transcript:BL96018_evm2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96018_evm2
Unique Nametranscript:BL96018_evm2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96018_evm2

>transcript:BL96018_evm2-protein ID=transcript:BL96018_evm2-protein|Name=transcript:BL96018_evm2|organism=Branchiostoma lanceolatum|type=polypeptide|length=457bp
MTRRSVSSKMLFNVRAALFGIVLVMLLASVGYYLSLTDRIYRIKVSKFEG
DFRTKNPVATIHRDTGEQDREVACVVEPALTNCGGTGFASVLLQTIDDLT
TCLTRGLTPTVIWMACDSCGPSGPGRNYWTWYFEAINPGIENRTETRVCM
GISREYFNLTSAYPRRSGAEGKLVDFRFADMENKISSYFQPITAEIRALV
GYVISGYIKPAPRVRKMVDTFYQSFMAERTNIGVHVRLLEEHVEEMTIME
QKTPKLQDFLRATKHIMDDIKTGKGDKEVRIFLASDRDDVIASFEEEFGK
VNVVHTTAFRGEEMDKRLEDRVWGRHLGDQVSMDILLMSKCDYLIHDESN
VASVAYYFNPNIQSFFVSGDASDHKRLNGQSRDDPVDLFRQAVAKETSIN
WDQLEKRKMISLLNASDDDKQEIVETLRCFVRNMKWSKCGREFAASKRDG
LSALLGF
Run BLAST on NCBI

mRNA from alignment at Sc0000304:263797..267569+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96018_evm2 ID=transcript:BL96018_evm2|Name=transcript:BL96018_evm2|organism=Branchiostoma lanceolatum|type=mRNA|length=3773bp|location=Sequence derived from alignment at Sc0000304:263797..267569+ (Branchiostoma lanceolatum)
TTAAACCACTGGTAGAGCAACTCCTGGTGCCCATTTCCAGCATTCCACCA
GCCCGCGTTACACGCTTTATAGTGCCATGACTCGACGCTCTGTCTCGTCA
AAAATGCTGTTCAACGTCCGTGCAGCGTTGTTTGGAATAGTACTAGTGAT
GCTTCTTGCGTCCGTTGGTTATTACCTGTCTTTGACGGATAGGATCTATA
GGATCAAAGGTAAGTTTTGCAGCATTCAAGACAGCGATGTCTCTGTGTAC
ATGTGTATAATTTTATCCCTTACTGCTTGGTCGAATGTACCTTGTCGTTA
TTATCAGGATTGGTGCATTGAGAAATGCAAGAAACCTAGATATGCTTTTA
ATAAAATAGGTTTTAATCAGACAAAAGCTAAACCTTATTGTTTAATATGG
TGGTAGTAACTTTTGGCAGTACTAAGAGTTGTGATAAGTAAACAAATGTA
TCGTCAACTTGGTTCTGCCGGTACCTATGACCACGGCACGCAAACAATGG
TGTAATGAGGCCTTTTCAAGAATGCCTTGAATACGTGGATTTGAAATATT
GGTGTTTTGAACTGGTTCATATACTGTTCAGTTCGATGAGGACAGCCAAA
AACTGAAGGTTTGTTGTGTGTGTTTCTCAGTATCCAAGTTTGAGGGCGAC
TTTAGAACAAAGAATCCAGTTGCCACTATCCACCGTGACACCGGAGAGCA
GGACAGAGAGGTTGCGTGTGTGGTCGAACCGGCGCTCACAAACTGTGGTG
GGACGGGGTTCGCCTCAGTACTCCTGCAGACCATAGATGACCTGACGACT
TGTCTGGTATGTTAGTCATTGATTTATCCATACACCAGCTGCTTATTCAT
AACAAATATTTTACAATACTTCTGTTATGATGAAGTTTGCTACTTTCGTT
CAACACAAGCGAACGTAGCTCACCTCGAATTTTCAGTCGCTCTTACGTCG
AGACCTTCTTCATGAATGATGTTGATTCAATACTTCAACCCTCAACCATA
CCACATTAAAATTAAGATTGCGAGGTATACTAGTATATATATGATTACTA
GTACCCTCGACTCCCAATATCATTTGCGGAAAATTCGCGTTTCAGTTTAA
CATGCTATACTAATATGACGAGTAACTGTATCATATGCTGACGGTAAGAA
AACTAAGCTAAAAGCATCATCACTTATAGCGATAGTCTGTTCCTTTATAC
AGACGCGAGGCTTGACACCTACTGTCATCTGGATGGCATGTGACTCGTGT
GGGCCGTCTGGACCCGGGAGAAACTACTGGACCTGGTACTTTGAAGGTAT
ATTGTCAATCAATACGTATGATACCTATGGTTATTAGCATGAACGTTCAT
CTGTGGTGGTAAATGATGTTATGAAAGCTGATATTATGAAAACTTTAACA
TGACCAACACTGGGAGAAATTGGAATTTTCGGTATGGACCATTCTACTGC
TACATGCAGCAGTACAAAGGTCCTTTCCGTAAACAAGGTGTTAGTCAAAA
CTTTCTCCTAGTGTTGGTCATGTACTACTTGAAGTTTAGTCTTCTTTCAT
CATCATATAATTATATATTCACCCGACTGGCTTGTGATCTCTTAAATGGC
ACGTCTCTAAATTTTCCTATAGTATTTCTCGTATTTTTTTTGGGTATTTT
TACCTATAAATGTGTATAATTTAGATATAACTGTGGAGGAATTTACGATT
GAAAATTTATCATTTACTGTATTATTTTTTCACTCAGCTTTTTTTTTTAT
TTCCAATACAGCGATCAACCCGGGTATTGAAAACCGAACAGAGACGCGGG
TCTGCATGGGGATCTCCAGGGAATATTTCAACTTGACTTCGGTAGGACAC
TTTCTATTTCTAACTTTCTCTTTACCAACTTACTCTCCTCAAATAAAATA
AAAAAATGAATCCTCCATATCATAGATACTAAAGAAAGATTCACGGTTGA
AGCCGAAAGGAGTCGGGCTGAATCAACCATAGCGACACAATGTAAGACAG
GCTACATTTTCGCAGCGGGATGAATTCGCAGTGAGAGCTCGAGGACATAA
AAACCATAAATATGAAACCAGTGCGGATATTTCATAACTTACGGTAAGCT
ACTGCTTCATGTATGTCTCACGTCATCATGTCATATTCTTCAGGCTTATC
CGAGGAGATCAGGAGCGGAGGGGAAACTTGTGGATTTCCGGTTTGCCGAC
ATGGAAAACAAGATATCATCATACTTCCAACCAATCACAGCAGAGATTCG
CGCTCTCGTCGGCTACGTCATTTCCGGTTACATCAAACCCGCTCCCCGTG
TTCGAAAGATGGTGGATACATTCTACCAGTCTTTCATGGCGGAACGGACC
AATATAGGTACCTTTTTTGTAAATTTCTTGTGTTTATCTAATCTCCATTA
ACATTAATCCGCCGGATTACATAAATCTGCCACTTGAAAAACAGTGGGTT
TGAGATATCATAGTGCAGCACCCCCCAGGTATGGACAGGTTTAAACTGGG
GGACGTTGGGTTGGAGATCTGTTTGGACGTATATCTTTTTAGGGTGGCGG
AATTATGTACCATGGTGGAATTATGGTAGTACATGTACATGTAGATTACT
TCTTTAATCTTTCTCATACCAAAAATACTCAAATAACTTTCAGATATAAA
AAAAAAAACTTAAACATGAGTAAGGTTCATATGTAAAGTTAGTTATTTTG
TTGATTTCTTATGACAGACCGTAATATAATTGTCAGACGTAGTAATCTGG
ATATATTGAAAAGGGAATATAAGTTCATATGTCCATCAATTTCAGGTGTC
CATGTCAGACTGTTAGAAGAGCACGTTGAAGAGATGACCATCATGGAACA
AAAAACGCCGAAGCTACAAGATTTCCTTCGAGCGACAAAGCACATTATGG
ACGACATCAAGACTGGAAAAGGGGACAAGGAAGTCAGGATCTTCCTTGCG
TCCGATCGTGATGACGTCATTGCGTCGTTTGAAGAAGAGTTTGGGAAGGT
CAATGTTGTACACACCACCGCTTTTCGGGGGGAAGAGATGGATAAAAGGC
TAGAGGACAGAGTTTGGGGGCGTCATTTAGGTGACCAAGTATCTATGGAC
ATCTTACTGATGTCTAAATGTGACTATCTTATCCATGATGAGTCCAATGT
AGCATCTGTGGCCTATTATTTCAACCCAAACATACAAAGTTTCTTTGTCA
GTGGGGATGCTTCAGATCACAAGCGGCTTAACGGACAATCACGTGACGAC
CCCGTGGACCTATTCCGCCAGGCCGTTGCCAAGGAGACCAGCATCAACTG
GGACCAATTGGAGAAGCGGAAAATGATTAGTTTACTGAATGCGTCAGACG
ATGATAAACAAGAAATTGTGGAGACACTGAGATGTTTCGTCAGAAACATG
AAATGGAGCAAATGTGGTAGAGAGTTTGCAGCGTCCAAGAGAGATGGCCT
TAGCGCATTGTTGGGTTTTTAAAGTCTAGATTTGGTGCAGTATCATTATT
TGCCATAGTCATAGCCCACTACAGTGGTGGAAGTACCCCATATATTCTAA
CTAAACTGTATTGTATCACCTGATTGTATCATGCTTGTATGTTGTATTAT
CATTTGTCATTGAATATGCGCAAATAAGAATAGATGCTCATATAGCACGT
GAACTGATTTTTAATCAATTCTATTCTTTCTAAAGAGAAAATATGTTTTC
CCGCAACAGTTGTCGACTGTCGTATTCAATCATTTTTCAACTCTAAATCA
AGGCGAAATGAGTGGCATACAGG

Coding sequence (CDS) from alignment at Sc0000304:263797..267569+

>transcript:BL96018_evm2 ID=transcript:BL96018_evm2|Name=transcript:BL96018_evm2|organism=Branchiostoma lanceolatum|type=CDS|length=1374bp|location=Sequence derived from alignment at Sc0000304:263797..267569+ (Branchiostoma lanceolatum)
ATGACTCGACGCTCTGTCTCGTCAAAAATGCTGTTCAACGTCCGTGCAGC
GTTGTTTGGAATAGTACTAGTGATGCTTCTTGCGTCCGTTGGTTATTACC
TGTCTTTGACGGATAGGATCTATAGGATCAAAGTATCCAAGTTTGAGGGC
GACTTTAGAACAAAGAATCCAGTTGCCACTATCCACCGTGACACCGGAGA
GCAGGACAGAGAGGTTGCGTGTGTGGTCGAACCGGCGCTCACAAACTGTG
GTGGGACGGGGTTCGCCTCAGTACTCCTGCAGACCATAGATGACCTGACG
ACTTGTCTGACGCGAGGCTTGACACCTACTGTCATCTGGATGGCATGTGA
CTCGTGTGGGCCGTCTGGACCCGGGAGAAACTACTGGACCTGGTACTTTG
AAGCGATCAACCCGGGTATTGAAAACCGAACAGAGACGCGGGTCTGCATG
GGGATCTCCAGGGAATATTTCAACTTGACTTCGGCTTATCCGAGGAGATC
AGGAGCGGAGGGGAAACTTGTGGATTTCCGGTTTGCCGACATGGAAAACA
AGATATCATCATACTTCCAACCAATCACAGCAGAGATTCGCGCTCTCGTC
GGCTACGTCATTTCCGGTTACATCAAACCCGCTCCCCGTGTTCGAAAGAT
GGTGGATACATTCTACCAGTCTTTCATGGCGGAACGGACCAATATAGGTG
TCCATGTCAGACTGTTAGAAGAGCACGTTGAAGAGATGACCATCATGGAA
CAAAAAACGCCGAAGCTACAAGATTTCCTTCGAGCGACAAAGCACATTAT
GGACGACATCAAGACTGGAAAAGGGGACAAGGAAGTCAGGATCTTCCTTG
CGTCCGATCGTGATGACGTCATTGCGTCGTTTGAAGAAGAGTTTGGGAAG
GTCAATGTTGTACACACCACCGCTTTTCGGGGGGAAGAGATGGATAAAAG
GCTAGAGGACAGAGTTTGGGGGCGTCATTTAGGTGACCAAGTATCTATGG
ACATCTTACTGATGTCTAAATGTGACTATCTTATCCATGATGAGTCCAAT
GTAGCATCTGTGGCCTATTATTTCAACCCAAACATACAAAGTTTCTTTGT
CAGTGGGGATGCTTCAGATCACAAGCGGCTTAACGGACAATCACGTGACG
ACCCCGTGGACCTATTCCGCCAGGCCGTTGCCAAGGAGACCAGCATCAAC
TGGGACCAATTGGAGAAGCGGAAAATGATTAGTTTACTGAATGCGTCAGA
CGATGATAAACAAGAAATTGTGGAGACACTGAGATGTTTCGTCAGAAACA
TGAAATGGAGCAAATGTGGTAGAGAGTTTGCAGCGTCCAAGAGAGATGGC
CTTAGCGCATTGTTGGGTTTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96018gene:BL96018Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96018_evm2transcript:BL96018_evm2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96018_evm2-E1BL96018_evm2-E1-1564476830-430610Branchiostoma lanceolatumexon
BL96018_evm2-E2BL96018_evm2-E2-1564476830-430612Branchiostoma lanceolatumexon
BL96018_evm2-E3BL96018_evm2-E3-1564476830-430614Branchiostoma lanceolatumexon
BL96018_evm2-E4BL96018_evm2-E4-1564476830-430616Branchiostoma lanceolatumexon
BL96018_evm2-E5BL96018_evm2-E5-1564476830-430618Branchiostoma lanceolatumexon
BL96018_evm2-E6BL96018_evm2-E6-1564476830-430621Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000304genomeSc0000304:263797..267569 +
Properties
Property NameValue
Transcript idBL96018_evm2
Biotypeprotein_coding