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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96081_evm0 >transcript:BL96081_evm0-protein ID=transcript:BL96081_evm0-protein|Name=transcript:BL96081_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=529bp
MCVLRKTGSQVCDFTDQVNRSTDPSLSNYIYVFILAQLFLCACAGSIYTL
GVAYLDESVEVQYSGQYIGVEEFAFLLLFNPLLYAMTAVGPGLGTVVCEG
ILNLWVDWPNKTGGTLKPNDSNWLGNWWLGFPIIGCLGIVSALPLFGYPR
KLPARDFELSVTETAEDDVIRIHEYDGDLQTESESKDVATRLKIGLRKLQ
MALGVLFKNPTYMFLIFAGAIDTLGYSGIFTFSPKLSELMLDANTVRTSW
YFGLAIVVGDASGALFGGWITKFFGVNCKKMLAVVVALSLLSQLGNLIFL
MYCEDAPRVMLAQADSMNCTFGCLCDATLYDPVCGSNGVEYFSACHAGCT
QYSASNLTYSSCGCITEYWVSKNVTSGFTSSAQTGTCSRNCFPWVMPLYF
TIVTLLGFVALATIPIYIQVTLRIVPGQLRSFALGIQLAITKLLGLIPGS
LIFGQVIDLSCIHWEDKCGTRGSCLTYDNRKVGLNVFAVAAVVGAVAMFL
YFMAYWTYKNPKDVRDRDEKDAGNGNFTK Run BLAST on NCBI mRNA from alignment at Sc0000406:1138..8922+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96081_evm0 ID=transcript:BL96081_evm0|Name=transcript:BL96081_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=7785bp|location=Sequence derived from alignment at Sc0000406:1138..8922+ (Branchiostoma lanceolatum)
ATGTGTGTACTTCGTAAGACCGGGTCGCAAGTGTGTGACTTTACAGATCA
GGTGAGCAGAAATAAGCGTGAACTTCGTATATCGTGTTTCTTTTTGAGCT
CCAGTGCAGTTTTATATAAATTACCCCCAAGATATGACGAGTGCCCGCCA
GGAGTCTGCCTGATGGCCGACCGTCGTTCGCGGGGCATTCGGCAGGGACC
CTACAACTGCCCCACCTGGATGTGATAAGCACGCGGTACCCTGTCGGACC
CTACAGGGGTCACTACAAGACACCGTCAGAGCAACTGACGGGTACCTGCC
GGAGACCGACAATAAAGATTTTACAAAAATGCCACCGAGTACCTGGCGGA
GCACCCCGAGACCCCTGCAGGGCAGCGTGAAGGAAACTTTTAATTGTGAC
CACGACAGCCGGCGCCCCCCAGACGTCAGAGCCCGGCCGGGGCTACATCC
CCGACGGGCACCGGCGCAATTGTGACCTAAGCATAAGCTAGGGTCACATT
AAACTCACGTCGTACCTACGATGGGTTTTTTTTCGTCATGGCAGCGCCGT
ACGTTGTACGTTTGGGGAAAACCGGATGCAATAGTTAAGATATATAAAGT
CGTGGTCACATAAAACGTAGGTACATCGTACGATGTTTTTTTTTTAGTGT
ACCTAGGTCAATCGCAGGTAAATTGCGCGTAATATTAGCCATCACCGAGC
GTCCTACGTCAAAAAATACAGCTAAAATGATTTTGAACATGTTCAAAATT
TCATCCATCGTCGTATGAATTTTTGCAGCCCACAAGTCAGGCTTTTGCCA
CGGCCCTTTTTTCTAATGATGAGTGACAAATTCATAGAGTTCAACCGTAT
TCTGACGGCTTAAGTTTTCCCTGATATTGCCAATGTTGATGCAAAGTGTA
ACCACCAGAACACGGTAGCAACCTGAAAACAACGAGCCCGTGGAAGAGCC
TACTTCCAATAACCCACATATCATTACAATCCACCTACATGTTCTACAGT
TATGCTGCCTTTAAGCATCCGGTGACACATACACACACAATCTGTCCACA
AACACGCAAACACACACGCAAACATACTCAAAACAATATCCCCATGAAAA
AGTCTTACTCACATTAACAGCATGCTTATTTGTCAGGTCTACACAACATA
CATTATTCATCCATTCATAATTTGTTTGTTTGTTTGTTTGTTTGTTTGTT
TGTTTGTTTGTTTGTTTGTTTGTTTTATTCAGCACTGACCCAAGCCTGTC
CAACTACATCTACGTGTTCATCTTGGCACAGCTGTTCCTGTGCGCGTGCG
CAGGCTCCATTTACACACTGGGCGTGGCCTACCTGGACGAGAGTGTGGAG
GTTCAGTACTCAGGACAGTACATCGGTGTGGAGGAGTTTGCCTTTTTATT
GCTGTTTAACCGTAAAGCCCATGTGACATGTTTCCTATGTTTTATAACAC
GATCTGCTACGACGTTAGAATCTAGTTGTGCAGTAACGAACACTACAGAA
GGATCTTGCCGACCGAATTGAAAAACAAGGAACAAAAGTTTAAAATCATA
GCCAAATCCTATTAATCCATCGAATACATACAAAACATGTTACCTATGTT
TTAGACAATGTGCTATATGACGTTAAGAATCTAGAACAATCATGAATATC
TTTCGTGTAAAGTCAGTTGTGCAGTCATGAACACTTCAGTAGGGTCTTGC
ACACCGAATTGAAAAGTAACGAACAAAGGTTCGAAACTCTTGTAAAATCA
TACCCAATTCTATCAATCAACCATACAAAACATGTCGCCTATGTTTTAGA
CGGTCTGTCACGACGTTAAAATCTATAAATTATGGCTATCTTAGATTTTA
AGTCAGTTGTACACTCATGAACACTTCAGACCGAATGGAAAAACGGTGAA
ACCGGAGACTGGCAGCATTGGAAGGTAGGCTTAGCCCGGGCCCAAATTTT
GCCCCGGAGGATGGTAAGAGGGGACAGTTGGCTTGGGCCGAGCCCAAAGT
TGCCCCCCCCCTAGGTTGGAAGAGAAATGCAGAAACAGAATTGGCGAGAA
AATCACAATAATGAAATAAAGCACGAAGTTCACAAAAACTCCACATGCTG
CCCAGACTGGACATTGTTATTCTCTGTTGCAGCTCTCCTGTACGCCATGA
CAGCCGTGGGCCCCGGACTCGGCACTGTTGTCTGCGAGGGGATCCTTAAC
CTGTGGGTCGATTGGCCCAACAAGACCGGGTGAGTTGGTTTCAATATTCG
AGGTTTTGAAGAAAAATAACTTTTAACACCTTTTAATATTTTTATCCAAT
ATCGGTGAAGATTTCCATAGCACTCACATATATCATGATATGTAGGTCCT
ATTTTCAGTTTTCTTTCAAACAGTAATAATAATTATACGACTTTTGTAAA
GAAATTAAGGAGGGTGTGAATTGACTACGTTGTCCAGTGATGGAACAGGG
TAACTGAACATTAGATAAGACCTATCCATGACAAGTTGTGTGATGTAACT
CCAGAGGTACTCTCAAGCCAAACGACTCCAACTGGCTGGGGAACTGGTGG
CTGGGGTTCCCTATCATTGGGTGTCTGGGGATCGTGTCAGCACTGCCGCT
ATTCGGGTATCCCCGCAAGTTACCAGGTTTGTTTGTCAGATTGTTTGTTA
CTTTGCCCTTTCCTATTCATTGAAATGTTCAACACTTACTCCATCATATA
AGAGGCATTTCATGAAATTGTCGGCCGTCCCTATTGGCCTTTCGGAGTTT
TACTCAATTTACTTATCAACTTGAACATGTACCAAGATAAAGGCGCTCGT
CATATAAATGAAGCTTGTATGTTGTTTTATTGTTCAGTTTACTGATTTTC
AAGGCATAATCGGTTGCATCCTCTCAATGTGCAGACATGTAAAAACGGCT
TGTTTGATTACCGAGGGAGAGAAAAACTTAGAACTTTGGGATTTTGTTTG
GAAAGTGAAATAGTGTCAATATCTTCTTTCTTCAATGTGGGCGAAACTTT
GAATGCTAATCCTTTGGGTGAAATCGTACTGTCTTAACAAAACGTTCGTT
TCCGTTGCTAACATTTTCACAGCACGGGACTTTGAGCTCAGTGTCACGGA
AACAGCCGAAGATGACGTCATTCGAATACACGAGTATGACGGAGATTTGC
AGACCGAAAGCGAGTCGAAGGATGTCGCCACACGTCTGAAAATCGGTCTG
AGGAAGTTACAGATGGCGTTAGGAGTGCTCTTCAAGAATCCAACTTACAT
GTTCCTCATCTTTGCTGGTAAAACTTCTTATCCGTTTATCATCAGTTTTG
ACTTTTAATAGAAGAGAAAGGTTGATAACATGGTTGGATGGAAATTATTA
TCGTAGTGGACTAATGGTGTTGCGCCCCGTTCACACTGGGCTTCGCGTAT
CTGGATACAAAATGTACATTTGGATTCGGGGTAGATCCGGATATATCCAG
TTGCGTTCATACCAGGGTTAGTCGAATCCGGATCTGCCTAATCCTGTCCA
ACATCAGATCCGGATCTAAAGTCAGACAAGTCAAAGGGTAGAATTGGTTA
GAGTAGAGAAGAGAGAATGAATGAATGAGAATGAATGGTTTTTATTTGAT
CATTGTGATCGCAAATGGGAAGTACCTCGCAGCCATAGGCTGAATTGCGT
ACTTTTCACATTGTTTTTAAAAACTAGAGACATTAGGCAATCTATATCGA
TTACAATATAATATCCCATATATACTCTATAAGTAGAGTAGAGTAGACGA
GTAGAGTAGATTTAAAGGATTAAAAGGATTTTTTTTTAAATATTGCGCAC
AAACGACGTCCCCTTCCACCACAGGAGCCATAGATACCTTAGGGTACAGC
GGCATTTTCACCTTCTCTCCCAAACTGTCCGAGTTGATGCTGGATGCGAA
CACGGTGAGGACGTCATGGTACTTCGGTAAGCCATTTCGTATTCCTTCTT
TCCCAAAGAATTTGTAACATATTTGGGCTAACTTTACCTTGCATCGTCAT
CAATAATATAAAGTCACTCTGACACAGCTGGCTTGTTAACAGAAATGTAC
TCAGGATTTTCCTAGTATTCCAGAATAAGTATAAGTACGCCGTCTCCTTC
GAGAACCTCGCCCACACAGTCGTATACAATATACCTTGTGGAGGCTCTGC
TAGACTGGGCTGAGGTTTCCACTATCATGTGCGCTGAAGTTTCCACTATT
CCACTATAAACCAGCTGTCAGCCAATGAGAGAATCGGATTTACTAAAGAA
AACATTTAGGCGATTCTCTGATTGACTGACAGCTGGCTAGGGGCCACGCC
CACAAAAGTGGAAACTGGAAACCTCAGCCTGGTTTAGCTGAGCCTCCCTA
TGGTATATTTCTTCATCGCACGCTCAAGAGATAAGGCGCCACAACTGTTT
TGATGTCCTTATCAAGTAAAGATAGTAAAGATTGCAACACTTCGGTATTT
GCCTGGGTACTTCGAATGATAGCCGTTATGTCTTCCCAATGCAGGTCTCG
CCATTGTTGTTGGAGACGCCAGCGGAGCCCTGTTTGGTGGCTGGATAACG
AAGTTTTTCGGAGTGAACTGTAAGAAGATGTTGGCTGTGGTGGTGGCCCT
GTCTCTCCTCTCGCAGCTCGGCAACCTGATTTTCCTCATGTACTGTGAGG
ACGCACCGAGAGTGATGCTCGCACAGGCCGACAGGTACGGATGTATTCTT
ACCATAGCTCCGTATATTGTAGCATAGATCATCAATGGATAGATTTAGAG
AATATCTCTCTTGAGTGGTGCATATATAAAATCTGATTGATTAAATATTC
TGATGATACTATTACATACTATAGTAGTAAGTTTGTTTGGAGGACAAATG
ATGTAACTGATCTATGACATATTTATCATTTGTAGGAAATGCATCTGCAA
ATGCATGATTTGTTGGAAATGTGGTCATCGTATAGAATACCTGAAACAGA
TCTATCATACTTTTATAAACTAATCTTCGTTGACCTACCCCCTTGCTGAA
GTTATTCATGGAAAATGAAATTTTGTTACACGAACCGTCGATAAGACCAA
ACATCCATATCCATCTTTACACACGTTATCATCTTGCCTAAGCTGTTGAC
AGGATGATCCTGTCAACAGTAAAAAAAATACACTGCTGTCAGGATAGCAA
TAGAAAAAATGGCACTGCTGACAGGATGCAGAGTTTTCCACTGCTGACGG
GATCATCCTGTCAGTAGCCACCTGTTGCGATGATGTCATAAACGTCTGTT
CACTCTGTTGTGATCCTCAGCATGAACTGCACGTTTGGCTGCCTGTGTGA
CGCCACCCTGTACGACCCGGTTTGCGGCAGCAATGGTGTGGAGTATTTCT
CCGCATGTCACGCTGGATGTACCCAGTACAGCGCCTCAAATCTGGTAGGT
ACAGGATAAAACATGAGTTCGGAGGTTTCATACCTTTGTGAATTATTTAC
AGTTTTTCGTATGTCTTGTTTGATTATAGTTCATCGATTGTGCAAGTAAC
ATTGCATGCGTCCATTGGTCACTTGCAGGAAATACCCTTTGACCTCCAAG
TCGACCTTTACATCCTGCCAGTCTCTGGTGACACGATCTCCCCCTTCACA
TCCTGTCACTCTGTTGTACCACATTTGCATAATCTATACATGGTGGTGTT
TGCAATTGATTAACATGTCATAAGTATGAAATTCCCTTCATTTGTCACTA
AGCAATAATACTGCATTTCCACATCAATCATGTAACTAGTGAGGTCCTTG
ATTACTATCTATCAATGCTCAGCTCATCCTGAATTCCATATGTCACATGT
ATTAACTTCCTATCATTGAAAGCACTGGAATCAGAAAACTTGCACACTGA
TTATGGAAATAACGTTCAAATTTGCAATTTCCATGTAATCTTATCTACAT
CTCTGTCTAAACTAAGTAATACCCAATATGACAAACACCTCGAGTTATGA
ACTTCAAACGTTTTCACCAAAGCGTCCATGCAGTCCCATACAAGTTGCTA
AGGCCCCTAGACCTGCACCACTTCTTTCCGGCTTCAAACGCTATCTGCCA
TCCAAACATCAAGACCACAGCATCATGTACAGAACAGAACATTTAAAAAA
AGGGAAATCTGCTGCAGTACCAAGGAAAACCGCTACAATGACCTTTATCT
TTTCAAGACCATATACCAAATATCACAATCCAGCCATAGGTTTAAAACGG
GCGATGTCGTGTCTCTATCCTTAGACTTCAGGGTAAGTTAGGTCGAGTCA
AAAGCATGAATCAAGTCAATACGTCGCGTACATTGTTACTGGCCAATTTT
ATAAGCGTCAACTTTCCACATACCCCGTCATCAAACCTGACATTACAATT
CCTTCCTCAGACCTACTCCAGCTGTGGCTGTATCACTGAGTATTGGGTGA
GCAAAAACGTCACTTCCGGTTTCACGTCATCTGCCCAGACGGGCACCTGT
TCACGCAACTGCTTCCCCTGGGTCATGCCCCTGTACTTCACCATCGTCAC
CCTCCTGGGCTTCGTCGCCTTGGCAACCATCCCTATATACATCCAAGTGA
CCTTGAGGTACGGAATTACTTTCATTCAAGGGTCAGACGAATGTGAAGCC
CGTAAACTATTTTTCCTCGTCTTTTCTACTTTCAGTGTACAAAAATGCAG
CACTCCAGATTGTAACGTTGGCTCAATATCTGAGAAGACCCATACCTTAA
GCACGTGAAATAACTCATCAAACTCTTTGTAATTGCAAGAAAAGAAAGTT
GGACTTTATTTCTGTCTTTTGGTGTTTGTAATCATGACAAAAATATTTGT
ATCCTTGTCATATCTGTAGAATTGTTCCTGGTCAATTAAGATCCTTCGCA
CTTGGAATTCAATTGGCAATCACTAAACTACTCGGTAAGTAAATTCTCAG
TATTTAGAATATCTGTTTATTTGATATAGACCTAATCTATTCAGTGTCAA
GCATTTCAAACATGCGAGAGATGACACCCTTGGAATGTTTAAAACTTGAC
AACATGGTATAAGAACTTTGCCATCTGTTGCATACATATGTGTTAATGCA
GAATCTAATGATATGAAGTAATTCAAAACCATGTAACTNTCACTAAGCTA
TTCGGTAAGTAAATTCTCAGTATTTAGAATATCTGTTTATTTGATATAGA
CCTTATCATTCAGTGTCAAGCATTTCAAACATGCGAGAGATGACACCCTT
GGAATGTTTAAAACTTGACAACATGGTATAAGAACTTTGCCATCTGTTGC
ATACATATGTGTTAATGCAGAATCTAATGATATGAAACAATTTAACACCA
TGTAACTCTTATGATATAACCACCAACAGCTGTCTTCCTGTACACCAGGT
GACAACTCTGAAGCGAGAGACAATTATCATGCTGTTATACTGAATATCTC
AATGAAGAAATCTAAAAGTCCCTGAATTTACGACTATTCTTTTACACCCT
TGTATTTCTTAATCTGTATTTTCAATATTTCTATTCAGATTACCCATTAC
TTAGTCCAATCCTTATACACAATCCCAGGTTTGATCCCGGGGTCTCTCAT
CTTCGGTCAGGTCATTGATCTGTCCTGCATTCATTGGGAGGACAAGTGTG
GAACTAGGGGGTCTTGCCTGACGTACGACAACCGTAAGGTTGGTCTGAAC
GTGTTCGCCGTAGCTGCAGTAGTCGGGGCGGTCGCCATGTTTCTCTACTT
CATGGCGTACTGGACCTACAAGAACCCCAAGGACGTAAGAGATCGAGATG
AAAAGGATGCTGGGAACGGAAACTTCACGAAATGA Coding sequence (CDS) from alignment at Sc0000406:1138..8922+ >transcript:BL96081_evm0 ID=transcript:BL96081_evm0|Name=transcript:BL96081_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=1590bp|location=Sequence derived from alignment at Sc0000406:1138..8922+ (Branchiostoma lanceolatum)
ATGTGTGTACTTCGTAAGACCGGGTCGCAAGTGTGTGACTTTACAGATCA
GGTCAATCGCAGCACTGACCCAAGCCTGTCCAACTACATCTACGTGTTCA
TCTTGGCACAGCTGTTCCTGTGCGCGTGCGCAGGCTCCATTTACACACTG
GGCGTGGCCTACCTGGACGAGAGTGTGGAGGTTCAGTACTCAGGACAGTA
CATCGGTGTGGAGGAGTTTGCCTTTTTATTGCTGTTTAACCCTCTCCTGT
ACGCCATGACAGCCGTGGGCCCCGGACTCGGCACTGTTGTCTGCGAGGGG
ATCCTTAACCTGTGGGTCGATTGGCCCAACAAGACCGGAGGTACTCTCAA
GCCAAACGACTCCAACTGGCTGGGGAACTGGTGGCTGGGGTTCCCTATCA
TTGGGTGTCTGGGGATCGTGTCAGCACTGCCGCTATTCGGGTATCCCCGC
AAGTTACCAGCACGGGACTTTGAGCTCAGTGTCACGGAAACAGCCGAAGA
TGACGTCATTCGAATACACGAGTATGACGGAGATTTGCAGACCGAAAGCG
AGTCGAAGGATGTCGCCACACGTCTGAAAATCGGTCTGAGGAAGTTACAG
ATGGCGTTAGGAGTGCTCTTCAAGAATCCAACTTACATGTTCCTCATCTT
TGCTGGAGCCATAGATACCTTAGGGTACAGCGGCATTTTCACCTTCTCTC
CCAAACTGTCCGAGTTGATGCTGGATGCGAACACGGTGAGGACGTCATGG
TACTTCGGTCTCGCCATTGTTGTTGGAGACGCCAGCGGAGCCCTGTTTGG
TGGCTGGATAACGAAGTTTTTCGGAGTGAACTGTAAGAAGATGTTGGCTG
TGGTGGTGGCCCTGTCTCTCCTCTCGCAGCTCGGCAACCTGATTTTCCTC
ATGTACTGTGAGGACGCACCGAGAGTGATGCTCGCACAGGCCGACAGCAT
GAACTGCACGTTTGGCTGCCTGTGTGACGCCACCCTGTACGACCCGGTTT
GCGGCAGCAATGGTGTGGAGTATTTCTCCGCATGTCACGCTGGATGTACC
CAGTACAGCGCCTCAAATCTGACCTACTCCAGCTGTGGCTGTATCACTGA
GTATTGGGTGAGCAAAAACGTCACTTCCGGTTTCACGTCATCTGCCCAGA
CGGGCACCTGTTCACGCAACTGCTTCCCCTGGGTCATGCCCCTGTACTTC
ACCATCGTCACCCTCCTGGGCTTCGTCGCCTTGGCAACCATCCCTATATA
CATCCAAGTGACCTTGAGAATTGTTCCTGGTCAATTAAGATCCTTCGCAC
TTGGAATTCAATTGGCAATCACTAAACTACTCGGTTTGATCCCGGGGTCT
CTCATCTTCGGTCAGGTCATTGATCTGTCCTGCATTCATTGGGAGGACAA
GTGTGGAACTAGGGGGTCTTGCCTGACGTACGACAACCGTAAGGTTGGTC
TGAACGTGTTCGCCGTAGCTGCAGTAGTCGGGGCGGTCGCCATGTTTCTC
TACTTCATGGCGTACTGGACCTACAAGAACCCCAAGGACGTAAGAGATCG
AGATGAAAAGGATGCTGGGAACGGAAACTTCACGAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000406 | genome | Sc0000406:1138..8922 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96081_evm0 |
| Biotype | protein_coding |
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