|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95876_evm1 >transcript:BL95876_evm1-protein ID=transcript:BL95876_evm1-protein|Name=transcript:BL95876_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=542bp
MSYLKSCCDEPLLEVTLGQLLDDTAARWPEKEAYVFRKQGVRMTFPKLKE
EAERLAAGLMSIGVGRGDVVAWVVSTRPEWIALCFAVSKIGAIAMPLSPE
YFLWSNDKEITEQALEKVKLKVLVMENQSASEHFEGTIPFLHKMFPETRS
SKTRNLTIEKVPSLSSIVLIGDRTDTNVFYNLEDIADTVGEDTTRIQHAQ
RQTDSHDTVFLTFTSGSTGVPKCVEHSSYTLINNSGLHAKTIGMTNKNMV
LHSIDLTEFPWAFLFAFTEGCTLVFPSDTPPTASEILSALLEERCEASSF
MYVKTLHDLVHDPEVKAFDLTFLEQVTVGGNVVSKRLQQDAAAVFPNADI
LTLYGTTETLHLATTLGDMTDEQRQSTVGHLLPHLEMKLVDRHGQIVPLQ
HEGEVWVRGYSVFKCYRGDEEKTAEVKTTDGWLKTGDIGILDENGLLKIV
GRTKDVILKNAEQIYPAMVERVLQTHPKILDVKVVGVPDPANVEEICACI
ILKNGHTLQSHEMREYSEANGVNTAMLRIDKPTRRFKYACGV Run BLAST on NCBI mRNA from alignment at Sc0000191:237615..243735+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95876_evm1 ID=transcript:BL95876_evm1|Name=transcript:BL95876_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=6121bp|location=Sequence derived from alignment at Sc0000191:237615..243735+ (Branchiostoma lanceolatum)
ATGAGTTACCTGAAATCCTGCTGTGATGAGCCCCTTCTGGAAGTGACACT
GGGGCAGCTGCTGGACGACACTGCGGCAAGATGGCCCGAGAAGGAGGCTT
ACGTCTTCAGGAAGCAAGGCGTGAGGATGACGTTTCCTAAACTTAAAGAA
GAGGTAGGAAAAGTGGCTTCGCTTACTTTGAAATCATGCCATCTTCTTTA
AGATCTTCATGTCATTTCCATAGCTCTGATAAAGTTTGTACCTACTTTAC
TTTACATCATCATTAGTGTTGTAAGGGATTGCGTTCGTCATTTTGGATGG
TGACATAAAGACGGTGGCCCGTGTTGGGATAAGCCTCAAGCGTCAAACCT
CTGCAGGTAAAAAAGCAACAACACACTTATCGAGAAGAGTAGGGGCGACC
CGGTGTGCTTGGCCAAGAACGCGAGCCGTAACGAAGCCGAATTGCACTAC
CACTAGCACCTCAATTGAGGATGACTGCTTTACCTTTAACTTTACCGACA
TTCCTCCTATACAGGCAGAAAGACTTGCTGCTGGACTCATGTCTATCGGA
GTGGGCCGTGGTGACGTGGTTGCCTGGGTCGTCAGTACCAGGCCGGAGTG
GATCGCTCTGTGCTTTGCCGTATCAAAGATAGGCGCCATTGCTGTAAGTC
TCTTTTATCAGACTGTCAAATGTTTGCCAATGACACTGAATATTAGAAAA
GCAGAAATGTCGCCTAAGCTAAAAAAATTCACGTTTGAATGGTTCGTTCA
ACTATTCAATAATGCACTTATTTCAGAATGTCAATGATACTAACCACTGT
AGCCGGTGCTTAGGTCCCAATTGCGCCGGTGCCCGTCGGGGGTGTAGTCG
CGGCCGGGCCCCGAGGCCACAAGTTTGTACGGGTAGACTGCCGGGTACCG
GGGGTACCTCCACGTGTTCGCACGATTAGCTCACGGCGTTTATTTATCAC
AGGGTCCCGCGTTGATTCTAAATCCAAGTTAAACTGATTCTGGGCCCCGG
TCGGGGCCCAAAATAGCCCGACAGCCACAGGGTGTCCCTACGGGGTAATA
TAATGGTCACTCCCGAAAGTGCCCAAAACAGCCGGGCGCTCGGGGCGCCG
TTTGCCTAAGCATGAGCGAGGGGGACATTGTTGGGATCTGACCACTCTTC
TCTGTTCGTACATGTACTGTATGTGTGTAGATGCCGCTCAGCCCCGAGTA
CTTTTTGTGGTCTAATGACAAGGAAATCACAGAACAAGCGTTAGAAAAGG
TAACCAGACTTTCTATATTTTGTCCTATTTATGCGGTTATTCAAGACAAT
AAAAGTAGGCATCGTTTATTTTCAGTGCTTGTGCCAAAACCTTAAAAAAG
AAGATGATTTTGTCCAAAATGCCTACTGAGCAGATGAATGAGAACTTAAT
AACTAATTGTCATGTAATTATAATACCGTATTATTCACTTGTTGAACAAT
ACATTATTCAGTAGTCTCAAGTCATTAATAGCAGACGTTTAACTTAGTTT
TATTATCCATCTCAAACTCAGGTCAAATTGAAAGTTCTTGTGATGGAAAA
TCAATCGGCCTCTGAACACTTTGAGGGGACAATACCATTCCTTCATAAGA
TGTTTCCGGAAACAAGGTCATCCAAGACAAGGAACCTTACCATTGAAAAG
TACGTATTGTTTCACCAACGAAAATATAAATGGTGTGGCATGGCCGCTGT
CTTTTTTAACGCGTATTGTTTGTTGAGTTTGATAAGGGTGTTGCAGAAAG
ACCAAACAAACATTTAGTTTGTTTGGTCTTTCTGACTATCCTGAGGAAAA
TACATTGTTACTTGCTAAAGTTATTTCAATATTTTGCATATCGTTCTATC
AGGGTGCCAAGCCTTTCATCTATTGTCCTCATTGGCGACAGGACAGACAC
GTAAGTATGATATTGATGACTGAATTTTGAATTTTTTGATGTGCAAATGA
ATTCAGGGTTGTTGATTCATCTTTAAAAACTTTATGCATGAAACGAACTT
ATATGAAATATATCTAATTTCAATAGTATTCATAACATCTATGTACAAAT
GATTTCATTCAATATACTGTGCACGGCTTTGGCAATCACATGATCTCTAT
AATGAATTTCGGCTTACGTTTTTTGTGGTACCTTTGCCCAAAGTTCTTTA
TCATTTTCAGAAACGTATTTTACAACCTGGAAGACATAGCAGACACCGTA
GGTGAGGACACAACGCGCATACAACACGCCCAGCGTCAGACTGATAGTCA
CGATACGGTTTTCCTGACTTTCACTTCAGTAAGTCTACGTCTATTCACTG
TTCCCTTATGTCTCTGTAAACGAGAATGCAGCTAAAACGGGGAAATCCTT
GAATACTAAAACATGTTGTGCAAAATTTGTAGGGAAATTAAAAATCCATT
CAATTTTATCAACTTAATTCCAGACAGGAAGACGCAATAATAAGCCAGTG
AATTCGTAAAAAGTATAACATATTCATACTCAGGAGTATGTATAACAATG
CCTTCAAGCAGTTATTTGAAACAGTACTAAACCATGATGGTATCTATCTA
CATCACACAGGGAAGTACTGGAGTTCCCAAGTGTGTTGAACATAGCAGCT
ACACACTCATTAACAACAGTGGTCTTCATGCCAAGACTATTGGGATGACC
AACAAGGTAACGGTAGACCTTTGTGTAGTTTTCACCATTGTCAATTCAAC
TCAAGATCCTAAGAATTAGGGTTAAATTGCCTTTTCAAACCCCAGGGTTA
CATAAGTCAATTAGCTCCGGTCGTTTTATTACAGGAACTAATTATGTGTG
TCGGGGGGAGGGGAGTTCATTACCCCAAGTGCCTGAAAGTTCGACGCGTA
GACCTCCTTTCCTGCTGAGGGTATGATTTTTTTACTATGTTATAGCGATG
TGGATAACATGTGTTATCGATAACACGTACCATTTCTAACACTCTACAGA
ACATGGTGCTGCACTCCATAGATCTGACTGAGTTCCCGTGGGCCTTCCTG
TTTGCCTTCACCGAGGGATGCACTCTTGTGTTCCCTAGCGACACCCCACC
CACGGCGTCTGAAATTTTGTCTGCTCTGTTGGAAGAAAGGTGATTATCAT
CTTGTCAACATGCCATAACATAAAATCGAACAAAAGTCAAGAGAAGCAAA
CAAATAAAAAACAAACAAACAAACAAACAAACTGGCAGGTGTGGGCTATA
GAATATCATTTTGTATATACGAGTAATGAAACATTTCTATTTTGCTCTCA
TGTCCGGGGCAGGCCACAAGCTTAAGGTGAAAGATAGGATGACTTAAACG
ACGTTCCAGTTGTCTATCACACTGAACAACGCGTGTTATATCTAGAAACT
GATCTCTGTGACAATTTCCAGGTGCGAAGCCAGCTCCTTTATGTACGTGA
AGACGCTGCATGACTTGGTTCATGATCCAGAGGTGAAGGCATTTGACTTG
ACATTCCTGGAACAAGGTACATCAAAACACCTTTTGTAATCTGTACAATC
TAAATCATCTTGCTCTCTTTCACAATCGAAAAACTGTTTTCTCCTTCAAT
TTTGTCTTCAGTACCAAAACCATTTTTTTCAAATTGGAAGTAGACATTTA
TAAAAAAAATCAAACAGTTTCGTGCTGCTAGAACGACTGCTAATACATAC
AATTCTCTTAGACCTAGTGGCAAATCCTCGAGGCAGAAATGAAATATTTT
TTCACAGAATGGGACACGCCGAATTGTATATTACATCCATCACTATGTTA
AGCATGCCAATGATGAACATGGAATAGAAAATATTAAGTAAACGTTTCAA
TCTTCCAGTCACAGTTGGTGGAAATGTTGTGTCCAAACGCCTTCAACAGG
ATGCTGCTGCAGTCTTCCCCAATGCGGACATACTGGTGAGTACACTCAAC
TGACAACGGTAAATGGCAAATATAACATATACTTACATAATTCCACCGGG
GTACATAATTCCGTTGCCCTGAAAAGATACGTCCAAACAGATCTCCAACC
AAATGGCCCCTAGTATAATGCACTCCTACATGTACATAAAAATTATGCAT
ACTAGGGGTAGCCTGACTAAATAGCGCTCCTAGCGGCTGGCCCGACGGAT
ACTGCCGGGTCATTAACCCCCGCCAGCGAGATCTTGGGTAAACACAGGCT
AATATCAGGGGGTGCTGCACTAGAGATCCCTCAAACCCACTGTTTTTTAA
AGTGGAGGATTTATGTAACCCGGTGGATAAATGTTAATGTGGGTTATATG
TTTAAAGAGTTTTTAAAGTTTGTCAGCGGCAATGACTGATGAAGCACACA
TGCCAATGTCGACTTATGTCCAGTTCTAACCTTTTGGACTTTCTCTTCCC
AAGACTCTCTACGGCACGACTGAAACCTTACACTTGGCAACGACACTAGG
CGACATGACGGACGAACAGCGGCAATCTACGGTAGGTCATCTACTGCCAC
ACTTAGAGATGAAACTCGTGGACAGACACGGTCAGATCGTCCCCTTACAA
CACGAGGGGGAAGTCTGGGTTCGAGGTTACTCTGTGTTCAAGTGTTACCG
AGGAGATGAAGAGAAAACTGCAGAGGTCAAGACGACAGACGGGTGGTTAA
AAACTGGGTAAGTCATGTCTATCGGTTAAATGTGCCACCTGTGTGAATAA
ATGAACTGTATTGCCCTATTCAAGAAAGCTATCTAAGCTTAACAACAAAC
TGGAAAGTACATCATGTGGTGTCATGCTCCGCGACCTAGAGATCATGATG
TTGGGTACAGTAAACATATTGTATGCTATTTCTGTACACAATGTACCAAT
AAGTCTTTTTACCAGTCCTCTGGTCCTTCTCAGGCTATACGAATATGATG
TTAGCTACTTAAGATTTGAATGGATTAGCATGGATCTTACGTAAAACGTG
TAGGATGAATGTTAACAATATCAAGAGTCATAAAATGTGATCTGCTTTTT
CCCATGTTTTTTTTAACTTGCAGTGACATCGGAATCCTTGATGAAAATGG
TTTGCTTAAGATTGTGGGAAGGACAAAAGTAAGCGGAAATCTACTACCAA
ATTTAATGCTGTATTCGTATTCTAATAAATATTTTGACGACCTCCATACA
TATGGTATTGGGGCTGTATTTCCCCTGTTTTGGTACCTGCTGTTTTTACC
TATGATATATATCATGGTTACGCAATTTCTGATTTTAGGACGTGATCTTA
AAGAACGCAGAACAAATTTATCCTGCCATGGTGGAGCGAGTACTGCAGAC
TCATCCCAAAATATTGGATGTTAAGGTTGAAAATCATGTTGATATTTCTG
CTCCTTTTTTTTTACCCTTTCCTCAAAAACACATACACTGCAGCTTAAAA
CTACAAATGCAATCAATCGCAGAAGTAAATATCAATTTAAAACTTCAAAT
AACAAAATAATCACTTTTAAAGTTATCACTGTGTCTTTTCTGCATTTTAT
TGTTTTGTATGTAAATATTGTGTAATAACTGTGAAGAATACTGTGTGTTT
TTTTCCTGTTTTACTAGGTTGTTGGTGTACCAGACCCCGCCAACGTGGAA
GAGATCTGTGCCTGTATCATGTAAATGCCTCTCAGATATACTTAGATATA
TCAAATGTACTTATTGATCTATACTACGAATTTTCAGATTTTAATGACCA
TCCTAGAAAATTCCATTCTTATAGGGTGTATTGTCAAAAAACACAAATAT
CTGTTCTAATAAGTTTTGTCCGGATCCGATTAGATACGAAGCTAATTTAT
AATTACTGCTACATCATGTATAATAGGCCTATCTAGGTGTTTAATGCGAC
ATGTCCCTCTTGCTTGTATAGATGCATGGTAGAAGTAGGAATATTGACAA
AGAGTATGATCATACTAACTTTTATTCGTTAGTAAATGCTTAAAGATTAT
GTTTCCCCGCTTTATCTAATATGCCCTTTGAGTTAGAAATCGCAACAAGA
ATGTTGAAGTTCTTGACTGAACACATTCCATTTCATGATTACAGATTGAA
GAACGGCCACACTTTACAGTCTCATGAGATGAGGGAGTACTCGGAGGCCA
ATGGGGTAAATACAGCCATGTTAAGAATAGATAAGCCCACTCGGAGATTC
AAGTACGCATGTGGAGTGTGA Coding sequence (CDS) from alignment at Sc0000191:237615..243735+ >transcript:BL95876_evm1 ID=transcript:BL95876_evm1|Name=transcript:BL95876_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=1629bp|location=Sequence derived from alignment at Sc0000191:237615..243735+ (Branchiostoma lanceolatum)
ATGAGTTACCTGAAATCCTGCTGTGATGAGCCCCTTCTGGAAGTGACACT
GGGGCAGCTGCTGGACGACACTGCGGCAAGATGGCCCGAGAAGGAGGCTT
ACGTCTTCAGGAAGCAAGGCGTGAGGATGACGTTTCCTAAACTTAAAGAA
GAGGCAGAAAGACTTGCTGCTGGACTCATGTCTATCGGAGTGGGCCGTGG
TGACGTGGTTGCCTGGGTCGTCAGTACCAGGCCGGAGTGGATCGCTCTGT
GCTTTGCCGTATCAAAGATAGGCGCCATTGCTATGCCGCTCAGCCCCGAG
TACTTTTTGTGGTCTAATGACAAGGAAATCACAGAACAAGCGTTAGAAAA
GGTCAAATTGAAAGTTCTTGTGATGGAAAATCAATCGGCCTCTGAACACT
TTGAGGGGACAATACCATTCCTTCATAAGATGTTTCCGGAAACAAGGTCA
TCCAAGACAAGGAACCTTACCATTGAAAAGGTGCCAAGCCTTTCATCTAT
TGTCCTCATTGGCGACAGGACAGACACAAACGTATTTTACAACCTGGAAG
ACATAGCAGACACCGTAGGTGAGGACACAACGCGCATACAACACGCCCAG
CGTCAGACTGATAGTCACGATACGGTTTTCCTGACTTTCACTTCAGGAAG
TACTGGAGTTCCCAAGTGTGTTGAACATAGCAGCTACACACTCATTAACA
ACAGTGGTCTTCATGCCAAGACTATTGGGATGACCAACAAGAACATGGTG
CTGCACTCCATAGATCTGACTGAGTTCCCGTGGGCCTTCCTGTTTGCCTT
CACCGAGGGATGCACTCTTGTGTTCCCTAGCGACACCCCACCCACGGCGT
CTGAAATTTTGTCTGCTCTGTTGGAAGAAAGGTGCGAAGCCAGCTCCTTT
ATGTACGTGAAGACGCTGCATGACTTGGTTCATGATCCAGAGGTGAAGGC
ATTTGACTTGACATTCCTGGAACAAGTCACAGTTGGTGGAAATGTTGTGT
CCAAACGCCTTCAACAGGATGCTGCTGCAGTCTTCCCCAATGCGGACATA
CTGACTCTCTACGGCACGACTGAAACCTTACACTTGGCAACGACACTAGG
CGACATGACGGACGAACAGCGGCAATCTACGGTAGGTCATCTACTGCCAC
ACTTAGAGATGAAACTCGTGGACAGACACGGTCAGATCGTCCCCTTACAA
CACGAGGGGGAAGTCTGGGTTCGAGGTTACTCTGTGTTCAAGTGTTACCG
AGGAGATGAAGAGAAAACTGCAGAGGTCAAGACGACAGACGGGTGGTTAA
AAACTGGTGACATCGGAATCCTTGATGAAAATGGTTTGCTTAAGATTGTG
GGAAGGACAAAAGACGTGATCTTAAAGAACGCAGAACAAATTTATCCTGC
CATGGTGGAGCGAGTACTGCAGACTCATCCCAAAATATTGGATGTTAAGG
TTGTTGGTGTACCAGACCCCGCCAACGTGGAAGAGATCTGTGCCTGTATC
ATATTGAAGAACGGCCACACTTTACAGTCTCATGAGATGAGGGAGTACTC
GGAGGCCAATGGGGTAAATACAGCCATGTTAAGAATAGATAAGCCCACTC
GGAGATTCAAGTACGCATGTGGAGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000191 | genome | Sc0000191:237615..243735 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95876_evm1 |
| Biotype | protein_coding |
|
