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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96070_evm0 >transcript:BL96070_evm0-protein ID=transcript:BL96070_evm0-protein|Name=transcript:BL96070_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=1039bp
MDGDQPLDLSKGSPSKSGTQQTSAAASQARPPRPAAYTQPQVPHPHDKQY
GSQPTSHMYGMERVAHRLPANTRPIGPHQLLRHHSQPQGGTPVGFAVPDR
RALGMPGVDNKAGGPPNTHPPLYSTSAMGRPGQAVEILDSRQPYHPSMPM
RPARSPVAPHTGTERAHSSQAPVRMPVDSRLMMGAAESSIRAMNPASHGS
SALMPITAPVTDPTGARQPRKGTMPSSQSPNRLVAYSADLQRVQLSVSAQ
PVPANPPEFVTLRQCLVENRRLDGGSEMVNSTRTSKVVSDMISHSPRVAV
SDQGDKHPSTSATTTVYSAQPTQHYPPDVINRLNRGMPHPALVAVQRQPN
FHPSMTMQHGPRLSSPPPLIHAPRSGSSSGQKDDGAKSPLSSDSDQKRKT
REIPSQATEYLRAAQMVPVDYRPPPPYVQHRQAHHFQGMQNSSEAAYKDR
ALPQYTTARQQQDYKGYAIQGVAMPPRVSTSEETTIPVQQYFMPAAHLSP
RGSMAHRQPNGDMDMRRVQGDLRPTTVAHPPPLISVAGGVTNASFTQRGG
TLTVSAQGSRGIPATSVQVNASGYMPQQRGDVSGATLVAQIVEKQLLEDG
RQSGRAVPPAWRFKHRRDPVYQQVNGIPTTSKAPETSKGNIPDVIVIEDD
SPPSSVKTDSEPQPTNTAHTREQTISEGFVGKRKSDPTVNPISKLKMDGD
QPLDLSKGSPSKSGTQQTSAAASQARPPRPAAYTQPQVPHPHDKQYGSQP
TSHMYGMERVAHRLPANTRPIGPHQLLRHHSQPQGGTPVGFAVPDRRALG
MPGVDTKAGGPPNTHPPLYSTSAMGRPGQAVEILDSRQPYHPSMPMRPAR
SPVAPHTGTERAHSSQAPVRMPVDSRLMMGAAESSIRAMNPASHGSSALM
PITAPVTDPTGARQPRKGTMPSSQSPNRLVAYSADLQRVQLSVSAQPVPA
NPPEFVTLRQCLVENRRLDGGSEMVNSTRTSKVVSDMISHSPRVAVSDQG
DKHPSTSATTTXPEYVSHNHGVLSPAYSALSSRRYQQVE Run BLAST on NCBI mRNA from alignment at Sc0000395:172003..176830- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96070_evm0 ID=transcript:BL96070_evm0|Name=transcript:BL96070_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=4828bp|location=Sequence derived from alignment at Sc0000395:172003..176830- (Branchiostoma lanceolatum)
ATGGATGGAGACCAGCCTTTAGACCTGTCCAAGGGTTCGCCCAGTAAGTC
AGGCACCCAGCAGACATCTGCAGCAGCCAGCCAAGCGAGGCCCCCACGCC
CTGCAGCATATACGCAGCCACAGGTGATTATATCTTGGAAGTAATCCCAG
AACACCTTGAAGAGTAGGATTGGTAATGACATCTGCTATGTCAATGCTTA
TTTGATAGACATCTTTTACTCCTCTATAATGATAATGACATCATTTGAAC
ATTTGAGGCAATGGGACACATTGAAAATAACAAAATTATAGATTGAAGGA
TGACCCAGTTGAAAGAAAAAAGATATGCAAGGTGTGTTACTAATTGAATC
AAAGTCTTAACAAATTTGATAAAACAAGTAAGATGAAGTGCTATGTTACA
AAAATTGCATTCCAAAATTTGTTTCTGTAGATTTCAATGGCCATGATATG
AGAGGACTTCTTGAAAACTTCAGATGAGCCGTTAGTTAGTTGATGGCTAA
AGATCATATTGCCCTTTGATGTTGTGCTGTTCAAAGTAGTTCTTCCCATT
CCTTTATATTGATATTTTGTACTGTTGTTAAGCAAGTCCTGAATTTTATG
TTAACACTAAAAAGATATGGGTGTATTTATTTGGCTACCTGTTATTGTTG
GTTGTGTAAAGTGAGAGGATTTAATCATATTTGTCTGTGTTTGTGTCTCC
TCAACAGGTTCCACATCCACATGATAAGCAGTATGGATCCCAACCCACCA
GCCACATGTACGGTATGGAGCGGGTCGCACACAGACTACCTGCAAACACC
AGACCCATCGGCCCTCACCAACTTCTACGTCATCACAGTCAGCCACAAGG
AGGGACCCCTGTGGGGTTTGCTGTCCCAGACAGAAGAGCCCTTGGGATGC
CGGGAGTGGATAATAAGGCAGGCGGACCTCCCAATACACACCCTCCACTG
TACAGCACCAGTGCAATGGGCCGGCCCGGCCAAGCTGTTGAGATACTGGA
CAGTAGGCAACCCTACCATCCCTCCATGCCCATGAGACCTGCCCGCTCAC
CTGTGGCCCCGCACACGGGAACAGAAAGAGCACACAGTAGTCAAGCCCCT
GTCAGAATGCCTGTAGACAGCAGGTTAATGATGGGTGCAGCAGAAAGCTC
CATCAGAGCGATGAACCCTGCGAGCCATGGCAGCTCAGCCCTGATGCCTA
TCACTGCTCCTGTCACAGATCCCACAGGAGCCAGACAACCCAGGAAGGGC
ACCATGCCTTCATCACAGAGTCCCAACAGACTGGTAGCCTACAGTGCAGA
TTTGCAGCGGGTACAGTTGTCTGTTTCTGCCCAGCCTGTCCCAGCCAACC
CACCAGAGTTTGTTACCTTGAGACAGTGCCTAGTGGAGAACAGGCGGTTA
GATGGTGGTTCAGAGATGGTAAACTCAACGAGAACGTCAAAGGTGGTGTC
TGATATGATTTCTCATAGCCCCAGGGTTGCAGTTTCCGATCAAGGGGACA
AACACCCGAGTACTTCAGCCACAACCACGGTGTACTCAGCCCAGCCTACT
CAGCATTATCCTCCAGACGTTATCAACAGGTTGAATAGAGGGATGCCACA
TCCTGCCCTTGTAGCAGTGCAGAGACAACCAAATTTTCATCCTTCTATGA
CCATGCAACATGGGCCCAGGCTGTCCTCACCACCTCCTCTCATCCATGCA
CCCAGAAGTGGCTCTTCCAGTGGGCAGAAGGATGATGGGGCTAAGTCCCC
CTTATCCAGTGACTCTGATCAGAAAAGGAAGACGAGGGAAATCCCTTCGC
AAGCCACAGAATATCTGCGGGCTGCTCAGATGGTGCCTGTGGACTACCGA
CCACCCCCACCTTATGTCCAACACAGACAGGCCCATCACTTCCAGGGCAT
GCAGAACTCCAGTGAGGCTGCGTACAAGGACAGAGCACTGCCTCAGTACA
CTACAGCACGCCAGCAGCAGGACTATAAGGGGTATGCCATACAAGGTGTA
GCAATGCCCCCACGGGTCAGCACTTCAGAGGAAACCACCATCCCTGTCCA
GCAGTACTTCATGCCAGCTGCACACCTGTCCCCAAGGGGTAGTATGGCAC
ACAGACAGCCCAATGGTGACATGGACATGAGACGGGTGCAGGGGGATCTC
AGACCCACCACTGTCGCACATCCCCCACCTCTCATCAGTGTTGCTGGAGG
TGTCACAAACGCCAGCTTCACCCAGAGAGGAGGAACCCTCACAGTATCTG
CACAGGGCAGCAGGGGAATCCCGGCCACTTCAGTGCAGGTGAATGCCTCG
GGTTACATGCCTCAGCAGAGGGGCGACGTCAGTGGGGCGACGTTAGTGGC
GCAGATCGTAGAGAAGCAGTTACTGGAAGACGGGCGGCAGTCAGGACGTG
CGGTGCCTCCTGCCTGGAGATTCAAGCACAGACGAGACCCTGTCTACCAG
CAAGTGAACGGAATTCCGACAACTTCAAAGGCTCCTGAAACTTCAAAGGG
AAACATTCCAGATGTAATAGTAATAGAAGATGACTCTCCACCAAGCTCTG
TGAAGACTGACAGCGAGCCTCAGCCCACCAACACTGCCCACACCAGAGAA
CAAACCATCAGCGAAGGGTTTGTAGGGAAGAGAAAATCTGATCCTACTGT
AAACCCCATCTCGAAAGTAATGAAGGGGACTTCTGGAGAAAAAGTGGTAC
CTACCATGCAAGTACAACCCCCTTCTGTNTCGGAAGGTAAAAGGCATTGG
TAGGAGAGGGATGGGCTCTGCCTAGACATAGTGGATTATCAAGACACTGC
TCCTATGGCCCCAAAAAAGGCTATGGGACCTTTACCTTTACCCTACCTTA
TAAATTTCTCAAGAGCTTCATATCATTCTCAGCTATTGAGGAGAGAAAAG
CCAAGGGACATATTGTCACATATATAAGATTAATTGTTGCAAATGTGCTG
TGATATGGTATCTTAGTTATTAGATGTTATAACTTATAGTATGTATGTGG
TAGGAACAGGCAAACCAAATGTTATGGGGCTGCAAACCTGTTTTCCCTCG
GAAGAAAGTTTGGAAGTCTCCTGAGAATGCTTTTACATTAGACTGTTTAA
GATATTAGACTTTAATTTAGAGTATAACATGTTTGGTTTGCTCTCGTATG
TCACTTATTTTCTCAATTTGGTGGTTGTGCTTCAGATTTTACGTAGCTGA
AAATGGATGGAGACCAGCCTTTAGACCTGTCCAAGGGTTCGCCCAGTAAG
TCAGGCACCCAGCAGACATCTGCAGCAGCCAGCCAAGCGAGGCCCCCACG
CCCTGCAGCATATACGCAACCACAGGTGATTATATCTTGGAAGTAATCCC
AGAACACCTTGAAGAGTAGGATTGGTAATGACATCTGCTATGTCAATGCT
TATTTGATAGACATCTTTTACTCCTCTATAATGATAATGACATCATTTGA
ACATTTGAGGCAATGGGACACATTGAAAATAACAAAATTATAGATTGAAG
GATGACCCAGTTGAAAGAAAAAAGATATGCAAGGTGTGTTACTAATTGAA
TCAAAGTCTTAACAAATTTGATAAAACAAGTAAGATGAAGTGTTATGTTA
CAAAAATTGCATTCCAAAATTTGTTTCTGTAGATTTCAATGGCCATGATA
TGAGAGGACTTCTTGAAAACTTCAGATGAGCCGTTAGTTAGTTGATGGCT
AAAGATCATATTGCCCTTTGATGTTGTGCTGTTCAAAGTAGTTCTTCCCA
TTCCTTTATATTGATATTTTGTACTGTTGTAAAGCAAGTCCTGAATGCAG
CAAAATTTTATGTTAACACTAAAAAGATATGGGTGTATTTATTTGGCTAC
CTGTTATTGTTGGTTGTGTAAAGTGAGAGGATTTAATCATATTTGTCTGT
GTTTGTGTCTCCTCAACAGGTTCCACATCCACATGATAAGCAGTATGGAT
CCCAACCCACCAGCCACATGTACGGTATGGAGCGGGTCGCACACAGACTA
CCTGCAAACACCAGACCCATCGGCCCTCACCAACTTCTACGTCATCACAG
TCAGCCACAAGGAGGGACCCCTGTGGGGTTTGCTGTCCCAGACAGAAGAG
CCCTTGGGATGCCGGGAGTGGATACTAAGGCAGGCGGACCTCCCAATACA
CACCCTCCACTGTACAGCACCAGTGCAATGGGCCGGCCCGGCCAAGCTGT
TGAGATACTGGACAGTAGGCAACCCTACCATCCCTCCATGCCCATGAGAC
CTGCCCGCTCACCTGTGGCCCCGCACACGGGAACAGAAAGAGCACACAGT
AGTCAAGCCCCTGTCAGAATGCCTGTGGACAGCAGGTTAATGATGGGTGC
AGCAGAAAGCTCCATCAGAGCGATGAACCCTGCGAGCCATGGCAGCTCAG
CCCTGATGCCTATCACTGCTCCTGTCACAGATCCCACAGGAGCCAGACAA
CCCAGGAAGGGCACCATGCCTTCATCACAGAGTCCCAACAGACTGGTAGC
CTACAGTGCAGATTTGCAGCGGGTACAGTTGTCTGTTTCTGCCCAGCCTG
TCCCAGCCAACCCACCAGAGTTTGTTACCTTGAGACAGTGCCTAGTGGAG
AACAGGCGGTTAGATGGTGGTTCAGAGATGGTAAACTCAACGAGAACGTC
AAAGGTGGTGTCTGATATGATTTCTCATAGCCCCAGGGTTGCAGTTTCTG
ATCAAGGGGACAAACACCCGAGTACTTCAGCCACAACCACGGNACCCGAG
TACGTCAGCCACAACCACGGTGTACTCAGCCCAGCCTACTCAGCATTATC
CTCCAGACGTTATCAACAGGTTGAATAG Coding sequence (CDS) from alignment at Sc0000395:172003..176830- >transcript:BL96070_evm0 ID=transcript:BL96070_evm0|Name=transcript:BL96070_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=3120bp|location=Sequence derived from alignment at Sc0000395:172003..176830- (Branchiostoma lanceolatum)
ATGGATGGAGACCAGCCTTTAGACCTGTCCAAGGGTTCGCCCAGTAAGTC
AGGCACCCAGCAGACATCTGCAGCAGCCAGCCAAGCGAGGCCCCCACGCC
CTGCAGCATATACGCAGCCACAGGTTCCACATCCACATGATAAGCAGTAT
GGATCCCAACCCACCAGCCACATGTACGGTATGGAGCGGGTCGCACACAG
ACTACCTGCAAACACCAGACCCATCGGCCCTCACCAACTTCTACGTCATC
ACAGTCAGCCACAAGGAGGGACCCCTGTGGGGTTTGCTGTCCCAGACAGA
AGAGCCCTTGGGATGCCGGGAGTGGATAATAAGGCAGGCGGACCTCCCAA
TACACACCCTCCACTGTACAGCACCAGTGCAATGGGCCGGCCCGGCCAAG
CTGTTGAGATACTGGACAGTAGGCAACCCTACCATCCCTCCATGCCCATG
AGACCTGCCCGCTCACCTGTGGCCCCGCACACGGGAACAGAAAGAGCACA
CAGTAGTCAAGCCCCTGTCAGAATGCCTGTAGACAGCAGGTTAATGATGG
GTGCAGCAGAAAGCTCCATCAGAGCGATGAACCCTGCGAGCCATGGCAGC
TCAGCCCTGATGCCTATCACTGCTCCTGTCACAGATCCCACAGGAGCCAG
ACAACCCAGGAAGGGCACCATGCCTTCATCACAGAGTCCCAACAGACTGG
TAGCCTACAGTGCAGATTTGCAGCGGGTACAGTTGTCTGTTTCTGCCCAG
CCTGTCCCAGCCAACCCACCAGAGTTTGTTACCTTGAGACAGTGCCTAGT
GGAGAACAGGCGGTTAGATGGTGGTTCAGAGATGGTAAACTCAACGAGAA
CGTCAAAGGTGGTGTCTGATATGATTTCTCATAGCCCCAGGGTTGCAGTT
TCCGATCAAGGGGACAAACACCCGAGTACTTCAGCCACAACCACGGTGTA
CTCAGCCCAGCCTACTCAGCATTATCCTCCAGACGTTATCAACAGGTTGA
ATAGAGGGATGCCACATCCTGCCCTTGTAGCAGTGCAGAGACAACCAAAT
TTTCATCCTTCTATGACCATGCAACATGGGCCCAGGCTGTCCTCACCACC
TCCTCTCATCCATGCACCCAGAAGTGGCTCTTCCAGTGGGCAGAAGGATG
ATGGGGCTAAGTCCCCCTTATCCAGTGACTCTGATCAGAAAAGGAAGACG
AGGGAAATCCCTTCGCAAGCCACAGAATATCTGCGGGCTGCTCAGATGGT
GCCTGTGGACTACCGACCACCCCCACCTTATGTCCAACACAGACAGGCCC
ATCACTTCCAGGGCATGCAGAACTCCAGTGAGGCTGCGTACAAGGACAGA
GCACTGCCTCAGTACACTACAGCACGCCAGCAGCAGGACTATAAGGGGTA
TGCCATACAAGGTGTAGCAATGCCCCCACGGGTCAGCACTTCAGAGGAAA
CCACCATCCCTGTCCAGCAGTACTTCATGCCAGCTGCACACCTGTCCCCA
AGGGGTAGTATGGCACACAGACAGCCCAATGGTGACATGGACATGAGACG
GGTGCAGGGGGATCTCAGACCCACCACTGTCGCACATCCCCCACCTCTCA
TCAGTGTTGCTGGAGGTGTCACAAACGCCAGCTTCACCCAGAGAGGAGGA
ACCCTCACAGTATCTGCACAGGGCAGCAGGGGAATCCCGGCCACTTCAGT
GCAGGTGAATGCCTCGGGTTACATGCCTCAGCAGAGGGGCGACGTCAGTG
GGGCGACGTTAGTGGCGCAGATCGTAGAGAAGCAGTTACTGGAAGACGGG
CGGCAGTCAGGACGTGCGGTGCCTCCTGCCTGGAGATTCAAGCACAGACG
AGACCCTGTCTACCAGCAAGTGAACGGAATTCCGACAACTTCAAAGGCTC
CTGAAACTTCAAAGGGAAACATTCCAGATGTAATAGTAATAGAAGATGAC
TCTCCACCAAGCTCTGTGAAGACTGACAGCGAGCCTCAGCCCACCAACAC
TGCCCACACCAGAGAACAAACCATCAGCGAAGGGTTTGTAGGGAAGAGAA
AATCTGATCCTACTGTAAACCCCATCTCGAAACTGAAAATGGATGGAGAC
CAGCCTTTAGACCTGTCCAAGGGTTCGCCCAGTAAGTCAGGCACCCAGCA
GACATCTGCAGCAGCCAGCCAAGCGAGGCCCCCACGCCCTGCAGCATATA
CGCAACCACAGGTTCCACATCCACATGATAAGCAGTATGGATCCCAACCC
ACCAGCCACATGTACGGTATGGAGCGGGTCGCACACAGACTACCTGCAAA
CACCAGACCCATCGGCCCTCACCAACTTCTACGTCATCACAGTCAGCCAC
AAGGAGGGACCCCTGTGGGGTTTGCTGTCCCAGACAGAAGAGCCCTTGGG
ATGCCGGGAGTGGATACTAAGGCAGGCGGACCTCCCAATACACACCCTCC
ACTGTACAGCACCAGTGCAATGGGCCGGCCCGGCCAAGCTGTTGAGATAC
TGGACAGTAGGCAACCCTACCATCCCTCCATGCCCATGAGACCTGCCCGC
TCACCTGTGGCCCCGCACACGGGAACAGAAAGAGCACACAGTAGTCAAGC
CCCTGTCAGAATGCCTGTGGACAGCAGGTTAATGATGGGTGCAGCAGAAA
GCTCCATCAGAGCGATGAACCCTGCGAGCCATGGCAGCTCAGCCCTGATG
CCTATCACTGCTCCTGTCACAGATCCCACAGGAGCCAGACAACCCAGGAA
GGGCACCATGCCTTCATCACAGAGTCCCAACAGACTGGTAGCCTACAGTG
CAGATTTGCAGCGGGTACAGTTGTCTGTTTCTGCCCAGCCTGTCCCAGCC
AACCCACCAGAGTTTGTTACCTTGAGACAGTGCCTAGTGGAGAACAGGCG
GTTAGATGGTGGTTCAGAGATGGTAAACTCAACGAGAACGTCAAAGGTGG
TGTCTGATATGATTTCTCATAGCCCCAGGGTTGCAGTTTCTGATCAAGGG
GACAAACACCCGAGTACTTCAGCCACAACCACGGNACCCGAGTACGTCAG
CCACAACCACGGTGTACTCAGCCCAGCCTACTCAGCATTATCCTCCAGAC
GTTATCAACAGGTTGAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000395 | genome | Sc0000395:172003..176830 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96070_evm0 |
| Biotype | protein_coding |
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