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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96044_evm1 >transcript:BL96044_evm1-protein ID=transcript:BL96044_evm1-protein|Name=transcript:BL96044_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=393bp
MAEQREVWDVIVVGAGVMGSSTAFHLAQGGGKTLLLEQFFLPHTRGSSCG
QTRIVRKSYIAEHAHYADMVTASIRIWEQVEKELGTTLMVPISRLLWARS
ENPKIHAIADTLDGVGARNSRLQGRDLRRRFPMLRFPPGYVGVLEEDAAV
IKADTAVRCLQELFVKRGGRIKDGERILKIVPGQTITVTTATMTYRTRKL
VLTCGAWAPGILRDLGLNLPLKPLRINVCYFKEKRSTSAHSLASNFPVIK
DEDDDVYGIPSLEYPNMVKICRHVNWKTGYSANPEQRDVDIREHLEEDVR
YLGNLVRRHLPGLEDKPAVVETCMYTNTPDAEFILDRHPQFHNIIIGTGF
SGHGFKLGAAVGRLLSELATDRRPFLNMEPYRIARFTSPKAAL Run BLAST on NCBI mRNA from alignment at Sc0000338:245523..250409+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96044_evm1 ID=transcript:BL96044_evm1|Name=transcript:BL96044_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=4887bp|location=Sequence derived from alignment at Sc0000338:245523..250409+ (Branchiostoma lanceolatum)
ATGGCAGAACAACGTGAGGTTTGGGACGTTATCGTGGTGGGGGCTGGGGT
GATGGGGTCTTCCACGGCGTTTCACCTGGCGCAGGGCGGCGGCAAGACGC
TTCTTCTGGAACAGGTGAGAACAAAGAAAAAACAGGAAGACGGGCACACA
TTCGTACGTTCTCTGTGGCACAACTACTTATATGTGTATTTGATAACTCA
ATGTTTGACGATTCTGAGTCAGCTGAAGTCTGCCAAAGATTATGTTCAAA
ATCCAACTTCACGCCGTTGTATTGTGGNTGTTCAAAATCCAAACACCGCT
ACATTGTGGTGCTCTCTTTGACCCTCTGTCGGGTGATGCAACACCGGTGC
ATCTGGTTCAGTGATCGTGATAGATCAAGGCCATGAGTATTGTTACTTTA
TACGGCTGACTAGTCCAAAACGCCCGCAGGCGTTGTTTTTGTCGCATGCT
GTAAGCCGGGGTACTAACATAAACATAGTGCTTAAACATATTTAAACAGA
GGTACAAAGGGCAAAATCCAAACGTCATTCTGCGTTTATATAGTCGCGAT
CTGGCGAGCTTCTATTTTGTTTCGATTGTTTGGAAGACTCCATTAGTGAG
AGTACATACATACGTTGATGAAGGTCGTTGATAAAGGTTACGTTGAGAAC
ATACATAGATAATAAAAACCAGCGCAGGGGCGCATCCGGGGGAGTCATCA
TCTAAAATTTCAAACAATTAACGCCAGAACACATACAAATATTTATATTT
CCCCCGTACCATTCCCCAGTGGAATGCCCTGCCTGGCGCGGTTCCTACCG
CTGAGTCTTACCGTGCCAGGCCTAAGCCTGGGACGTCCTCCCCCACCCCT
ACTTTGCCCCTCGCGGGGTCATCTGGGGGTATTTGAAGTTGAAGTTCAAG
ATATTATACTTCGCTACTCTTCCTGGAATCCTAAATTATACATACACATG
GCATACAAATTACATTAGGAATTATGACATACACATTACATGGTGTATGA
CGCCGGTTTAATGGATATGGCGTCACTATCCAAAAATAAATACAACAACA
ATAAAAAAACAGATTAAAGTCGTTCACACGGCATGTATGAAGGTGACTGT
ACTAAAATCCTATACATCGAAATGAAACATAGCATGGCATGATTTATGTT
TTATATCCTGAATGGGTACAAGAAGCGAGTTGGAAGAAAGTGCAATTTTG
AAAATGTGCGTCACAGGCAGCGAGTTTGGAATATCGTCCTGCTCAGTGAC
CTACAATAGAGGTCACGCTATTTTTGATAAGTGATCAGTGGCTGTAAAAT
AATCAGAGGACCACAGGCCTGTAATTGATGGTAATTCCGATAGATGTCAC
TTATGGATTCCATCGGGGATTCTGGGTCCCAAGTCTTGTATTTGATTGGT
AGTTAACGTTCGGTAATCGTTTATTGTTCCCACGCGCAGTTTTTCCTGCC
TCACACGCGAGGGAGCTCCTGTGGTCAGACTCGCATCGTCCGAAAGTCCT
ACATCGCCGAGCATGCGCACTACGCAGACATGGTGACGGCATCCATCCGA
ATCTGGGAGCAAGTGGAGAAGGAATTGGGAACTACACTTATGGTGTAAGT
TGAAATGTCATGAGTGTATTCGTGAATTCACATCAGAACTGGATTGCGCG
TTCTTGACGATGTCGTACGGTGTACGGGCTGGGTGTTTGACCCAGTGGTC
CCGGGTTCAAATCACCTGACTATATCATGGCTTTGGTTTATACTACGTTT
ACCTTATCTACCTTACTGTTCTCTGTATGTAGCATTTAAAAAACAAGTTA
CAAGAACTTAAGTGCCGTGCCACATTGTCCTTGCAATGGTCTGTTTAAAG
ATCCAAAATGAAAAATAACAAAATGGGACAGTACGCTTTGTTCATTCTTT
GAACTCTTTCTGTTTTCAAAAGCCCCATTTCCCGTCTCCTGTGGGCCCGT
TCGGAGAACCCGAAGATCCACGCCATCGCCGACACGTTGGACGGGGTGGG
CGCCCGGAATAGTCGCCTCCAAGGCAGGGACCTGAGGCGGAGGTTCCCGA
TGCTGCGGTTCCCGCCAGGGTACGTGGGTGTGCTGGAGGAAGACGCTGCT
GTCATCAAGGCTGACACCGCGGTTAGGTGTTTGCAGGTTTGCGCAACCTG
ATTTTCTTTCAGAGGTCCTTTATGCATACTGTAAATGCATTTAAGTTTGC
GTGGTTTTTATTTCGCGGTAGGGAAAAATGGAGTGTTCGTGGGGGTTAAG
TTCGCGTTTGAAACAATAGAAGGGTTTCAGTCATAGACCCCGTTCATACT
AAATCGCGCAAATAGCGAAATCGCCCTGAGTCGCATTCCTTCACACCAGG
GGTCGAACGAGCGCGAGTTGTAAAATCGCGTCCAACAGCTTGATAAACGG
CGGGCGCGTTATTCGATTGTCACCACTCTTACTGTTGTGTTCAATGACCT
TCTTGTACTTCATCTTGAGTTTTTTTACATTTAATAGTGCGGCATTACTT
CCATGTTTTCGCGTATTTGACCAACTCAGGCAGTCGCCACTTCAGCGTAC
ACGCTCTGGTTTCGGTGGGATCCCTTGAGTTTCTTCTGAATCCCCGCATC
CCCGAAGATGGCCATCAGTACTACATGCGTTTTCGTCATTCCATACGCCA
AAATCGCCGCCCGATTCTGACATATTTCCGCCGCATTCGGCGTAATATTC
CAACAAGCTAGGAGGTAGATGAACATTGTATAATGAGCGGAAAGACTGAA
TTTGCAGATGATCCCTTGACCCATGACAGGGTCAATATGCAAAGTAAAGC
GCCCAACGCGCATCAAGGCGATTTCGAGCGTTCATACTAAGTCGGAATGC
AGGCAAATCGCGAGCAAACCACCTCCGGAGGTGGTTTCGCGGAAAGCGAT
TTCGGGCGATTTCAAATGCGATTTGGAGCGTTCATACTAAGCCACATTAT
CGCGATTTCGGCGATTTCGCGATTTACGCGATTTAGTATGAACGGGGTCT
AGGTGGACAAAAAGTTTCGCGGTGGTTTTAAGTTCGCGCTGAAAGTTCAC
CGTGGAAACCACGAACATAAAACCACCGCCAACATATCTGCATTTACAAA
CTTTATGCCCTTATTTGAAAAGACCTTCCTCGTAATTCGCTGCATGATTT
GCTCAACGCTGAAATCAAATATACTCAGACGTTCACTTGAAAATGCAGGA
TATACATTCTGATTTGAAAAACAAGAACGTTTGAAGACAAAAAGCTAGAT
TTTGTTAATTCTAGAGTAACCCTGCAAAAACTCTTCGCGACTTCGGCCTC
TATAATGCAATTTATTGACGTGCATTTTGTCACACAATTGTTGCTATCTT
GTTCATTTTCTGATTCAGGAACTTTTTGTGAAGAGAGGCGGCCGCATCAA
AGACGGCGAACGGATCTTAAAGATTGTCCCCGGACAGACGATAACCGTTA
CCACGGCAACCATGACGTACAGGACCAGAAAACTGGTGCTGACGTGTGGG
GCTTGGGCTCCCGGCATCCTCCGCGACTTGGGGCTCAACCTGCCCTTAAA
AGTAAGTAGTATATTAGACACTAAATATTCTGTTCTTCAAAGCCGGTTCT
ATATTTCTTAGTCCAAAAGAAAAAGGGAAAAGGAGCGCTTCAATAAATAT
GTATATCTCTTACAAATCAGTAGGTACGGCACAAATGTCACGCAAAGAGA
AATTTAAGTAAGCCATTCTCGTCTTTCTCTATTCCCAAAGTCTTAGGGAC
CTGATTGTACAAAATACATGTAGCTGGAAAATCTTTTCTAGCCTCTCCGG
ATCAACGTGTGTTACTTCAAAGAGAAACGGTCGACCTCCGCCCACAGTTT
GGCGTCTAACTTCCCTGTGATAAAGGACGAGGATGATGACGTGTACGGCA
TACCCAGCCTGGAGTACCCAAATATGGTCAAGGTATAAAACTTACCCTTT
TACCCTCACCCATAGATTTTGATGTATTGTCTTTCGAAACTGTTATGCCG
ACGACGCATTAAGTGTAGACGACTTGTGAGCTAGTTAAGGATTGTTGGTT
GAGGAACTGCATACTTAGCTATAAATTGACGATTCATACCTTTTCTCAGA
TTTGTCGTCACGTTAACTGGAAAACAGGTTACTCAGCTAACCCCGAACAG
CGTGACGTCGACATCCGTGAACATTTGGAGGAGGACGTTCGTTACTTGGG
TAATCTCGTGAGACGCCACCTACCGGGGTTGGAGGACAAGCCAGCCGTGG
TGGAAACCTGCATGTACACCGTGAGTCAATAGAACCCTACGGCCATGACG
GCAGGGTTTGTGTAATACCATAAGTACACCATATTATTCCAACGTGTAAC
ACATTGTATCAATCTACATTATTTTGAGCAGCAGCCATTGGGTCTGCAGT
CTGCACTACATATCATTTGAGGTTAACATGAGGACATATTTCTGCTTTGT
ATCATTCAGATCTTGAGAGCACAGTGCGTTATTGAACCACAAATAAACAA
TCGTTTTGATGACTCATTTTGATTTGAATTAATATACTTTGTATTTCACA
GAACACTCCGGATGCTGAATTCATACTGGACAGGCATCCACAGTTTCACA
ACATCATCATCGGCACCGGATTTTCAGGTCTGCAATACTTCTTTTCTCTT
TCGGGGTATAGAGTGGCTGTTTTGTTGGTTATTTTCCAAAAACCCTTGTC
ACTTCTTAACTCTTCTTGTCTGCTAGATACATCTGAATACTTTTTTGTTG
CTTTTGCAGGTCATGGATTTAAGCTGGGAGCTGCAGTTGGGAGACTCCTG
AGTGAACTGGCCACGGATAGACGTCCATTCTTAAACATGGAACCCTACAG
GATAGCACGGTTCACATCTCCTAAAGCTGCACTCTAG Coding sequence (CDS) from alignment at Sc0000338:245523..250409+ >transcript:BL96044_evm1 ID=transcript:BL96044_evm1|Name=transcript:BL96044_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=1182bp|location=Sequence derived from alignment at Sc0000338:245523..250409+ (Branchiostoma lanceolatum)
ATGGCAGAACAACGTGAGGTTTGGGACGTTATCGTGGTGGGGGCTGGGGT
GATGGGGTCTTCCACGGCGTTTCACCTGGCGCAGGGCGGCGGCAAGACGC
TTCTTCTGGAACAGTTTTTCCTGCCTCACACGCGAGGGAGCTCCTGTGGT
CAGACTCGCATCGTCCGAAAGTCCTACATCGCCGAGCATGCGCACTACGC
AGACATGGTGACGGCATCCATCCGAATCTGGGAGCAAGTGGAGAAGGAAT
TGGGAACTACACTTATGGTCCCCATTTCCCGTCTCCTGTGGGCCCGTTCG
GAGAACCCGAAGATCCACGCCATCGCCGACACGTTGGACGGGGTGGGCGC
CCGGAATAGTCGCCTCCAAGGCAGGGACCTGAGGCGGAGGTTCCCGATGC
TGCGGTTCCCGCCAGGGTACGTGGGTGTGCTGGAGGAAGACGCTGCTGTC
ATCAAGGCTGACACCGCGGTTAGGTGTTTGCAGGAACTTTTTGTGAAGAG
AGGCGGCCGCATCAAAGACGGCGAACGGATCTTAAAGATTGTCCCCGGAC
AGACGATAACCGTTACCACGGCAACCATGACGTACAGGACCAGAAAACTG
GTGCTGACGTGTGGGGCTTGGGCTCCCGGCATCCTCCGCGACTTGGGGCT
CAACCTGCCCTTAAAACCTCTCCGGATCAACGTGTGTTACTTCAAAGAGA
AACGGTCGACCTCCGCCCACAGTTTGGCGTCTAACTTCCCTGTGATAAAG
GACGAGGATGATGACGTGTACGGCATACCCAGCCTGGAGTACCCAAATAT
GGTCAAGATTTGTCGTCACGTTAACTGGAAAACAGGTTACTCAGCTAACC
CCGAACAGCGTGACGTCGACATCCGTGAACATTTGGAGGAGGACGTTCGT
TACTTGGGTAATCTCGTGAGACGCCACCTACCGGGGTTGGAGGACAAGCC
AGCCGTGGTGGAAACCTGCATGTACACCAACACTCCGGATGCTGAATTCA
TACTGGACAGGCATCCACAGTTTCACAACATCATCATCGGCACCGGATTT
TCAGGTCATGGATTTAAGCTGGGAGCTGCAGTTGGGAGACTCCTGAGTGA
ACTGGCCACGGATAGACGTCCATTCTTAAACATGGAACCCTACAGGATAG
CACGGTTCACATCTCCTAAAGCTGCACTCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000338 | genome | Sc0000338:245523..250409 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96044_evm1 |
| Biotype | protein_coding |
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