transcript:BL95904_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95904_evm0
Unique Nametranscript:BL95904_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95904_evm0

>transcript:BL95904_evm0-protein ID=transcript:BL95904_evm0-protein|Name=transcript:BL95904_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=321bp
MSFHLAPEHSVVCNASTEQLFTNTTVLSWTESVTVAIETLHVAMEYVRLN
NLDWETVLIYWILLPTAVLYILPWTMVGSLYVTAIIIHRYGKKHNLTDPF
AGDVWLPARRMASAFWTIQAKFWHGHEIHGLDKLPTHGPGMLVYYHGTVP
LDFYYVLAKINLVQNRPLCAVADHFMFNIPGWRFMLHTMGVTSGEHEHCV
RVLKKGNLLGLAPGGLREALFGDENYRLMWKRRMGFAAVAKEAGVPIFPM
FTQNCREAFRTPRLGKRLLEWVYEKTRMPVVGIYGGFPAKLRTYIGDPIF
DPNLSAEELAKKVSHSSPIVP
Run BLAST on NCBI

mRNA from alignment at Sc0000201:466419..470139-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95904_evm0 ID=transcript:BL95904_evm0|Name=transcript:BL95904_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=3721bp|location=Sequence derived from alignment at Sc0000201:466419..470139- (Branchiostoma lanceolatum)
ATGTCCTTTCATCTGGCTCCAGAGCACAGCGTGGTCTGTAACGCCTCCAC
AGAACAACTCTTCACAAACACCACCGTCTTATCTTGGACGGAAAGCGTCA
CCGTTGCCATAGAAACACTTCACGTTGCCATGGAGTATGTCAGGCTCAAC
AATCTGGACTGGGAAACTGTGTTGATTTACTGGATCCTCCTGCCCACGGC
CGTGCTCTACATCCTCCCCTGGACCATGGTCGGCTCGCTGTACGTCACGG
CAATAATCATCCACCGCTACGGCAAGAAGCACAACCTGACGGACCCGTTT
GCCGGGGATGTCTGGTTACCTGCACGGAGGATGGCCTCCGCCTTTTGGAC
TATCCAGGCGAAGTTTTGGCACGGTGAGCCACTTCTGTGTGTTTATATGT
TCCGCTACCATTGGCTAGATGGATGCTGTGCCGTCATAGCCTGGGTACCA
TCCTCCGTAATAACCGCTGGCTGAATCTCCGTGGTTAGCAAGCGAAAAGA
TTGAGCCCCAGGCTAGTGTCATAAAGTCCCCTTCTAATGCTTCAGTCCCA
TTTCCACTGATCCGGGGCCCGACCGGGCTGTTGGAGAAAACGAAAAATAA
GAAATGCATATCAAGAAAATACACAATATGTGGTTAGGATAATTTTTTTG
CGTTTTGTGTCTTTTGTTGTATTTTATATCATAATATTCGTTGCCACAAG
CTGCCCGGCCGGGCCCCGGATTGGAAATGGGACCAAAGCATAACTCTCTC
ATCACGTCAGCCATCCGTCGTCCCAACATTTTGTTTCTTGTCTTATCATA
AGACAAATATCTTGAACGAAGTCTTGTATTTTTCTCACTTTGCCTAAAGC
TCAATTAATGGAAAGACAATTAAAGTGACTGATGTTATCCTTGTCGCTTG
ACTCTTTCTTAACCCACAGGGCATGAGATCCATGGTTTGGACAAACTCCC
CACACACGGCCCAGGGATGCTTGTGTACTATCACGGCACTGTGCCATTAG
ACTTCTACTACGTGCTGGCAAAAATCAACCTCGTGCAGAACAGACCTCTG
TGCGCTGTGGCCGACCACTTCATGTTCAACATTCCAGGTACGTTCGTTGA
CCTTTACTTGTTTTTCAATGTGTTTTTGCTCTCGTTGTCAAACAAGTTGA
CTGATAGGCTGATATAAATCAATTGATAAGGCTCAGTAAAATCAATATTG
TGTTTTCGAGTACGGTTCTAAAATATTTACGGTCGGTAGGTAGGTAGGGA
ATAAAGAGATTGAAGTCAGATACTGTGTAACATAACATAACATAAGATAA
CATAACATAACATAACATAACATAACTGAAATGCATCAGGACACTAGTAT
TTTCACCATCATATTTTAGTCATACAGATATACTTTATACAAGCAGTTTT
CTTCCGCAACAGAAACAAAGAATGATGTCGAAAAATGATTCTACAACGTT
TTCATCACTCAGATGTTTGATAAAACATTGTATGCCCCCATGCCAGAGGT
CAGCCCAAGAAGAAAAGTGGTTGGTCGGGTAACTGGAAACACAACATTTT
TTTTACTAGGCCAAAGCTACATCTAAACTATACAAAAGTCCAGTTTCATG
TCTGCTTTTCGACATGGAAACTTCGCTAGTAATGTTAAGCCCCTATCTCA
CTGGACCCGCGGCACGTTGGCGACCTCGACGCGACCCAGCGATTTGACAA
CGCGCTCAACGAAATTTCATCGATGAAAAACACAATTTTTACGTGTTTAT
GTGTTTTGTTATATTTTCAGTCATACTTGTACGTTTTGCATTATACTCCC
ATTATAATGTCAAGGGTAACACAAATCCACTATAGGACGCATCAACGCCG
CCAACGTGCATCGGGTCCAGTGAGATTGTGGCTTTACTACCCTATGAATC
GTTGCATATATGAATGCCTCTAAGTTTTTACGCTCTCCCTTTTCAGGCTG
GAGATTCATGCTGCACACGATGGGAGTGACGTCAGGGGAACACGAACACT
GTGTCCGAGTGCTGAAGAAAGGGAACCTGCTGGGTCTGGCGCCCGGCGGC
CTGAGGGAAGCGCTCTTCGGCGACGAGAACTACAGGCTCATGTGGAAAAG
GCGAATGGGGTTCGCCGCCGTAGCGAAAGAGGCCGGGGTGGTAAGTCCTT
GTTTGATAGAATCATCCGCTTGTCTTAGTAGCTGATTGGTTTGTACTCTT
TATTCATTTCACCCCTTACCAATGAGATGATAGGTCTGTAATACTCTGTA
TACAACGTCACACATACCCTTCTACACCATCTATGTCCTTGGTGCTGATT
GGACTATCCGCCCAGTTGATATGGACTAAGGTGCTGATTGGTTCACTCAA
TCGTGTTAAAGGATATTCTATCGTGCTTTCCGGATTGACCTATCAATATC
AATCATGTTTCATATACATAGAAATACTATCAAACTTGCTTTCGCAGCTT
ATGGCTCTTCAATAAAGCAAGCCTATAGGCCAATCCATCATCGTTTTCGT
TTCTACTACTTGAACTGTGTGATCATATCTTTTGTATGGTTTGATTTATA
CGAGTTATGCAGCGCAGTATATCGTTCAAAGCTACATTCTTAACTGAAGG
ATATGTACTTTCTTTAGCTATAAACACTCTTGTTATCAATTTTCAAGTGG
ACGGACAGATATTTAATTGGGGACATATGAATAAACATATTTTCTCGTAT
TGAGATCCTATCGGTAAAGTCGACTTGAAATTGACTATGCTCTTTTGTTA
TTTTCCCATCTATATCATGAAGCCTATCTTTCCTATGTTTACGCAAAATT
GCCGGGAAGCGTTCAGAACACCGCGACTGGGAAAACGTAAGTACCATATT
CCGAAGATTGTTTACTATGCTGTGTATCATGTGAATTCTGACAAAATTTC
GTTTATCGATAATGTTTCTGTCATCTTCTTTTTCAAAGTTGATGAAGTAA
GTCTGGAAATATTTTTCTCCATTGTTTTGCACCTAGGCCTTCTGGAGTGG
GTATATGAGAAAACTAGAATGCCTGTTGTTGGCATCTATGGAGGCTTCCC
TGCCAAACTCAGGTTAGAGCAGTTGTGGTGTGTAGGGGGGGGGGGGCTAA
ACCAAGACCAGCATCATATTTCCATATTGTGGTACCATACATTTTACATG
ATATAGAAATCGGACAAGAATGTGTTTTTTCTAAAGATGTGAGGTTTTAA
AACGTGTAATACATATTGGACTGATGACGAGATATCTTGTTTCACCGTTC
CATGTTTACCCTTTGTTGGTCACACAGGACATACATAGGAGACCCTATCT
TCGATCCCAACCTCTCCGCTGAAGAGCTTGCTAAGAAGGTGAGTCATTCT
TCGTAAGCAGATTTGTCAATACTAAGGACTTCTGTACATACCTTACGACC
GATTTAAACTAAATGCACAGTCATAGACACTAGACAAGCATTTTCATAAG
TGAGCAATATATACGTTTCTCTTAATAAAGGCCTAATGAAACGTGATCTA
TTGGATAAAACACACATCAATACAGAAACTATACATATATTATAACATAT
TGGAATAGTTTTGTAGAATTTAAAGATGGCAATTCAAAAGTGCCACGATG
TTTTTGGGTACACTTTGTCTGGTACACTTTGTCTGGTACTAAATCTTCGC
CTTTTAACTAACAGGAAATAGTTGTCTGAAACACAAGATTTTTTTGTCAT
TTCAGACCCATCGTGCCCTAG

Coding sequence (CDS) from alignment at Sc0000201:466419..470139-

>transcript:BL95904_evm0 ID=transcript:BL95904_evm0|Name=transcript:BL95904_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=966bp|location=Sequence derived from alignment at Sc0000201:466419..470139- (Branchiostoma lanceolatum)
ATGTCCTTTCATCTGGCTCCAGAGCACAGCGTGGTCTGTAACGCCTCCAC
AGAACAACTCTTCACAAACACCACCGTCTTATCTTGGACGGAAAGCGTCA
CCGTTGCCATAGAAACACTTCACGTTGCCATGGAGTATGTCAGGCTCAAC
AATCTGGACTGGGAAACTGTGTTGATTTACTGGATCCTCCTGCCCACGGC
CGTGCTCTACATCCTCCCCTGGACCATGGTCGGCTCGCTGTACGTCACGG
CAATAATCATCCACCGCTACGGCAAGAAGCACAACCTGACGGACCCGTTT
GCCGGGGATGTCTGGTTACCTGCACGGAGGATGGCCTCCGCCTTTTGGAC
TATCCAGGCGAAGTTTTGGCACGGGCATGAGATCCATGGTTTGGACAAAC
TCCCCACACACGGCCCAGGGATGCTTGTGTACTATCACGGCACTGTGCCA
TTAGACTTCTACTACGTGCTGGCAAAAATCAACCTCGTGCAGAACAGACC
TCTGTGCGCTGTGGCCGACCACTTCATGTTCAACATTCCAGGCTGGAGAT
TCATGCTGCACACGATGGGAGTGACGTCAGGGGAACACGAACACTGTGTC
CGAGTGCTGAAGAAAGGGAACCTGCTGGGTCTGGCGCCCGGCGGCCTGAG
GGAAGCGCTCTTCGGCGACGAGAACTACAGGCTCATGTGGAAAAGGCGAA
TGGGGTTCGCCGCCGTAGCGAAAGAGGCCGGGGTGCCTATCTTTCCTATG
TTTACGCAAAATTGCCGGGAAGCGTTCAGAACACCGCGACTGGGAAAACG
CCTTCTGGAGTGGGTATATGAGAAAACTAGAATGCCTGTTGTTGGCATCT
ATGGAGGCTTCCCTGCCAAACTCAGGACATACATAGGAGACCCTATCTTC
GATCCCAACCTCTCCGCTGAAGAGCTTGCTAAGAAGGTGAGTCATTCTTC
ACCCATCGTGCCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95904gene:BL95904Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95904_evm0transcript:BL95904_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95904_evm0-E1BL95904_evm0-E1-1564476830-384649Branchiostoma lanceolatumexon
BL95904_evm0-E2BL95904_evm0-E2-1564476830-384647Branchiostoma lanceolatumexon
BL95904_evm0-E3BL95904_evm0-E3-1564476830-384645Branchiostoma lanceolatumexon
BL95904_evm0-E4BL95904_evm0-E4-1564476830-384643Branchiostoma lanceolatumexon
BL95904_evm0-E5BL95904_evm0-E5-1564476830-384641Branchiostoma lanceolatumexon
BL95904_evm0-E6BL95904_evm0-E6-1564476830-384639Branchiostoma lanceolatumexon
BL95904_evm0-E7BL95904_evm0-E7-1564476830-384637Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000201genomeSc0000201:466419..470139 -
Properties
Property NameValue
Transcript idBL95904_evm0
Biotypeprotein_coding