transcript:BL96073_evm3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96073_evm3
Unique Nametranscript:BL96073_evm3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96073_evm3

>transcript:BL96073_evm3-protein ID=transcript:BL96073_evm3-protein|Name=transcript:BL96073_evm3|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
MEVVSYLFKTADEEKCIPILENMGYRVGHSLAERFTKDSSRFKDELDIMK
FICKDFWTSVYKKQVDNLRTNHQGVYVLQDNRCRVLTQISASKQYLEAAP
NYLAFPCGLIRGALANLGISCIVTAEVQNMPACKFQIMIQRSQ
Run BLAST on NCBI

mRNA from alignment at Sc0000398:62386..67491-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96073_evm3 ID=transcript:BL96073_evm3|Name=transcript:BL96073_evm3|organism=Branchiostoma lanceolatum|type=mRNA|length=5106bp|location=Sequence derived from alignment at Sc0000398:62386..67491- (Branchiostoma lanceolatum)
ATGGAAGTTGTTTCTTACCTTTTCAAGACGGCAGACGAGGTAGCACTTCT
ATTTTAGCTTCGGTCAGATAGTCGTGAACATGCTCGGTTGTATTAGAATC
CATTCTTTGTTGATATAATGAAAAGAAGAGCATATTTAATGTGTTAAAAT
GTTGTGGGAGGGGTGCCAGATTTTGTGGTTTTCACATTGTTCCTTTGATA
AATCAAATATCTGTTTACGTAGCCACGTAAAGAATGTACATGCATGTAGT
ACGTTATCAACTTTTCATGTGCTCCTGTTTTCTTGACAGGAAAAATGCAT
TCCCATCCTGGAGAACATGGGTTACCGTGTGGGACACAGTCTAGCAGAAA
GGTAAATGGAAAATCTCCTTGGGAAAATCTAACGTTTGACTAAAACATCA
GTGATCAGAAATTCCCTCTATTTAAAAACAATCCATGTTCAAGAATTAAT
GCTCTTGAATGATTGATACCTCAGGATATTTCCTCTGCATTTCTTTGAAG
AAGGCAGTTTCAATACCCTCTTGATCAGAAGGATTGCTTATAAGTCCTTG
CTTATACAATGTGCAACATCTTCTCAAATCCTCAGCATTGATCACCTTTC
CCTCATGTCCAGATTTACCAAGGACAGCTCACGGTTTAAGGATGAGCTGG
ACATCATGAAGTTCATCTGTAAGGATTTCTGGACGAGCGTTTATAAGAAA
CAAGTGGACAACCTGAGAACCAACCATCAGGTGAGACAACAACATTTGTC
ACAAACTCATATTACACCTATGATAGTACTACTAAACTTGTTTCCGATTT
GGGATGGGATACTTTAAAGGATAGAAGGACAGCTAGTAGACTTACAGTTC
TGCAAAAGGCAAGACACCATAAGATAGCCCTACCGGTCGAAGGTCATCTG
TCACCTGCACCGCGCCAATTGCGACACTCAAACCAAAATTCATACAAGAG
TATACCATTCCACAAAGACTGTTACAGATATTCTTACTACCCTCGTACTG
TGAGGGAATGGAATTTACTGCCACAAGAGGTCACGGAGACAACTGATCCT
CCCAAGTTCAAGGAGGCGGTGCTCCAGCACCTCAGAGGACAATAAGCGCA
GCGCACTCCCCTAGACGCTTTACTCCAACAAGAGGGGTGTTGTCTAGTAA
CAGATCAAGATCAAGAACACCTGAGTTTCGACCAGCCAGGATGTATGAAC
GGAAGCAGCCCCAATGCAGACCTTCTGCTTAAAGACAGAGACAAAGATAA
AGAACGATTAAGAGAAATGTTTTTGTGGCCCAGTTGTCCAAATTGATTGG
AAAATAGTTTGGCACCAGACTCTGCATCAAATGATCTATATGTACCATTA
CTAGTTAAGTACGATATCTGTAATGCACTAAATCAAGGCACAACCCTAGA
AGAAATGCAAATATTTGAAATACTGTATTTTGGAAAATAATCACATTGTC
TCCGAATACAATCAGACACTAGCAATAAACAATAAGCAATAAACCCTTTA
AATACCCCGTGCCTGATCCCTCAACCTACCGAGGTTTGGCATGTACATGA
AGAAGAAGGTAAAAAAACGTGTATCATTGAATATATATATATGTTAAGCC
CTTTTGGTTAACCTTCTTCCTGCAGTGCCATTTTTTTTACATTAAGAAAC
TGTCATTATTACTTTGTATCAAATGTTTTGCAACAATGATGCTACTAATC
TCACTACAGTTTAACGCTTGGAACCATTAATTCGACACCTTTACGCCAAC
GCACCATTGTATGATAAATCAACAAGCGGACTTAAGAGTATTTCGGTAAT
CATTGACTGTATCGTGTACGTTGTTTTTGCCGCAATTGCTACATGTGTGT
CACTCTTTCAAATCATTGACATATCTCGGAAAAATTACGTCTTCAACATC
GGACCCGATATGACGGCGCCTTGCGTAATCTGTTCCAAACGAACCATTAA
TCCGACAGTATACAACAATGTCGCTGTTTACCGATAATTTTAATAGTCAG
TACAACGGTTATTTCCCAATTTCTCTGTCAACCAACGGCCACTTACACTA
GTTACTATAGGCGCCACATGTCACAGTCGGTACGCCGCCGATGCACTCAT
GATACTGCGGTCAAAATAAATAGTCCTGAAAAACATCGTCCTGCGGCAGG
TCCGTTCTTATGTTCCATTGCACTGCCGTGGCTATTATAAACCTTGAGAT
CTAATACTTGAGCCTGCTACAGCTATCGAAATGCGAGTAACTAACGTTTG
CTTGCACTTCTGCCCGGTAAACAGAAATTTATGCCAGGCGGAAACGGAAA
CTATCCTAACACAGGTCATCGGCCTGTACCAAGCGAACATCACTGCGGTA
GAGGGGAGTAAGACTCTCTTGTGTCGCTATCGTCTTAGCCGCTGTGGGAA
TATATGTTCCGGAAATATAAAAATGACAAGAGTCTTTAATAAAGAATGCA
AAAGCTTTACTTTTACATTAATTGCTGCCAAAATTCATTTATTTAATAGT
ATAACATTGTCATTGGCATGCTAAACCCGTAGTGAGACGGTTGGTATGGT
CTTCAAGACCTGTTTGCACTAGCTTACACGTGGCTCCGGACTTTTACATT
TGAAAATAGGGGAAAATAGAAAGAGTAGTTAAGTTGTTGACGTCGGTTAC
TATTTCCAATTGCTGATGATGTATAAACACTTGTTGGACATGCCTATTTA
ATAATCCAAGACAGGAAAGGGGAAAAATGAATAAATAGATAAATATAAAT
GACTGCGTCGTCTGCTATTCCTCACGTGATCACCCGTATGATTCTGGGAA
TATTCAAAATGGCGGTTTCCGACGGCGCGCGTTCGCAAAGCCTCTGGATA
ATTCGCGCTTTGTTTGGATCAAGGACAAAACTAAACTTATTTGCTGTTAT
TGACGGACATATTGTTTATTCCTCTTTTGATCAATACAAGTATAGATATG
TAATGTGATGATATGAAGAAGAAAATGTCGACATTGTGACGGTGTGTGAC
CGCTGCTCCCTCTCCCATGAGATACATAACGTTAAAACCAACGGTTAGTA
AATTGACGACCTCGTCATTGCAAAGTTTGATCTTCATGAACTTACGACTG
TACCTTTTTGACGTCAGTACTTAACTCGTATTGGAATGCAATTAACAGTT
TTTGCATCAACCTGCTGAATCTTAATTGGCAAGCCAATACTTAAAAGTGT
CGAATTAAAAGGGTGTCGAATTAATGGTTCCTAGCGTTACATGCTATATA
TCTTCTCAAGCTTACATAGCATATGCATGGCATTGATTGACAGGTGTCTG
TCTTGTTTACAGGGTGTGTACGTTCTACAGGACAACAGATGTAGAGTTCT
CACTCAGATCTCAGCCAGTAAACAGTATCTGGAGGCTGCACCGAATGTAA
GGGTGTACTCTATATGTATCAGAAGTTGGAAATGCTAATATTACTAAGGA
TACATGCAGAAAAAAATATATTTTACCTCAGAACTATGTACACCTTGTCT
CTGCACACATGCATGCAAGAGGATGTGTATGCACACAATGTGCACTTAGT
CTAGTATGGCACTCATGGTGTCATATTAAGGGAGCACACCCCAGTTTATT
TGGGGTTTCAATCGGAGGCTGCGCACCCTCAAGTCTAGGTACTGTCTCTT
CCAGGGAATTATTCCGAAGTAAATCAACTGTGTATGGGGTGAAAGCCTAT
CCCTTCCGCTACAAGACCAACTGAGTTTTGTTTCTTCAACCTCTCTAATT
TTGGTAAATTACAAGAAAAAATCGTAACTTTCACGTAAAAAATGATGCGC
AAAATTTGGCATTTTCGTGTAGGATAAAACTTGAAGAAAACATTTTTCCT
GCAGTAATGATGTTGTCAGAAAGAGGAAAACCTAGTGTATAATACGCAAC
AAAGGTCAGTCTTGGGTCAGGGGACACCTCACTATCAACGCCGATGGATA
TCCGGAAATACGGCTTGGACCGAAACGCAATTTTCACCAAAAACACACCA
TTTCATACGCTTTTCAGCCATGCTAGTAATAGTAGTAGTATCTAATATCA
GTTCGAAGCACATTATGTGAAATGTGAACTCAAACCCAGCCCCTCGAAAC
CCTTTAGTCACATTTTTGTCGCGAACTATCACGGACCCTGGTCGCGGAAG
AACTGGGGTGTGCACCAATAGAAGCCATGTGAAAGAGTACCCCATGGTGT
CATATTAAAAGCAATGTAAGAGAGTACCCCAAACCACTCAGACATGCTGC
CTCTTCTCCTTCAGTATTTAAACACTTGCCTCTGTCTCCACAGTACCTAG
CATTCCCCTGCGGGCTGATCCGTGGAGCCCTGGCTAACCTGGGCATCAGC
TGTATCGTCACTGCCGAGGTCCAGAACATGCCGGCATGTAAGTCAGCCTC
ATCATGCAGGCTACTCCTCTTTGACTGGGAACATGGTCTTCTAAGTTGTT
CAATGATAATAATTTGTCAATGTAGTGTGCAATGGTCTAATGGGTAGAAT
GTTCGCCTTACACACGGTAGGTCATGAGTTTGATCCCCAGCTGGGTCATA
CCAAGGACTTTGAAAATGGTACATACTGCTTTCTCTGCTTTATAGCACTC
AGCATTTGGGAAACTTGCTGTAGAGACTTGTACAAAGTTGTGTGACCCAA
GAGCCCATTTAATCGAAGATGGGCGCCACCATATGCTCCACCAAGTGGCA
CAGAAGGACTTCAACTTTTAACAATGTGGCTTAGACATCCAGGTAGAACA
TCACATAATACCAAGGAGGTTTGAAATCAAACTCAAGCAACTGGATAAGA
TTCTGTAAAGAGTAACTCAGTAAGATGTTTCAGACAGCATCCGCTTTCAT
CAGTGATTGAGAAAGATGAATGATCTCAGTCACTGATGAAGGATAGTAGA
TGCCGTCTAAAACATTTGACTCTTTACTTTAGAGAATTTATCCAGTTGCT
TGAATTATTATAATTGTATTATGCAAAAGTAATGTTTGTACATAGTTCAT
CTTCGCTATTTTTGATTATCCACATCTAAGACAAAGCAACTTGTCCTCAC
TACTTTTTGTTTCCCACACAGGTAAATTCCAGATCATGATCCAGAGATCG
CAATAA

Coding sequence (CDS) from alignment at Sc0000398:62386..67491-

>transcript:BL96073_evm3 ID=transcript:BL96073_evm3|Name=transcript:BL96073_evm3|organism=Branchiostoma lanceolatum|type=CDS|length=432bp|location=Sequence derived from alignment at Sc0000398:62386..67491- (Branchiostoma lanceolatum)
ATGGAAGTTGTTTCTTACCTTTTCAAGACGGCAGACGAGGAAAAATGCAT
TCCCATCCTGGAGAACATGGGTTACCGTGTGGGACACAGTCTAGCAGAAA
GATTTACCAAGGACAGCTCACGGTTTAAGGATGAGCTGGACATCATGAAG
TTCATCTGTAAGGATTTCTGGACGAGCGTTTATAAGAAACAAGTGGACAA
CCTGAGAACCAACCATCAGGGTGTGTACGTTCTACAGGACAACAGATGTA
GAGTTCTCACTCAGATCTCAGCCAGTAAACAGTATCTGGAGGCTGCACCG
AATTACCTAGCATTCCCCTGCGGGCTGATCCGTGGAGCCCTGGCTAACCT
GGGCATCAGCTGTATCGTCACTGCCGAGGTCCAGAACATGCCGGCATGTA
AATTCCAGATCATGATCCAGAGATCGCAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96073gene:BL96073Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96073_evm3transcript:BL96073_evm3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96073_evm3-E1BL96073_evm3-E1-1564476830-456736Branchiostoma lanceolatumexon
BL96073_evm3-E2BL96073_evm3-E2-1564476830-456734Branchiostoma lanceolatumexon
BL96073_evm3-E3BL96073_evm3-E3-1564476830-456732Branchiostoma lanceolatumexon
BL96073_evm3-E4BL96073_evm3-E4-1564476830-456730Branchiostoma lanceolatumexon
BL96073_evm3-E5BL96073_evm3-E5-1564476830-456728Branchiostoma lanceolatumexon
BL96073_evm3-E6BL96073_evm3-E6-1564476830-456726Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000398genomeSc0000398:62386..67491 -
Properties
Property NameValue
Transcript idBL96073_evm3
Biotypeprotein_coding