transcript:BL96079_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96079_evm0
Unique Nametranscript:BL96079_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96079_evm0

>transcript:BL96079_evm0-protein ID=transcript:BL96079_evm0-protein|Name=transcript:BL96079_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=151bp
MPRVRHAGSPARGAGPGRAGTPGRGQGTPAGGRGPTAGQAGAPSPRKRRR
FRPGTRALMEIRKYQKSTALLLRKLPFSRVVREVCQEVGGADFRWQAYAI
MALQEAAEAFLVGLMEDANLIALHAKRVTLMPRDIQLARRIRGPEKGFAS
L
Run BLAST on NCBI

mRNA from alignment at Sc0000404:128613..132725-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96079_evm0 ID=transcript:BL96079_evm0|Name=transcript:BL96079_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=4113bp|location=Sequence derived from alignment at Sc0000404:128613..132725- (Branchiostoma lanceolatum)
ATGCCAAGGGTACGGCACGCGGGAAGTCCGGCCAGGGGAGCGGGGCCAGG ACGGGCCGGGACGCCGGGCAGAGGACAGGGAACTCCCGCCGGTGGGCGCG GGCCGACTGCGGGACAGGCAGGGGCCCCTAGCCCAAGAAGTGAGTTGAAA AATCCAATATCATGATCACTGAAGCCATAGAATTCAGACTGATCAGTGTT GGATAGTTATCGTTTCTTTGTGCTTTTGTAAAAAAAAAAATATTTTGTTG TTGTTCGTGTTTTATGTTTTTAATGTCTAACGCCGCTAGACATGGGCGCA AGATGCCTCTTGTACAAATGTACTAGCTAGTCTTGGGTGTTAATGTTATC CTGAGTAAATTTTGTTGTTTTACTGCGAAGCAAGAAAGAAGAAGAAGTAA TCTCATAATTTTTTTGTTGCTGTCCTTGGTTAACCAAGCAGGTTAACCTC CTTGGTTTAACGTCTATTATATCGCTAGACGTGGTCTAATTTGCAAATAT GGTAATCTTTACAATCACAGAGAGGAGGAGATTTCGCCCTGGGACAAGAG CACTGATGGAGATCCGGAAATATCAGAAATCCACAGCACTTCTTCTCAGG AAGTTGCCTTTTTCAAGAGTGGTAAGAAGAAAAATATATAACGTTATATA CAAGATAGTATTCTTCATCACAACTAGATGATATTACTGTTAGTCCTAAC AGTAATAATTAAGGGTTAATGACCCGCCCCGAGGTGTATATGGTGTCATA ACGCCTGGCCATGTGCTATAACCACCGAATAAAACCACCGAGTGAGCGAA GTGAACGAGGTGGTTTTATGAGGTGGTTATAGCACATGACCAGGCGTTAT GACACCATATACACCGAGGAAGAGGCGGGTCATTAACGTTATTATCATAT AGCTTATCCAAACTGACGCATATAAGAGTAGACAATTTCTGTTTGACGCA TAGATCCCTTATACTATTAAGAATGCATTTCAGAATTCACATTTGTCCTT TTTTAACAGAAGATGATGAAGAGTATGTACAACTGTTGCCTGATTTATTT ATTTCAACCACACAGGATAGGAGGGTCGGTTTCAGGTCAGTCAGAAAATG TTATGATTGTATATATTGAAGAATCTCCCTGCAACAAGACCTCAGGTAAC CTGAATAGAACACAGGTTCTTTGGCCAGCAGGAAATGGAACGCGCGGAAC CTTAGATAGAACATGGTTTCTTTGGCCAACAGCAAATGGAACACGCGGAA CATTTTTGGGAATTTTAAATTTGTTTTCCCTTTTTCATGTATTCTAAGGA AATTTTTAGGAATTCTAAGACAATGAAGATTCTTTTAAACAAGGTTAAGA AAAAGATTCATCAAATAGATACCCCCTCTACAAAATGCAATGGTTATAAA GATTTTTTAAACAAGGTTAAGAAAAAGATTCACCAAAAAGATACCCCCTC AACAAAATGGAACGGTTGTGTTCTGACATGACGTCAAGAAGTGGTGTGTT ATGGCGTGATAGCAGACCACTTATTGTGGGCAATGGAGGCTTCTGATTGG TCGACGCCATCTACCTATGTGATAATAATAGATAATATACTAAAACCAAA CTTTAAAAAAGACTTTATCAGTATTCGAAAAAGAGTAGGGGCATGCCCCG GTGTGCGATGGTCCAAAGTTCTCCAAACCCTTCTGTCTGGAGTTGGTGAT TCACTACAAATCACCCTGATGGAGGCCTGGCAAACCTCCGTCTCATATCA GCCATACGGTGATTTACACCATTCACCCAGATGGGCTCCCTTGGAAATCA GTTACATAGTTAACTGAAGGGACCACCCTAAAGATTAATGATAATAATAA TAATTATTATTATGCTGCTGCAATTTGTTGTAAAACTAGATCCCACATGA AATTATATTGAAATTGACTCAGTTTCTTTGTCAGTGATAATTGACCGTAC TAACACAATTGCAAGATAGAAAAATTGTCTTTGCAATAGGATGAGTTTGT AATGAGAGGTCACTGAAAATAGCAAACATAAAACCGAACCAAATATCTTA TTTTCATGATTTCCCCAAACTTCACTTCTTCTCCCTTCCCACTCCAGGTG CGCGAGGTTTGTCAGGAGGTTGGAGGAGCGGACTTCAGATGGCAGGCCTA CGCCATCATGGCTCTACAAGAGGTAATGTTAGCTTAGTCTGTATAACGCA AACTCCAGCTGTCCGGGGGTTTCTCTCCCCTCCTTGGGTTGTGAGGCGGT TACAGGGCGGCGAGCGGTCACAGGAGGCTTGATTGAATTCAAGCTAATGT TAGCTTATCTTCAACATACTCAGTACCTAGCTTTCTGTCACAAGCTTTGG GGTAAGTAAGGTAAAATGGCTGATTCTGTTGGCAGAATTTTAAAGTAGCA AGTCAATTCTTTACATCTTCGGTATACATTGTACATAAAATCTAAGCCTA AACGCATAGAGTCCATATGCATCCTATTCTAGCTCCAGTTTGCTCCTCTG ATAGCTTTCCCACAGAATTCTGTCTCCTGCCTGATTTTATTATTCTCTAA GCAGAGGTTTCGGTCGAGTAGGGTAGGAGTTTCCTTGAAGGCAGAGGGAC GTTAAAAATCCTGGACACTCCTACCCTCCTCGGCCGAAACCTCTGCTTGG AGAATATGATTTCATAGCCTGCTATACCTCTAGATCATGCCTCTGGTCTC TTCTCCACAGAATAGTTTGGCCGCCAACACATGACAAGAGTAGTACATGT ACTAGTACTCTAGTACATGTAGTATCCATTACACAATGCTGATGGGGTCC CTGACACATGCAGGGGTGGGAAGCAGTCCGCTAGTCTTCACACACTGCCT ATAAGTTGCTCTGTCCAGGGGGTTTACGCTCATTAGGCCGCACATCTTAT GTTGACTAGCATTCTGTACGGAACTGATCAGAGGAGCAGACTAATGTTCT CCCAGCAGATGTTGGGTAGAAAGTTTTCTAATCGGCTGGTTTTCCTGACA GTACTCAACCCTAGCCTGAATTCAATCAAGCCTCCTGTGACCGCTCGCCG TCCTGTAATCGGCTCCCAACCCAAGAGCTTGATGGCTTGGGCTGCTAATT CAAGGGAATCCTCCTTTCTAAATATGGATAATCTAAGCAGCTGTCATCAG CCCACAGAGCTGCCTGCCCAGGCCAGACTCTAGTTGCTAAGGATCTATTG CTGTTGCTATCCAGTGATTGACAGCTGCAGATGCCTGATCTGCAGGTGGT AGGAAGAGAGTTTCACAGGCCGTTTCTCTGTACTTTGAACATTTTTCGGC AGTCAAGTCTTTTCTTGTTGGATTTTCAAACTTGGTTTTTGATGTGGGAG AAACTGACATTGTCTGCCTCTAAAGGAACAGATAAACTAAAGGAGGTTTA AAATCCCTTTTAACAGGCTTGGATACATCTCATTTCTCACCCTCCCAATA TCTGGATCTCATTTCCCATCCCTTCCTCCCCATCTACCTGTGGTGCCAGT GGTGCCAGCTAACAGACATGCTAACTAGCTGGCAATGGGGACCTGGCTGA AATCATGGCCTCTGATTGGTGTTATTATTTTTGATAACAGCTCTCCTGGC TTAGAGCTAGTCGAGCACAAACTCCGCGGGGAGGGGAGAGAAACCCCCGG ACAGCTGGAGTTTGCGTTATACAGACTATACTCAACCCCAGCCGATCAGA AAACGTGACCATTTTCTACCCCAACATCTGCTTGGAGATTATATGCCAGA GCTAAAATAGGATAGATTTCAGGCTACTTTTACAGCTTTTGTTGTAAATT GTAATGCTGTAGGGCTGTTAGGATTAGGATTTTACCATGGTCAATACTGA CCGACGGAGGCCATATGTAATTGGTAGACGATCTACGGCACGGCAGTACA GTATTTCCACCTAACAGTGGCCTAAGAGAAAATGACTAATGAGGCCGGAT GTCTTTTGATTTTCTTCTCCAGGCAGCAGAAGCATTCCTGGTTGGGTTGA TGGAGGATGCTAACCTGATCGCACTTCACGCCAAGAGAGTCACCCTCATG CCCAGGGACATCCAATTGGCCAGGAGGATTCGGGGGCCGGAGAAGGGCTT TGCTAGTTTGTAA

Coding sequence (CDS) from alignment at Sc0000404:128613..132725-

>transcript:BL96079_evm0 ID=transcript:BL96079_evm0|Name=transcript:BL96079_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=456bp|location=Sequence derived from alignment at Sc0000404:128613..132725- (Branchiostoma lanceolatum)
ATGCCAAGGGTACGGCACGCGGGAAGTCCGGCCAGGGGAGCGGGGCCAGG
ACGGGCCGGGACGCCGGGCAGAGGACAGGGAACTCCCGCCGGTGGGCGCG
GGCCGACTGCGGGACAGGCAGGGGCCCCTAGCCCAAGAAAGAGGAGGAGA
TTTCGCCCTGGGACAAGAGCACTGATGGAGATCCGGAAATATCAGAAATC
CACAGCACTTCTTCTCAGGAAGTTGCCTTTTTCAAGAGTGGTGCGCGAGG
TTTGTCAGGAGGTTGGAGGAGCGGACTTCAGATGGCAGGCCTACGCCATC
ATGGCTCTACAAGAGGCAGCAGAAGCATTCCTGGTTGGGTTGATGGAGGA
TGCTAACCTGATCGCACTTCACGCCAAGAGAGTCACCCTCATGCCCAGGG
ACATCCAATTGGCCAGGAGGATTCGGGGGCCGGAGAAGGGCTTTGCTAGT
TTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96079gene:BL96079Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96079_evm0-E1BL96079_evm0-E1-1564476830-458276Branchiostoma lanceolatumexon
BL96079_evm0-E2BL96079_evm0-E2-1564476830-458274Branchiostoma lanceolatumexon
BL96079_evm0-E3BL96079_evm0-E3-1564476830-458272Branchiostoma lanceolatumexon
BL96079_evm0-E4BL96079_evm0-E4-1564476830-458270Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96079_evm0transcript:BL96079_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000404genomeSc0000404:128613..132725 -
Properties
Property NameValue
Transcript idBL96079_evm0
Biotypeprotein_coding