transcript:BL96052_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96052_evm0
Unique Nametranscript:BL96052_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96052_evm0

>transcript:BL96052_evm0-protein ID=transcript:BL96052_evm0-protein|Name=transcript:BL96052_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=311bp
MADVRRNSGDPGTGRITGKARDKKPGSSAQICRYDELPVWKKIYMCPHVV
SGYLTDLSTLQCLKSTYKLTNETGNVLTHVVPAMAFLILALYDHHVTIPG
RHGDDMDYVISAIYFTSCQVVLLFSTTYHIFTPHRCRSVFTLGLGLDLFG
IVVTILAVLSTFVAYCFRCSMFWQTFYQCLCVAMVIPYAAMFLHPKYRFH
WVRPENRLIGIGPPLAIVSFAFIAQSYHYHGGWTSDTAWIYPARCFRNGG
IYIAAFVLFHIKNIPQVWFPGRFDYVGHGHQWWHMAVVLGLLDWRDALFV
FQSLQQQSLTC
Run BLAST on NCBI

mRNA from alignment at Sc0000357:221020..224860-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96052_evm0 ID=transcript:BL96052_evm0|Name=transcript:BL96052_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=3841bp|location=Sequence derived from alignment at Sc0000357:221020..224860- (Branchiostoma lanceolatum)
ATGGCGGACGTCAGACGTAACTCAGGTGACCCTGGCACCGGCAGAATCAC
AGGTAAGGCCCGCGACAAGAAGCCAGGTATATTTTACTATACATCCGTTC
GGATTGCATTAGCAGTTGTAAGATCTCGCTTCCATAAATCACAGTATGAC
GATACACACAGTGGCAGAAATGCTTCAGTGAGCAAAGAATGCCGGTCGTC
GCAAATGTTTTGGGAGTGACCGTCTGACAGAAAAACCCGTCGGACCACTC
TTGGGTTTACCTACATGTAGTTATTATTGGGTTTGCCGGTTCGGTGTCAA
CAAGTAATACACTCAAGATCAATGTATAGTTTGCTTCGTAGGAAAAGCAA
ACGTATACATATGTTGTGTCATTTCACGAAGTTTCCAGGTAATCTATGTC
TTACGAAAGTCTTTTGTTGTGTCAATAAAGATTGCTATGTCATAATCTAA
TTTCAAAGTTAAAGCGAGACGAGAAAATAACTGGTGCTGAATTTACGATA
TCTTTTATAGCCTAATAGCAATACGTAATTTGTATGTATGCGTTTTCGTG
TTTTTTTCTCTTACAATACTTCATATTTTCTTTCTTTCTTTCTTGTCCTA
TCTAAGGATCGAGTGCTCAAATATGTCGTTATGACGAACTTCCGGTGTGG
AAGAAAATCTACATGTGTCCACACGTAGTGTCCGGGTACTTGACTGATCT
GTCGACGCTTCAGTGTCTTAAAAGGTAGATATTTGGTCTTACTGTAGCTT
TAATTTCAACAAGTGTCATGATATCACAAGTTATATTGCGTTTTTCTTTG
AAAGGTAAATTGAATACAAACCTTAGTCATGACGAGTATGATTCTCAGAA
ATATACACTCTCTCAACTAAGATATAAATCACGTGCATAGACCATCGTCT
TTAATTTGAATGTACACAAAACCCAACAAAGCGTGAGTGGTCAACATGTA
TTCTACAAATTAGAGGACCTGCCCAATCCGTCAATGTTGGACCTTTCTTA
CGTCAAGCTCTGTTATTCAACCCTCTCTAGAACTAGTACAAGTGTATGAA
AGGAATAGGGATGATGATGCGGGCGGTGAGTAAAAATCGAACAAAGAGTG
TACAGATTCAATTGAAACGCAATCTGTCATATCACCCTCTTATTTTCGTT
CAGATGATCACATTCAGACTCTGGCCAGGGGAAGAAATAAAAATGCTCAA
CTTTGCAGCTCCTTGACCTTGGCGCGGAAGGATACATTTTCGGTGCGGCC
GCGCACCGTCACGCCCCTGACACCTGCCGTCATGTCCTCCCACTTGTTGT
CTTGTAATACGTCTCAGACTCCGATGGATGTAGCTAGTGGGGCAAGTAAA
GAATCGAAAAATAATGAGTTGTTGCTTATCACCGTCCACAGCACATATAA
ACTGACGAACGAGACGGGGAACGTCCTGACACACGTGGTTCCCGCCATGG
CGTTCCTCATCCTGGCGTTGTACGACCATCACGTCACCATACCCGGTCGC
CATGGAGACGACATGGATTACGTCATCTCGGCGATCTACTTCACCAGTTG
TCAGGTTTGCAGTTTGAGACTTCTCTCTGGCTAATAGTCTTCTTAGTACG
CATGGAAATCCACGGAGGTCCTTTAGATAATACATTGGGTCCCTTGAAAC
TCCATACCACAAGACACGATGGCTGCTCCCACACTATCACTATATATAAA
CAAACACGCCAAAATTCTAAATAAATCCATCGAAATGATCTTGAGCTAAA
ACCGCGAACACACAAACACATGCAGGTACCCCTTTCGGGGGTCACTGACC
TCTTTCCCGGAGGTAATAATCAAAAACGCGATTAACATGCATGGCCTTCG
CTTGGATACACATTTAAGAAGTGGGCTCGTAGAATTCTAGAAAGCTTAGT
ACATTTGTACTAGTATCTATTCTGACGTTTCCCCGTTTTGCAGGTGGTAC
TGCTGTTTTCCACCACATATCACATCTTCACCCCGCACCGCTGTCGGTCC
GTCTTCACCCTCGGGCTCGGGTTAGATCTGTTCGGCATCGTCGTCACCAT
CCTCGCGGTGCTGTCCACGTTCGTGGCGTACTGCTTCAGGTGTTCTATGG
TAGGTAAAGCGGTCGAATCTCACAGTCAGACGGAAGACGAAGCATGCCGC
TTTTTCGTTAGATCATAGTGCAACGCAGCTTCGCTACGGCTCGCGTGTTG
AGCCAAGCACACTGGGTCACCCCTACTCTTCTCGATAAGTGTGTTGGGTT
CTTAAACGAGTTTTGGCGCTCGAGGCTTACGGAAGTTCCCTCATGCACGG
GGCCGCCAGCTTTACGTCACCATCCTAATGATGAATGCAAGAAGTAGAAA
CTGAGAACACTTTAAAAAAAACATCGACAAGAGGTGGAATGAATTGCGAT
AACTTCAAGGGAAGGGTTTTGACCAAACGGAGCTTATACGTAAGTTACGG
CGCGGTCACATTCGTTGTAGGCAGTCGTACGATTTTGATGTCATTGAATT
TTCAGGCAGGCTGTGACAGAACCAACCGCCGACATGGATCTAAAGCAGTC
TTATCCGTAACACGACAGATGAATTTTGTAGGACACAAGCACAACGGTAT
CCCAAGAATGTCCTCAGTTTGCTATCGTACGACGTATGTGACCGGGCCCT
TAGTAACCACTAAGATTTCGTTTGCACCTGTATTGTATGTCTGATGTTGT
TCTTCTCTGTCCGCAGTTTTGGCAGACGTTCTACCAGTGTCTGTGCGTCG
CCATGGTGATACCGTACGCCGCCATGTTCCTCCACCCCAAGTACCGCTTC
CACTGGGTCCGTCCGGAGAACAGACTGATCGGCATTGGTCCTCCCCTGGC
CATCGTCTCCTTTGCCTTCATCGCACAGTCTTATCATTATCACGGCGGAT
GGACAAGTGATACAGCATGGGTTTGTTAAAACTCACGTCACGTACACAAG
ATTTAGTTTCCCTTCCTTTCCAAAATAAAGCTGTTGGGCACCGGTGTTGT
TATTTTGCTTCACCACTGCATCAGAAATGTCTCATTTCACAAATTTGTCA
TTCATTTTTTTGTCTTACAGATCTATCCCGCCAGATGCTTCAGAAATGGA
GGCATCTACATTGCAGCGTTCGTGTTATTTCATATAAAGAATATTCCGCA
AGTCTGGTTCCCAGGTACGACGACGTTACATGTACATGTTTATAGGTTAT
GTCGGATTTTCCACTTTATTGTGATTTTTATCAGTGCTAGTGGATTCAAC
ACAGCCATATCTAAACATATCTGTTTTTATCTGTAACAGGCCAGCAACAA
AACATGCAACCATTTTAAGAGCTTGGGCTTTGATAATGTCACTCAGTATA
TTAGAACCAGAAAGAAAATATAACAAGAGACAAAATATGCCTTGACCATA
ATTGTGTGCCGTTGTTGAAGAGTAGGCGTTTTCTTTATCATTCCCACTTT
GCATTGATGTTGGTGATTCATGTTGCCGACTCCTTATGCTAGGGTCACAT
TTCCAAAGCGGGACCCGGCCGGGTAGCTTGCGGGAACGAAAAAAGATGAC
AAAACACACAAAGCGTTAAAAGATAACTCCTGACCATAAATCATGTATAT
TCTTGATATGCTTTTTTTATTGTTTTCTCAAACAGCCCGGTCGGGCCCCG
GCTTGAAAAGTTACCCTAGCATTAGCATGGCCGTCAAACTAACAGCGTAA
CTTCATCTCTCCCTAGGCCGGTTCGACTACGTGGGGCACGGGCACCAGTG
GTGGCACATGGCGGTGGTGCTGGGGTTACTGGACTGGAGAGACGCTTTGT
TTGTCTTCCAGAGTCTCCAGCAACAAAGTCTAACGTGTTAG

Coding sequence (CDS) from alignment at Sc0000357:221020..224860-

>transcript:BL96052_evm0 ID=transcript:BL96052_evm0|Name=transcript:BL96052_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=936bp|location=Sequence derived from alignment at Sc0000357:221020..224860- (Branchiostoma lanceolatum)
ATGGCGGACGTCAGACGTAACTCAGGTGACCCTGGCACCGGCAGAATCAC
AGGTAAGGCCCGCGACAAGAAGCCAGGATCGAGTGCTCAAATATGTCGTT
ATGACGAACTTCCGGTGTGGAAGAAAATCTACATGTGTCCACACGTAGTG
TCCGGGTACTTGACTGATCTGTCGACGCTTCAGTGTCTTAAAAGCACATA
TAAACTGACGAACGAGACGGGGAACGTCCTGACACACGTGGTTCCCGCCA
TGGCGTTCCTCATCCTGGCGTTGTACGACCATCACGTCACCATACCCGGT
CGCCATGGAGACGACATGGATTACGTCATCTCGGCGATCTACTTCACCAG
TTGTCAGGTGGTACTGCTGTTTTCCACCACATATCACATCTTCACCCCGC
ACCGCTGTCGGTCCGTCTTCACCCTCGGGCTCGGGTTAGATCTGTTCGGC
ATCGTCGTCACCATCCTCGCGGTGCTGTCCACGTTCGTGGCGTACTGCTT
CAGGTGTTCTATGTTTTGGCAGACGTTCTACCAGTGTCTGTGCGTCGCCA
TGGTGATACCGTACGCCGCCATGTTCCTCCACCCCAAGTACCGCTTCCAC
TGGGTCCGTCCGGAGAACAGACTGATCGGCATTGGTCCTCCCCTGGCCAT
CGTCTCCTTTGCCTTCATCGCACAGTCTTATCATTATCACGGCGGATGGA
CAAGTGATACAGCATGGATCTATCCCGCCAGATGCTTCAGAAATGGAGGC
ATCTACATTGCAGCGTTCGTGTTATTTCATATAAAGAATATTCCGCAAGT
CTGGTTCCCAGGCCGGTTCGACTACGTGGGGCACGGGCACCAGTGGTGGC
ACATGGCGGTGGTGCTGGGGTTACTGGACTGGAGAGACGCTTTGTTTGTC
TTCCAGAGTCTCCAGCAACAAAGTCTAACGTGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96052gene:BL96052Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96052_evm0transcript:BL96052_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96052_evm0-E1BL96052_evm0-E1-1564476830-447197Branchiostoma lanceolatumexon
BL96052_evm0-E2BL96052_evm0-E2-1564476830-447195Branchiostoma lanceolatumexon
BL96052_evm0-E3BL96052_evm0-E3-1564476830-447193Branchiostoma lanceolatumexon
BL96052_evm0-E4BL96052_evm0-E4-1564476830-447191Branchiostoma lanceolatumexon
BL96052_evm0-E5BL96052_evm0-E5-1564476830-447189Branchiostoma lanceolatumexon
BL96052_evm0-E6BL96052_evm0-E6-1564476830-447187Branchiostoma lanceolatumexon
BL96052_evm0-E7BL96052_evm0-E7-1564476830-447185Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000357genomeSc0000357:221020..224860 -
Properties
Property NameValue
Transcript idBL96052_evm0
Biotypeprotein_coding