transcript:BL96045_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96045_evm0
Unique Nametranscript:BL96045_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96045_evm0

>transcript:BL96045_evm0-protein ID=transcript:BL96045_evm0-protein|Name=transcript:BL96045_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=396bp
MAEQREVWDVIVVGAGVMGSSTAFHLAQGGGKTLLLEQFFLPHTRGSSCG
QTRIVRKSYIAEHAHYADMVTASIRIWEQVEKELGITLMVPISRLLWARS
ENPKIHAIADTLDGVGARNSRLQGRDLRRRFPMLRFPPGYVGVLEEDAAV
IKADTAVRCLQELFVKRGGRIKDGERILKVVPGQTITVTTATMTYRTRRL
VLTCGAWAPGILRDLGLNLPLKPLRINVCYFKEKRSTSAHSLASNFPVIK
DEDDDVYGIPSLEYPNMIKICRHVNWTTGHSANPEQRDVNIRDHLEEDVR
YLGNLVRRHLPGLEDKPAVVETCMYTNTPDAEFILDRHPQFHNIIIGTGF
SGHGFKLGAAVGRLLSELATDKRPFLNMKPYRIARFAVHIPPYATH
Run BLAST on NCBI

mRNA from alignment at Sc0000338:251668..258233+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96045_evm0 ID=transcript:BL96045_evm0|Name=transcript:BL96045_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=6566bp|location=Sequence derived from alignment at Sc0000338:251668..258233+ (Branchiostoma lanceolatum)
ATGGCAGAACAACGTGAGGTTTGGGACGTTATCGTGGTGGGGGCTGGGGT
GATGGGGTCTTCCACGGCGTTTCACCTGGCGCAGGGCGGCGGCAAGACGC
TTCTTCTGGAACAGGTGAGAACAGAAAAAGGAAGCGGGGCACAGTCTCCG
TGTCAGAGAGATTTGATAACCCATTTGACAATTGAAGTCTCCCAAATACT
ATGTAACGCTAGTTCACCATTAACTGCGATACTTTCTGGTTAGAGTCAAT
TGTCACCAATGCAACCTGGCCAATCAATAAACCATGGTTTCTTTTTGTTA
CATGTTTATATTATTGATTACCTTTGTCACTGATGCTATACATGGTACAT
TTCTTCTCTAGTCCCGCTGATGTCATGATACAAAAATATTGCAATCTTAA
AGGACCGCCCGTGGCGTTGAGACCGGCGGCATTTACCAATTTTGAGAATA
CTCCTCAATTATCTTGCCGCTAATTACCTTTATAAAGCAGTTCCTTTCTT
GGGTTGAAGAGAGTGCTTAAGATGTAAACTTGTCCAAGCAGAAACAAATC
ACCACAATACGGCCGTTAATTTCCACATGACTACGTTGCAAACAACACGC
TTTGTTCCAGCGAACCAACACCGTAGTTCATCCTCCCAATGAGCCATATA
ACCTCCTTGATCCTACCGACCTGAAGTTAGCAGCCCTTTCAGCAGCCGAT
TCCAGCAGCCGATTCAACAGCCCATTCCAGCAGCCGATTCAGCTATAGGA
AAGCTAGCAGCTGATTCGGATGCACCGATACTCACTGTATTTGCTTATTT
ATTTGATTCATCGGGTTTTTCGCCGTGAATGTGGACAAAATAGATATAAG
ATCTCTTCCGTGAAGACTCGGGTCTATACTTTGAAAGTCAGGTTAATTTA
AATGGGAAAAAACACAGAAAAACAACAACAAATAACCATAAGAGCGACAC
CTATTGGAAAATGTGTGAATTGCAGTTAAACTTAAACGCCTGGTAATTGT
GGCTACCACCTTCAAGAGAAACACAAGTGAACGTGTCAAAATTAAATCCG
GCAGGTAAAGTTTGAAACTTTAAGAAGATACACGAGATTGTTAGCTATCA
AATTATGCCTTTCAAGTTCACCTGCCTAATTTCGTTTATTAGCTAAAAGC
CATCTGTTCAGTACATTAGCGATAAAGCGGAAATCTCGAGACTGTAGTCT
TTTGTAGTCAATTAGTGTCCCTGTGGGAGGTAAATTAAATCTGGCAGGTA
CATTTTGAAACTTTTAGAAGATACACTAGATTGTTAAGTATCACATTATG
TCTTCCAAGTTCACCTGCCTAATTTAGTATTTTAGCTAAAAGCCATCTGT
TGTAGTACAGTAGCTATATAGCGGAAATCGTGAGATCGTGGTCTCTTGTA
GTCAATTATTGTCCCTGTGGGAGGTTAATTAAATCTGGCAGGTAATTTTT
GAAACTTTTAGAAGATGCACTAGATTGTTAGCTATCANAATTATTGTCCC
TGTGGGAGGTTAATTAAATCTGGCAGGTAATTTTTGGAACTTTTACAAGA
TGCACTAGATTGTTAGCTATCCCATTATGCCTTCCAATTTCACCTGCCTA
ATTTAGTTTATTACCTAAAAGCCATCTGTTTAGTAGAGTAGCTATAAAGC
GTAACTCTTGAGATCGTAGTCTCTTGCAGTCAATTAGTGTCCCTGTGGGA
GGTTAATTAAATCCGGCAGGTACATTTTGAAACTTTTAGAAGATGCACTA
GATTGTAAGATATAATAGTATGCCTTCCAAGTTCACCTGCCTAATTTCGT
TTATTGGCTAAAAGCCATCTCTTCAGTACAGTAGCTATATAACGGAAATC
TTGAGATCGTGGTCTATTGTAGTTAATTACTGTCCCTGTTGGAGGTAGAT
TAAATGTGGCAGGTTAACTTTGAAACTTTAAAAAGATGCACTAGATTATT
AGCTATCATATTATGCCTTCCAAGTTCACCTGCCTAATTTCGTTTATTAG
CTAAAAGCCATCTGTTCAGTACANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGATCCTCCCATGACG
TGGTCAGCCTGTTCCATTCTGGGGTGGAAAGTTTTTGACGTCGTCGTCCT
CGAATGCAGGGTTATTGAAGGTTTTTAGACAGTGATCTGAATACGTTAGT
CAGGTTTGCATCTCTGGCGGTATTACTGATGCTGCATCTAGCACATATCC
CTAAATACCCAGTTTTGAAAAAATCCCAGTTTTATGTATTATGGTACACT
GTGGATTTAAGTGAAGTAACGTTCGGGTGCAAAATCCAAAGCCATATCCT
GAACAGGTATAAGAAGCGAATAGGAAGAAAGTGCAACTTTTGAATGTGCG
CCACAGGCAGCGTGTTTGAAATATCGTCCTGCTCAGTGATCTACATTCTC
ACCTACATTGCAGGTCACGCCATTTTTATAGAATGGACCAGAGGCCTGTA
ATTCATAATGCCGATAAATGAGAGTTTTAAGACATTACAGTTTCCATCGG
GGATTCCAGTTCCTAAGTCGTTTATTTTCTTGGTAGTTCGGTAATCGTTC
AAGTTCCATCGGGGATTCCAGTTCCCAAGTCGTTTATATTCTTGGTAGTT
CGGTAATCGTTCATTTTTCCCACGCGCAGTTTTTCCTGCCTCACACGCGA
GGGAGCTCCTGTGGTCAGACTCGCATCGTCCGAAAGTCCTACATCGCCGA
GCATGCGCACTACGCCGATATGGTGACGGCATCCATCCGAATCTGGGAGC
AGGTGGAGAAGGAATTGGGAATTACACTTATGGTGTAAGTTGAAGTGTCT
CTATGAATGCATTCGTGAATTCATATCAGAGCGCATTTCAGTAAATTGGA
CATGTTTCGATTCCCATTGCCTGTCTGTATTTCCATCATTTTCTTTCAGC
TCCAAGTTCTTTAAATTTGTTTTCAACAGCCCCATTTCCCGTCTCCTGTG
GGCCCGTTCGGAGAACCCGAAGATCCACGCCATCGCCGACACGCTGGACG
GGGTGGGCGCCCGAAACAGTCGCCTCCAAGGCAGGGACCTGAGGCGGAGG
TTCCCGATGCTGCGGTTCCCGCCAGGGTACGTGGGTGTGCTGGAGGAAGA
CGCTGCTGTCATCAAGGCTGACACCGCGGTCAGGTGTTTGCAGGTTTGCG
CAAGTTCTGAAACCTCTTCGGCCAGAAGCGCTTCAAACGCAATTAACTGA
GGTGAATTCTGTCACAATATTGTCGTCATCTTATTGTCCAATTTCCGATC
CAGGAACTTTTTGTGAAGAGAGGCGGCCGCATCAAAGACGGCGAGCGGAT
CTTGAAGGTTGTCCCTGGACAGACGATAACCGTTACCACGGCAACCATGA
CGTACAGGACCAGGAGACTGGTGCTGACGTGTGGAGCTTGGGCTCCCGGC
ATCCTCCGCGACTTGGGGCTCAACCTGCCCTTAAAAGTAAGTAGCTTTAC
AGTAGATACCAATCAGTTATTCATAGTCAGTTCTGTTTTTTAGCCCCCCC
AAAAAAATGAAGGTGTCTGGGTTTATTTTACTTCATGTACGAAAAGTACC
AACGTAGCACTCTAAGTTCTGCCACAATATTTGTTCAAAGAAAGTTAAAA
CACGTGCTTTTAGAAAAGCTGTCATTTGGCGGGTCAGGGTCCAATAACAA
GTTGCCTGAGGCAATAGACAGGATGATCCTGTCAACAGTTGGGAAATTTG
CACTGTTGACAGGATAATTCACAGGATCATCAAGTATAGATTTGGTCTCA
TGGCCGAATTTTAAAAACATTCCATGGTGACGGGTGGTGAAGCCCTTGTT
CAAGCTGATAACTGAAGTCCAGCCTCCGTCACCGAGAGGTCAAGGGAAAC
ACTCCCCCCCCCCCAAGAATGGTGCTAAAACATTTTAAGGTTTCTTAAAA
TCCTGAGCAAGACTAGAAAGGCAACATTTTCGAGAAAATGCAGGATATTT
CCGTCTCATTGATGAAGGAAGTATGAAATACGACATTTCTGCTTTATGCA
AANTAAAGGAAGTATGAAATACATTTCTGCTTTATGCAAATTAGGTCCTC
GTTAGCATAATGCACATTCTGTTGTATTCACCGTTCCTAAAGCTACCTAC
ATCTCCTATATGACATCTGTATCGTTTACCGTAAGGAAAATATAAGTTTC
TGCATTACCAGCAAGGTTGGCAGGAGACAACCAACCAAACTGCCAATGCT
TTGGAGCTCCTCGAGTTTTGGTGTCCACAGAGCTCAAGGGTTTTTTTCTC
GGGAGGCATGATGTTCAGCACGTTCTTTTGATAACAGACCAACTGGGGTA
GAATACTAGATTGGGTGTCCCGAGAACCCCCTGACACACTCCTACCCGTA
CGAAATTGGATACCCCGTAAGTAAGTCATCTGTCTGGAGACTTGCATGCC
AAACACTGCTAACATGGTGTCTGGGCATGGGCATTTGGCCCCGGCTCCGC
GCCGGACTCTTGAACAATAGCGAGTTTTCTTCCCCGCCGAGCAGTTGCGC
CCTTCGGGCGCCCTTCGGGCGCCGTCGGTTTTCGGGGTTACTTCAGGATC
CGCCCAGCCTATCACCCGATATCCCGGTATATATTCGGTATATATATATA
GTACAAACTCTCCTTCCGAGGCCTACAGCCTATGGCCTGGGTGACATGCG
GGTGATTCTACCGCCCCGTGGCGTCCACAGAGATTGCGCGGACGAATTAC
AGAAAGTCCAGTTAATCGGACGTATCAACACACTGTTACGCTCGCTCCTG
AAGCTTCGCCAAAATCTTTTCTAGCCTCTCCGGATCAACGTGTGTTACTT
CAAAGAGAAACGGTCGACCTCCGCCCACAGTCTGGCGTCTAACTTCCCTG
TGATAAAGGACGAGGATGATGACGTGTACGGCATACCCAGTCTGGAGTAC
CCAAATATGATCAAGGTATAAAAAAAAACATTTTACCCTCACCTATAGAT
TTTGATGTCTTTCGGAACTGTTATGCCGACGACGCAATAAGTGTAGACGA
CTTGTGGTCCAGTTTAGCGATTGTTGGTTGAGGAACTGCATACTTAGCTA
TAAATTGACGATTCATACCTTTTCTCAGATTTGTCGTCACGTTAACTGGA
CAACTGGTCACTCGGCCAACCCCGAGCAACGTGACGTCAACATCCGGGAC
CATTTGGAGGAGGACGTTCGTTACTTGGGTAATCTCGTGAGACGCCACCT
ACCGGGGTTGGAGGACAAGCCAGCCGTGGTGGAAACCTGCATGTACACCG
TGAGTCAATAGAACTTTACGGCAGGGTTTGTGCAAGGAGCATAAGAACAC
CACATTACATTGCTCCAATATGTAATAGATTGTATCAGTCTACGTTATTT
TGAGCAGCAGTCATTGGGTCTGCATTTCATGTAATCTGATGTTATAATAT
GAAGACAAATTTCTGCATTCAGATCTTACATACATATCATACATGTACAG
TACATTGGTGAACCACAAATAAATATGATAGCCCTCGTTTTGATGACTCA
TTTTGATGTAATCAGAACATACATTGCATTTCACAGAACACTCCTGATGC
TGAATTCATACTGGACAGGCATCCGCAGTTTCACAACATCATCATCGGCA
CCGGATTTTCAGGTCTGCAATACTTCTTTGTCCTCTTTGGGGGTAGAGTG
GCTGTTTCTAAAACCTTGTCACTTATTCATTCTTTTTGTAATACTAAATA
AATGGTGAAAACTTTTATTGTTTTTGCAGGACATGGATTCAAACTGGGAG
CTGCAGTTGGGAGACTCCTGAGTGAACTCGCCACGGATAAACGTCCTTTC
CTAAACATGAAACCCTACAGGATAGCACGGTTCGCGGTTCACATCCCTCC
TTACGCTACACACTGA

Coding sequence (CDS) from alignment at Sc0000338:251668..258233+

>transcript:BL96045_evm0 ID=transcript:BL96045_evm0|Name=transcript:BL96045_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=1191bp|location=Sequence derived from alignment at Sc0000338:251668..258233+ (Branchiostoma lanceolatum)
ATGGCAGAACAACGTGAGGTTTGGGACGTTATCGTGGTGGGGGCTGGGGT
GATGGGGTCTTCCACGGCGTTTCACCTGGCGCAGGGCGGCGGCAAGACGC
TTCTTCTGGAACAGTTTTTCCTGCCTCACACGCGAGGGAGCTCCTGTGGT
CAGACTCGCATCGTCCGAAAGTCCTACATCGCCGAGCATGCGCACTACGC
CGATATGGTGACGGCATCCATCCGAATCTGGGAGCAGGTGGAGAAGGAAT
TGGGAATTACACTTATGGTCCCCATTTCCCGTCTCCTGTGGGCCCGTTCG
GAGAACCCGAAGATCCACGCCATCGCCGACACGCTGGACGGGGTGGGCGC
CCGAAACAGTCGCCTCCAAGGCAGGGACCTGAGGCGGAGGTTCCCGATGC
TGCGGTTCCCGCCAGGGTACGTGGGTGTGCTGGAGGAAGACGCTGCTGTC
ATCAAGGCTGACACCGCGGTCAGGTGTTTGCAGGAACTTTTTGTGAAGAG
AGGCGGCCGCATCAAAGACGGCGAGCGGATCTTGAAGGTTGTCCCTGGAC
AGACGATAACCGTTACCACGGCAACCATGACGTACAGGACCAGGAGACTG
GTGCTGACGTGTGGAGCTTGGGCTCCCGGCATCCTCCGCGACTTGGGGCT
CAACCTGCCCTTAAAACCTCTCCGGATCAACGTGTGTTACTTCAAAGAGA
AACGGTCGACCTCCGCCCACAGTCTGGCGTCTAACTTCCCTGTGATAAAG
GACGAGGATGATGACGTGTACGGCATACCCAGTCTGGAGTACCCAAATAT
GATCAAGATTTGTCGTCACGTTAACTGGACAACTGGTCACTCGGCCAACC
CCGAGCAACGTGACGTCAACATCCGGGACCATTTGGAGGAGGACGTTCGT
TACTTGGGTAATCTCGTGAGACGCCACCTACCGGGGTTGGAGGACAAGCC
AGCCGTGGTGGAAACCTGCATGTACACCAACACTCCTGATGCTGAATTCA
TACTGGACAGGCATCCGCAGTTTCACAACATCATCATCGGCACCGGATTT
TCAGGACATGGATTCAAACTGGGAGCTGCAGTTGGGAGACTCCTGAGTGA
ACTCGCCACGGATAAACGTCCTTTCCTAAACATGAAACCCTACAGGATAG
CACGGTTCGCGGTTCACATCCCTCCTTACGCTACACACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96045gene:BL96045Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96045_evm0transcript:BL96045_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96045_evm0-E1BL96045_evm0-E1-1564476830-441914Branchiostoma lanceolatumexon
BL96045_evm0-E2BL96045_evm0-E2-1564476830-441916Branchiostoma lanceolatumexon
BL96045_evm0-E3BL96045_evm0-E3-1564476830-441918Branchiostoma lanceolatumexon
BL96045_evm0-E4BL96045_evm0-E4-1564476830-441920Branchiostoma lanceolatumexon
BL96045_evm0-E5BL96045_evm0-E5-1564476830-441922Branchiostoma lanceolatumexon
BL96045_evm0-E6BL96045_evm0-E6-1564476830-441924Branchiostoma lanceolatumexon
BL96045_evm0-E7BL96045_evm0-E7-1564476830-441926Branchiostoma lanceolatumexon
BL96045_evm0-E8BL96045_evm0-E8-1564476830-441928Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000338genomeSc0000338:251668..258233 +
Properties
Property NameValue
Transcript idBL96045_evm0
Biotypeprotein_coding