transcript:BL96072_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96072_evm0
Unique Nametranscript:BL96072_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96072_evm0

>transcript:BL96072_evm0-protein ID=transcript:BL96072_evm0-protein|Name=transcript:BL96072_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=340bp
MEKYTNLQELGQGAFGKVYKAEREEDGSTQALKCLTVDSNEKGDVILRDI
RALQQVGEHQNIMQFTDAFTDGAGLNTPALNVWLVLEYCKGGPLDIFILD
SEPDRTTVLQLLCDTAEGVAYLHGKNVVHGALKPENVLVDNSGQRPIAKI
ADFGIARVCEQSGWDINSYYMQTAVGTHRHRLYLSPEIIGPLLAQRPDQV
TYTTKTADIFALGLIIAAILDPTTVLARPRNVTPFFPDPVNGQSMALAEI
MVAHPEYPVAEMLMRYAPPGCPEKTLVLTMLAADPHQRPTSEQVLDILRQ
ITNSPHGANIETPPAMPPPPPYTVVDVSPDIPESTAWKDL
Run BLAST on NCBI

mRNA from alignment at Sc0000398:54801..58787-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96072_evm0 ID=transcript:BL96072_evm0|Name=transcript:BL96072_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=3987bp|location=Sequence derived from alignment at Sc0000398:54801..58787- (Branchiostoma lanceolatum)
ATGGAGAAATACACAAACCTACAGGAGCTCGGACAGGGTGCGTTCGGTAA
GGTGTACAAGGCGGAACGTGAGGAGGACGGCAGCACACAGGCACTGAAGT
GTCTCACCGTGGACTCAAATGAGAAAGGCGACGTCATTCTGAGGGATATC
CGTGCTCTACAGCAGGTAAGACTAATGCAACAATTACATGTTTGTTTGTT
TTTTTGGAAAAAGAGCAGGAAAAGCTGTAGCTCTTGTTTTCAATGTTTCA
ACATGGAGTTTCAATAATATTTCGTTTTTTTCTTCGTCCATGTGTGAAAA
AACCTAGCTGTTGAATCCGCAGTACAGCTGCAGTGGGTATTGAAAGAGCG
CTTAAATTAAGGAAAGTAAAAGTAAAACCGGAAAGACCCAGCGTATAGGC
TAATGATTTCTACAGTTCTAACTAACCTTGAGATCCCGCAAAGATAGTCT
GATATTTGTTAATTTGTCTGAAACGTAGGTCGGAGAACACCAAAATATCA
TGCAGTTCACTGACGCGTTCACAGACGGCGCAGGCTTGAACACCCCGGCA
CTGAACGTGTGGCTGGTGCTGGAATACTGCAAGGGAGGCCCCCTGGACAT
GTAGGTGCTGTACAATATTTGCACTACAATCTCTCCAGACGTCCGTCAGT
CAAACTACATATACAAACAAATACACAGGTAATTAGAGGGATAAAGAATT
CCCTTGTGTTTGATATATTGTTATACATATTAGGCTGTTAAGGGGCAGAA
ATAAAGAACTTACAATGTCCCCAATTCTATTGTTCTGCACAGCTTCATCT
TAGACAGCGAGCCTGACAGAACCACGGTTCTGCAATTACTGTGTGACACG
GCAGAGGGCGTTGCTTACCTGCATGGTAAAAACGTCGTCCACGGAGCCCT
CAAGCCTGAGAACGTCTTGGTGGACAACTCCGGGCAGAGACCGATTGCCA
AGGTCAATTCTTTCTGAAAGATTTTGTCACTCTGTAGCCTGTGTGCCAAC
CTTTTTAGTTTTAGGCCACAGCATTTATGGATGACGTCATCTTCCGACTC
CAAGTTTCATGCACGCGGGACAAAAAACAAGTATCTCAACCAACAAGTTA
TTCCTGTATTCAAAGTAAGTAACATTGGTGTCAACGTCAAAGTCATTATA
GATATAATAAAATGAGCATTTCTATGTCAATGAAAACTAAGACATGTAAT
ACCAGGGCACACCTCTATCCATGTTTTTTTCCAAACCGGTAACTTTGTCT
TATAGATTCCTTGATCGCGAAGAAAAACAAACCTTCAAGGACAGTTTTCG
AAAAAACTGTCCTTGAAGGTTTGTGTATACACGCATAAAAGGAATGAAAT
ACAACAGTTAATTGTATTTTTAAAAAATGGGAAAAAAACAATACTGGCCT
AAACTCGATAGGTTAACTAAGCACAAATATAGCGGAACAAACACCACCTC
CTTTTCTAAACGTCTATTGCGAACCAGTCGGCAATGATGACACCAACAGC
AATGATCGTGTGTGGTACCGTGAGATAAATCAAGGTTTTTATAGCACAAA
AAGGACACAGAGACACCTTATCTCTATCGTTCTTCTGAACAGAGCTGCCA
TTCCTCCGAAATCTCTCGTCTTTTTCACTCATTTGTAAAATGTGCAAATC
CCTATTTTCGGCATGTCACGTTTTTGCGACAGAACTGACAGAAGAACTGG
CATATGTTTCCATTTTCGCTCGCTGTGGTCTTAGTACGTTTTCTGTCGCT
CCCTGGCCAAAAACAAAACTTGTCTTCTATTCATCGCCGCTTAGATTGCA
GATTTCGGCATTGCCCGTGTCTGTGAGCAGAGTGGTTGGGACATAAACAG
TTACTACATGCAGACTGCGGTCGGTACCCATCGTCACAGGCTGTACTTGT
CGCCTGAAATCATCGGACCACTGCTGGGTAAGACGATTGATAATTACTTT
TCGGTGACGAAAGTCTGGTGGGGAGCCTGCCAGTATAGTATTGGGCCCAA
TGGTAGAGCATACATTAGTGTCCACACCGGTTTGAAAGTATTCGAGAAAT
TCCACTTGAGTCCACGAATACATTCCTAGGAAATCTATATCTCATGTTCT
GGACATGTCATGGTCATGATTTGTGGGTGATGGATGGCCTTTGGGGTTGG
ACAAAAGTGGCATAAATTTAGAGTTAGTTATGTCCTTTCAGAACAACAAA
ACGTTACAATCCATAATCCACAATATGACGTAGACCTTATCTCGGGTACT
TGTTGTTCATAACTCATCAAGCAGTATTATTGTCAACAGCACAACGGCCT
GATCAGGTGACCTACACCACCAAGACTGCTGATATCTTCGCCTTGGGTCT
GATCATAGCCGCAATCTTGGATCCCACGACAGTTCTGGCCAGACCGAGAA
ACGTTACACCTTTCTTTCCGGACCCCGTGAATGGACAAAGCATGGCTTTG
GCTGAGATCATGGTCGCACATCCGGAATACCCGGTGGCAGAAATGCTGAT
GCGGTATGCCCCGCCTGGGTGTCCGGAAAAGGTACGTGATGAGAAGCTGA
GTGAACCCAGGGTCCAAATGTATAGAAAAGGTCATAAAGCAGGAGACATC
AATGACATCAACGTAATAAAAAAGATAGCACAGAACATGTAGAATAAGAT
TCGTCTTCCTTTGAACATCCCCTGATTAAAAAGTGATCTCCTAATTCCGA
AGTAGTTAAAGCCTGCAATGTCATAATCTTTAACCCATAATATCATAATT
TTTAACAAACAAAAGTGTAACTGATATCAAATAGTTTACCTGACATTGGA
CGATGTGACATATGTGACAAACCAACTGTATTTTCACCCAGACCCTGGTC
CTGACCATGCTGGCAGCTGATCCTCACCAGAGACCAACATCAGAACAGGT
CCTCGACATCCTCAGACAGATCACCAACTCTCCTCACGGGTGAGTCTTGA
TACGTCCTACCATCATTATATCTTTGTAATCAGCTGTGATATAAGGGGGG
GGGGGTTACGTTCGCTATATCAACATTGTTACTTCTGTAACTATTCGATC
GCCACCAGAGCAGATCCTCAGAGCCAATATTGCAGAAATGAAATTCTAAG
ACGAGAGTGCAACGCCAACGAATGAGTGACTCGGATGCAATCTGAATCAG
ATTTCACAACGGCGTGGCTATCATAGGGTTGGTAGTCGGACTCAAGAGGG
GGAATCAAGTGATTTGTAGTACATAAATGTCATCGCTGTAACCTCATTAG
CACAGCATGACATAATCGGAGTGGCGCAAATCAATGAAGTGTAGGGTCAG
CTTTAGCTAGTAACTAAATAGTAACTAAAGATCTGTCACATATTGTTAAG
GTTTGAGCTTTGATCCAACACAAAGAAGGAACTCACCATGAGTTTTTGGT
CGGAACTCCACCTTCCTCAAATGTGTGATTCACTGCGTTGAACGTGCTGA
CGTCAACAGTGAATCAAAAGAGGTGGGAAGACGACACCTTCCATCGTCTC
GGTTCAGAGAGGGCTGATGGGCCCTGATCAGATAAGGTGCGAGGTGCGCA
TCTTGGATACGGAACAGCACTACTTTGTGACGGGGGCATCAAAGAGGCAA
TCTACATCAGGGCCTATCACGCTTCCGGCTTCCCGGCAGCGCAGTGAATC
AAACATTTGAGGAAGGCTGGAGTTCCGACTGTTAACTGATAATGAGTTCC
TTCTTTGTGCTGGATCAAAGCACAAACCTTTACAATATGTACTTTACCAG
CACAGATGAGCTTTCATTCGAAAGATCTATCACGTTTCCCATCGGCAGCA
GTGCTACTACGACAAGATAATTGGATAGGTCTAAGACAAACTACTGTAAT
AATTCCAGCAATGGCTATTCTTACTTTTTTTTAGAGCCAACATCGAAACT
CCTCCGGCGATGCCTCCGCCCCCACCATACACTGTAGTGGATGTCTCTCC
TGACATTCCAGAGTCTACGGCGTGGAAGGATTTGTAA

Coding sequence (CDS) from alignment at Sc0000398:54801..58787-

>transcript:BL96072_evm0 ID=transcript:BL96072_evm0|Name=transcript:BL96072_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=1023bp|location=Sequence derived from alignment at Sc0000398:54801..58787- (Branchiostoma lanceolatum)
ATGGAGAAATACACAAACCTACAGGAGCTCGGACAGGGTGCGTTCGGTAA
GGTGTACAAGGCGGAACGTGAGGAGGACGGCAGCACACAGGCACTGAAGT
GTCTCACCGTGGACTCAAATGAGAAAGGCGACGTCATTCTGAGGGATATC
CGTGCTCTACAGCAGGTCGGAGAACACCAAAATATCATGCAGTTCACTGA
CGCGTTCACAGACGGCGCAGGCTTGAACACCCCGGCACTGAACGTGTGGC
TGGTGCTGGAATACTGCAAGGGAGGCCCCCTGGACATCTTCATCTTAGAC
AGCGAGCCTGACAGAACCACGGTTCTGCAATTACTGTGTGACACGGCAGA
GGGCGTTGCTTACCTGCATGGTAAAAACGTCGTCCACGGAGCCCTCAAGC
CTGAGAACGTCTTGGTGGACAACTCCGGGCAGAGACCGATTGCCAAGATT
GCAGATTTCGGCATTGCCCGTGTCTGTGAGCAGAGTGGTTGGGACATAAA
CAGTTACTACATGCAGACTGCGGTCGGTACCCATCGTCACAGGCTGTACT
TGTCGCCTGAAATCATCGGACCACTGCTGGCACAACGGCCTGATCAGGTG
ACCTACACCACCAAGACTGCTGATATCTTCGCCTTGGGTCTGATCATAGC
CGCAATCTTGGATCCCACGACAGTTCTGGCCAGACCGAGAAACGTTACAC
CTTTCTTTCCGGACCCCGTGAATGGACAAAGCATGGCTTTGGCTGAGATC
ATGGTCGCACATCCGGAATACCCGGTGGCAGAAATGCTGATGCGGTATGC
CCCGCCTGGGTGTCCGGAAAAGACCCTGGTCCTGACCATGCTGGCAGCTG
ATCCTCACCAGAGACCAACATCAGAACAGGTCCTCGACATCCTCAGACAG
ATCACCAACTCTCCTCACGGAGCCAACATCGAAACTCCTCCGGCGATGCC
TCCGCCCCCACCATACACTGTAGTGGATGTCTCTCCTGACATTCCAGAGT
CTACGGCGTGGAAGGATTTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96072gene:BL96072Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96072_evm0transcript:BL96072_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96072_evm0-E1BL96072_evm0-E1-1564476830-456721Branchiostoma lanceolatumexon
BL96072_evm0-E2BL96072_evm0-E2-1564476830-456719Branchiostoma lanceolatumexon
BL96072_evm0-E3BL96072_evm0-E3-1564476830-456717Branchiostoma lanceolatumexon
BL96072_evm0-E4BL96072_evm0-E4-1564476830-456715Branchiostoma lanceolatumexon
BL96072_evm0-E5BL96072_evm0-E5-1564476830-456713Branchiostoma lanceolatumexon
BL96072_evm0-E6BL96072_evm0-E6-1564476830-456711Branchiostoma lanceolatumexon
BL96072_evm0-E7BL96072_evm0-E7-1564476830-456709Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000398genomeSc0000398:54801..58787 -
Properties
Property NameValue
Transcript idBL96072_evm0
Biotypeprotein_coding