transcript:BL95984_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95984_evm1
Unique Nametranscript:BL95984_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95984_evm1

>transcript:BL95984_evm1-protein ID=transcript:BL95984_evm1-protein|Name=transcript:BL95984_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=156bp
MSRYFPTGTADEFSEHVFRTFDTNGDGVVDFREFLMAASATSKGTAEDKL
RWAFNMYDMDGDGCITRAEMVEILQKKIHPLISVHPQDDDAPDEDSAADR
QLLPTRTDGRTLQTYGRQQXKLMDANKDDEININEFIRGAQRDKDLIAML
TQNVVQ
Run BLAST on NCBI

mRNA from alignment at Sc0000262:97926..99273-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95984_evm1 ID=transcript:BL95984_evm1|Name=transcript:BL95984_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1348bp|location=Sequence derived from alignment at Sc0000262:97926..99273- (Branchiostoma lanceolatum)
ATGAGCAGGTAGATGTTACAAGAAGTCCTGTTGAAAAACAGATAGCATAA ACCCTTTCCACTTGGAAGGCCCTTCGCTGTTTTCCCCTTAGAGCCTAATT TGTTCTATACACCATACTCTTTGAAACCTCAACATCCAGTCAACTGGATT TTACCGAATCAATTTTGTATCTGGGTCGGCGACTTAATGCCAGTTGATGA GATGATGGTATGAAGGGATAATCAATACGTGTCACTAAGCTACAGGAATG TGTCGTTTTGATCGATGTTAATTTTGGCTTGCTGTTTGTGACTATGAATG TCAGATACTCCGTGTGTGGCGAACATCAATTTATCTAAATCTAATAAAGG GTGAGTTTGATTTGTCAAAACAGCTTCAACTTAACGTATATTCATAATTT TTTGCGCAAGAGAAAAATCAGCCATTTTCTATAATATGTTTTGTTTTTAG GTACTTTCCAACAGGAACGGCTGACGAGTTCTCCGAGCACGTGTTCAGGA CGTTCGACACTAACGGGGACGGCGTGGTGGACTTCCGGGAGTTCCTGATG GCCGCCAGCGCCACGTCCAAGGGCACGGCGGAGGACAAGCTGAGATGGGC CTTCAACATGTACGACATGGACGGGGACGGCTGCATCACCAGGGCAGAGA TGGTGGAGATCTTACAGGTGGGTGGGCAAGGGGGGAGGCTGGACGTGGGG TGTTACCAGGACCGACGTGGTTAAGATACTACAGGCAAGGTTCAATATGA AGCCTAAATGCAGGTGTATAACCAGGACCAACATGGTCGAGTTACCAGAG GCACTAAATGTGTGGTCAATATGAACGCTAAAGGCAGGGGATGGAGGTAC ATATCTGTATCCATATCGTTAGAAGCAAAATAGTTCTCATACTTCGGTTG GGTATCAATACCGGCACCTAACTATAAGGGGTAAATGTAAGGCTCTTATC ATAACTGCATGTTGTCTCAAAATATAGTTATGACGATAGAATTAATTGAA ATAACGGTTTGTTGTTATTGAGAACTTTATTATTGTTATTGCCAGCGACA GAGTTGGTTCGTAATGAAAACGTTGTATGTTCCATGATCTTCCATTAACC AGAAGAAAATCCATCCCCTCATATCAGTCCATCCACAAGATGATGACGCC CCAGATGAGGACAGCGCTGCTGACAGACAATTACTCCCCACAAGAACGGA CGGACGAACTCTTCAAACTTATGGACGCCAACAANTCAAACTCATGGACG CCAACAAGGACGACGAGATCAACATCAACGAGTTCATCAGGGGGGCCCAG CGGGACAAGGACCTCATCGCCATGTTAACGCAAAACGTCGTGCAGTAG

Coding sequence (CDS) from alignment at Sc0000262:97926..99273-

>transcript:BL95984_evm1 ID=transcript:BL95984_evm1|Name=transcript:BL95984_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=471bp|location=Sequence derived from alignment at Sc0000262:97926..99273- (Branchiostoma lanceolatum)
ATGAGCAGGTACTTTCCAACAGGAACGGCTGACGAGTTCTCCGAGCACGT
GTTCAGGACGTTCGACACTAACGGGGACGGCGTGGTGGACTTCCGGGAGT
TCCTGATGGCCGCCAGCGCCACGTCCAAGGGCACGGCGGAGGACAAGCTG
AGATGGGCCTTCAACATGTACGACATGGACGGGGACGGCTGCATCACCAG
GGCAGAGATGGTGGAGATCTTACAGAAGAAAATCCATCCCCTCATATCAG
TCCATCCACAAGATGATGACGCCCCAGATGAGGACAGCGCTGCTGACAGA
CAATTACTCCCCACAAGAACGGACGGACGAACTCTTCAAACTTATGGACG
CCAACAANTCAAACTCATGGACGCCAACAAGGACGACGAGATCAACATCA
ACGAGTTCATCAGGGGGGCCCAGCGGGACAAGGACCTCATCGCCATGTTA
ACGCAAAACGTCGTGCAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95984gene:BL95984Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95984_evm1-E1BL95984_evm1-E1-1564476830-413567Branchiostoma lanceolatumexon
BL95984_evm1-E2BL95984_evm1-E2-1564476830-413565Branchiostoma lanceolatumexon
BL95984_evm1-E3BL95984_evm1-E3-1564476830-413563Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95984_evm1transcript:BL95984_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000262genomeSc0000262:97926..99273 -
Properties
Property NameValue
Transcript idBL95984_evm1
Biotypeprotein_coding