAGTTAGCGGTAACAATAACAGTGGGTGATTAAGA CTACTTCTATCATTTCTAAACTGTCTCTTTAGCGGGAAAGTCGGCTAGAG AAGAACCACCTTGCGACGCGAGGGAGGCTGGGAAAGCCTAACATCGTACT GACCGAGGAAATGCTGAAATCGAACATGACCATCTACAATAACAACAAAG AGGTGGGTGGAGAAATGGAAAGTGTTATTACATGTGTACAGATACCAAAT GTGCCTGAACAAGATTGAGATCAAGAAGAGACAATTTCGGGTTAGATGAC ATTTCAATGTTACCGATGGCACGGACGTAGAGAGGGAACAGATTCTCAGT TTGCCATCAAAATGTTACGTCAAATCAAGAAGTCTCCTGCCTTGTTTCCC CTGCCAGCATCAGGAGAAAGGCGCGTATGAACGTCTGTTTAACCAGGAGT CTGACTACAACAGCAAGCTGCACCGTGATGACAGACAGCACACCGTGGGG CTCAATGTCCACAAGGAGGTAACCGTACTTTTCTTATCATTGATATCCAC CAAAAGACGTCATGCAGCAGGGATGATGGTTGCTTGGGTATTGCATTAAC ATTTGAGTTGTATTTGGCTCTGAAACAACGCTGATATGGGAAATTTCAGC GTTTCCAAGGTTACAAAATGTGTCCGTCTGTTCAAATGATGGCACATTCA GCACCAAGGACAGGACGAGCTAGTATTTGATCATACGTGACAATTTAACT TGAGTTGATTTATTGGCGTTTCTGGAGTTTTATAACAAGATTATATGTTC CAAATACGGTTTTATTTTCAGGAGATATCCAAGCCGGTGCCGCTGCGGAG TTCCTCTCAGTACGGCTTCCTGTTAAACCGGGAATGCGACCCGCCTATGC GGGGGGAGTATGTGCGAGTCGCGCACGTCTTCAAGGGGTTCTACCGTGAC AGGGGCGTCAACATCCCAACAAGTCATGACTGA

Coding sequence (CDS) from alignment at Sc0000123:44207..45439-

>transcript:BL95794_evm0 ID=transcript:BL95794_evm0|Name=transcript:BL95794_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=492bp|location=Sequence derived from alignment at Sc0000123:44207..45439- (Branchiostoma lanceolatum)
ATGTCGTATCCAGGGGAAGGAACGCATAAGATGTCCATGTACGGTCTAAA
GAACTGGTCACCCGGCGAGCAGAAACTACAGTGGCAGGAGTACGTCAGGC
GGGAAAGTCGGCTAGAGAAGAACCACCTTGCGACGCGAGGGAGGCTGGGA
AAGCCTAACATCGTACTGACCGAGGAAATGCTGAAATCGAACATGACCAT
CTACAATAACAACAAAGAGCATCAGGAGAAAGGCGCGTATGAACGTCTGT
TTAACCAGGAGTCTGACTACAACAGCAAGCTGCACCGTGATGACAGACAG
CACACCGTGGGGCTCAATGTCCACAAGGAGGAGATATCCAAGCCGGTGCC
GCTGCGGAGTTCCTCTCAGTACGGCTTCCTGTTAAACCGGGAATGCGACC
CGCCTATGCGGGGGGAGTATGTGCGAGTCGCGCACGTCTTCAAGGGGTTC
TACCGTGACAGGGGCGTCAACATCCCAACAAGTCATGACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95794gene:BL95794Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95794_evm0-E1BL95794_evm0-E1-1564476830-325173Branchiostoma lanceolatumexon
BL95794_evm0-E2BL95794_evm0-E2-1564476830-325171Branchiostoma lanceolatumexon
BL95794_evm0-E3BL95794_evm0-E3-1564476830-325169Branchiostoma lanceolatumexon
BL95794_evm0-E4BL95794_evm0-E4-1564476830-325167Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95794_evm0transcript:BL95794_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000123genomeSc0000123:44207..45439 -
Properties
Property NameValue
Transcript idBL95794_evm0
Biotypeprotein_coding