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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96084_evm1 >transcript:BL96084_evm1-protein ID=transcript:BL96084_evm1-protein|Name=transcript:BL96084_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=500bp
MEFVDLTTGLVLVCSFLLSLFCLRTWAGHRGRPVKFPPSPPGLPFLGNLL
SLTREPHLQLTAWRRQYGDVFSLRMGPQDVVVVNGCAAIKEALVMKGAHF
SDRPALFLTVEAASLSKGIIMRRYGDDWKRFRRFGLSSLRHFGMGKKTLE
PSIQQECRRLCQSFKDMDGQPFDPSRFLQIAVGNVIAAIALGRRFEPDDH
DFHEELKRVDVGFKLFLQAQILNFYPTLRYVPGVRGLLNKWREVYFDSKR
WFQKIIDDHKETFDPSEIRDITDMCLLELHQGKGGKSFLKEENTWHILGD
FLAAGTETTATTLSWPLLYLALNPAWQRKVQEELDTVVGSDEIPPYSRRE
ELPFTEATILESQRIRTTVPLSVPHCTSSPTSLQGYDIPAHTQVWVNLWS
VHMDPAYWSHPDTFDPSRFLDDNGRVKVPEAFMPFSTGRRICLGEQLAKM
ELFLFLTSLLQQFTFKLPEGAPEPDLSGDIGITLLPKPFKLQAISRKSSM Run BLAST on NCBI mRNA from alignment at Sc0000407:8721..15530- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96084_evm1 ID=transcript:BL96084_evm1|Name=transcript:BL96084_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=6810bp|location=Sequence derived from alignment at Sc0000407:8721..15530- (Branchiostoma lanceolatum)
ATGGAGTTTGTCGACCTGACCACGGGTCTTGTCTTGGTCTGTTCGTTCCT
TCTGTCGCTCTTCTGTCTCCGGACATGGGCGGGACACCGCGGCCGTCCCG
TCAAGTTCCCCCCCAGCCCCCCTGGGCTGCCGTTCTTGGGGAACCTGCTG
TCCCTGACCCGGGAGCCCCACCTGCAGCTGACGGCGTGGCGCCGCCAGTA
CGGAGACGTGTTCAGTCTGCGGATGGGTCCTCAGGACGTGGTGGTTGTGA
ACGGGTGTGCCGCCATCAAGGAGGCCCTGGTCATGAAGGGCGCGCACTTC
TCGGACAGACCCGCGCTGTTCCTCACGGTTGAAGCTGCTTCACTCAGCAA
AGGTACGTATTCTGGTCTTGGCTTTTCGGTCTTCTGCCGCGGCCCAATGC
CCGCCCAAACATAACCGCGATGACAGCATTTTCCTAGTCTCCAAGCAGAT
CTACGGGAGACCCACCCATAGATCCGCTTGGAGATTAGAATTTACCCCAA
ACGGAGTCAGTTGTTGCTGAAGGTATAGAGAGATTCTATACGATGTGCAT
AATCCTATCTGCTGAATACTTGTTAGTTATCGAGTTTTGAGTAAGAATAT
ATTCGTACGGCGCCTTATGTAGCATATACACGGCACAAAAGAAAAATGAT
TCTACAATCAAAGAGGAATGAAACGGTTTCCGTCTTTTGCAGTTGTGTGT
ATCATGACTTCTTGTTTTACAGGAATCATCATGCGAAGGTATGGCGATGA
CTGGAAACGTTTCCGACGGTTCGGTCTCTCCAGTCTTCGCCACTTTGGTA
TGGGCAAGAAAACACTCGAGCCAAGCATTCAACAGGAATGCCGCCGACTT
TGCCAGTCCTTTAAAGTAAGNTTGCCAGTACTTTAAAGTAAGTCCATATC
TGAATGTGGCACGGTTGCCATAGGAACAGGCTGATCGCAACACAACAGTG
TACTCAAAATCTAACAAATTTTCTTGTCTTTTAATCGGGAATATTGCTTT
AAAACGAGAGAGACTACATGACCGTACATCTCACTGACAGGGCTCCTTTT
TTCTCTTTAGGATATGGATGGGCAGCCTTTCGATCCCAGTCGCTTCCTTC
AAATTGCCGTCGGCAATGTCATTGCTGCCATTGCACTTGGAAGACGGTTT
GAGCCGGATGATCACGATTTTCACGAAGAATTAAAGAGGGTTGATGTGGG
CTTCAAGTTGTTTCTTCAGGCCCAGATTCTGAACTTTTATCCAACTTTAA
GATATGTCCCTGGCGTTCGTGGCTTGTTAAATAAGTGGAGAGAAGTGTAT
TTCGATTCAAAACGGTGGTTTCAAAAGATTATCGATGACCACAAGGAGAC
CTTCGACCCTTCCGAGATCCGCGACATAACTGACATGTGCCTGCTGGAAC
TGCACCAAGGCAAGGGAGGTAAAAGCTTCTTGAAAGAGGAAAACACATGG
CACATCTTAGGGGATTTTCTTGCGGCAGGTACAGAAACGACGGCGACGAC
TCTCTCCTGGCCACTGCTCTACCTGGCGCTCAACCCTGCGTGGCAGCGGA
AAGTCCAAGAGGAGCTAGATACCGTGGTAGGAAGTGATGAAATCCCGCCT
TACTCCAGACGTGAGGAGCTGCCCTTCACAGAAGCGACCATCCTGGAGAG
TCAGCGGATCCGCACCACGGTTCCCCTGTCCGTGCCCCACTGCACCTCGT
CCCCGACCAGCCTACAGGGGTACGACATCCCTGCACACACCCAGGTGTGG
GTTAACCTGTGGTCCGTCCACATGGACCCTGCCTACTGGTCCCACCCGGA
CACGTTCGACCCCAGCAGGTTCCTGGACGACAACGGGAGGGTCAAGGTCC
CAGAGGCCTTCATGCCGTTCTCCACAGGTATGTGTTGTCAGACAAGCAGT
AGTGAAATGGTACGCTTCAGCAAACGTGTCAATGATGTGTCGTCACAATT
ACTGTTGGTGAAAACATTCTGCAATAATAAAATACCCAAATGCTTAGAAA
GTTGGTAACGTTATATCACGTCTAATATCCCAGAAAACGATTCACAAGCA
GCTAATTCCGTAGAAGAAATTATGCAGGAGCTTAGATTTTTCCTTGTCTT
GGATCTGAAGACATATACTGTAACGTTGGCCTTCTGTATAGGTCGGACGG
GTACTGTGGGCCTTCTGTATGGGGTCTTTCTGGACTAAGAGGAAGAAAAC
TTTCATGTATTGCTACATCGTTGCAGAATCAACACAATGCTAGTCTCCCC
TTTGTAGCTGATATGTTATCACTCTTTCAAGGGAGAAGAATTTGCATCGG
CGAGCAGCTGGCCAAGATGGAGCTGTTCCTGTTCCTCGCGTCCCTACTGC
AGCAGTTCACCTTTAAACTGCCAGAGGGCGCGCCTAAACCAGATATGTCC
GGAGTGATCGGAGCCACTATCTCTCCCAGGCCGTACAAGATACAGGCGGT
TTATCGCAAGACATAGAAGCGATGACACGGATAATTAGCGTGCATCTCAG
AGGTTGATCATATGATGGATACTTTGTATACTTTATAATCATCAGTATCG
TACTTTGGATTATTCTGTTTATAGTGCTGAGTTTGAACTACATAGTATCA
AATAAGTTTTCATACGTTACGTTATGCATGATTGATTGTATATCATTACT
TTGCAACCCGCTGCATTTTTTGTAAGAGAGTATGATTAGACCTATGTTGT
TTTTTAATCTGAGAAATATTTCAGTTCTATCAATCTTTATTAAGTTATTA
TGTTATATTTCCTAGTCTTGTAATATTTTTTCGTCATTATTAACTATTGA
TTGCTTACAGGAGGAGAACTGAGCCTTGTAGGCTTTCTTCTCTCATTCTG
CACTTTGTTATTTTTTATCCATTTCCTTATTTCGCTGTAAATGTTTCTTT
TGGGCGAATAAAATGAAATAAACAAGACCACATCACGTCCAGGTCAAAAG
ATACAAAAGCGGAAGTTCTGCTGCAGTACCAAGGTCACATACCAGGGGGC
CCAAAATCGACCTTGACTTTCGGTTTCCCAACACCCGCCCACATACGGTC
ATACCAAATATCATCGAAATCCATCAAGAGGTTCTTGAGTTATGCTGACT
AGAGTAGTGCGGAAACACAAACAGACAGACAGACAGACAGACAGACAGAC
AGACAGACAGACAGACAGACAGACAGACACCCAAAACAATATTTCCATTT
TTCATGGAGATAACAAACAAACAAACACCTACGTTATTCGTAACGTCATC
TCATTGAAATGGCTGTGCGCAACAAAGACGTACGCCCTAATAAAAAGAAA
CTACCATATTCAGGGCAAGGCTGGAGGGCTATTTTCTCTACCCTATAGAT
CAAACTGTAGGGATCACATCCGGTATCCAGTCTAGATCAGGAACAGACCA
TTCAACATCACATAAAAGATCGTAGTCTATCCTACTTTTACAGATTGATA
CGATGTTGATTCTGTTTCTAAATAATTTCTTTGTGAGTGACTTGTCCTGT
CCTTGGTGCTGAATACCACTCACACGGGTTTGCGTGCTGTGCTAAAAAAG
ACGTTTTCCTCACTCTTATACTTAGAATACTAGGTACACACATGAGCAAC
ATAAATCATATTTGAAAGTAATGAATATATTAATATTGTGCAAAGTGTTT
CATCAACTTTCCATTAAAACATCAAAATCAGATTGACGAAGTCGGAATTT
TATCTAGTATTTGATAGATAACACCTTAAGTTATACTGTCTTTGCCTCTA
CTGACTTTGTTGCATAAAAGTAAAAATCACTGACATTAGTAAATGAAGTT
ACTAGTAACATGATACAGCAACACAAAGCAAAAGCTAAGTTGTGAGAAAT
CCCTCTCACGTCCGGAGACAGTCTACGAGCGACAAAGGGAACGAAAAGAT
CAAGACAAGACCCGTGGTCAGGTCGACAGACCCGATTGTCCAGCGGCACG
TTTCTTTCAGACAGCACACAGTTGTTAATTAGCCTTGAAGTTCGAACGCC
CCACCTTGCCATAGAGAAACAGAGGACAGATGTATTACGCACGTGAGCGT
GTGTGATATGATACGTCACGGCCACTTGGCTAATGGAGGGTAACGGCCAG
TAGAGTTCATCGGTCGTCCGTGACTATGGAAAGTTTGGTGTTCGACAGGC
TCTGCCGCTGTAAATTTTTGATAGACACTGCACCAAATGACTGTGACGTA
GGTGCCATTCATACTCATTTATTGTTTTTTTTTTGGCTGTTCAGCACACG
CAGTCAGGGCTGCCCAACTAGCCTGTTGATATTACCAAGGAGGTTAAATA
GAGATCTATTTAACCTCCTTGCTATTACAAAGGGCTAGCCCTGCTGATAA
AGACACATGTGTCACATGGCGCGCAAGTAAATGTCAAAGGTCATTTGTTG
TTGGACTTGGACCTGTTTTTCTCGGAGGATCGAGTCGAAGCCAGTAAAGA
AACGTAACGCGTGNGCTTTACAATGGAGTTTGTCGACCTGACCACGGGTC
TTGTCTTGGTCTGTTCGTTCCTTCTGTCGCTCCTCTGTCTCCGGACATGG
ACGGGACACCGCGGCCGTCCCGTCAAGTTTCCCCCCAGCCCCCCTGGGCT
GCCGTTCTTGGGGAACCTGCTGTCCCTGACCCGGGAGCCCCACCTGCAGC
TGACGGCGTGGCGCCGCCAGTACGGAGACGTGTTCAGTCTGCGGATGGGT
CCTCAGGACGTGGTGGTTGTGAACGGGTGTGCCGCCATCAAGGAGGCCCT
GGTCATGAAGGGCGCGCACTTCTCGGACAGACCCGCGCTGTTCCTCACGG
AAGCTGCTTCAGCCAGCAAAGGTAACCTCTTCTTCGCTTTTCTATCCTCC
TCCGCGGCTACCAATCGCAATACCTGCTCAACGCTGACCGCAATAACATG
GCACTTGAACACAATCAGTTGTTGGTGAACAAGCAGCTGAAGGAATAGCA
ATATTTCATGTTACATGATCATATCTGCTGAATACTTGTTGGTCATGGAG
TTTTGGGTGAGGACATGTTCGTAAGGCACTTTATCCTTTATGTAGTATTT
ACACACAAGAGAAAAAAGATTTCTCAAAATGAATCAAAGAGGAATGAAAA
GGTGTTTGTCTTTTATTTGAACAGCAAAAGAATGTCAGTAGTTTGTGTCA
TGGCTTCTTGTTTTACACTATAGGAATCATCATGCGAAAGTATGGCGATG
ACTGGAAGAGCTTCCGACGGTTCGGTCTCTCCAGTCTTCGCCACTTTGGT
GTCGGCAAGAAAACACTCGAGCCAAGCATTCAGCAAGAATGCCGCCGACT
TTACCAGAGCTTTGAGGTAAATAACTCATTATCTGAACATGGTACCGTTG
GATAGATAATGTTTATACATAGCCTGGGTACCATCCTACGTTGTTACCGC
TGGCTCAGTCTCTTTGCATATACACGTCGAGAGCAACTGAAAGATTGAGC
CATGGGTAACAACGGATAGGATGGTACCCAGGCTAGTTTATACCAGAGAC
AGCACACTGTGCCCAAATCAAGTGGTAACAGTTGCTTGAGCTGACAATCG
GGAATAATTACTTTAAGGAATTAAGTGAAAGAATAGAAGATTGTACATCT
CACTGACGGGACCACTTTCTTTTAAAGGATTTGGACGGAGAGCCTTTCGA
CGCTAGCCGCTTCCTTCAAATCGCCACCGGCAATGTCATCTCTGCTATTG
GACTAGGAAGGCGGTTTGAGCCGGATGATCACGACTATCAGGAACAATTA
AAAAGAACTGATGTCGCCTTCAAGCTCTTTCTTCAGGCCCAGATTCTGAA
CTTTTATCCAACTCTAAGATATGTCCCTGGCGTTCGTGGCTTGTTAAATA
AGTGGAGAGAAGTGTATTTCGCTTCAAAACGGTGGTTTTTAAAGATAATT
GACGACCACAAGGAGACCTTCGACCCCTCCGAGATCCGCGACATAACTGA
CATGTGCCTGCTGGAACTGCAACAAAGCAAGGGAAGTAAAACTTTCTTGA
AGGAGGAAAACACATGGCACATCGTAGGAGATTTCCTAGCGGCAGGTACA
GAAACGTCGGCGACGACTCTCTCCTGGGCACTGCTCTACCTGGCGCTCAA
CCCTGCGTGGCAGCGGAATGTCCAAGAGGAGCTAGATACCGTGGTAGGAA
GTGATGAAATTCCGCCTTACTCCAGACGTGAGGAGCTGCCCTTCACAGAA
GCGACCATCCTGGAGAGTCAGCGGATCCGCACCACGGTTCCCCTGTCCGT
GCCCCACTGCACCTCGTCCCCGACCAGCCTACAGGGGTACGACATCCCTG
CACACACCCAGGTGTGGGTTAACCTGTGGTCCGTCCACATGGACCCTGCC
TACTGGTCCCACCCGGACACGTTCGACCCCAGCAGGTTCCTGGACGACAA
CGGGAGGGTCAAGGTCCCAGAGGCCTTCATGCCGTTCTCCACAGGTAAGT
GTTGTCATACTCATACAGTGACATGCAAACAATACTTAATTGTTACATTA
TAAACATTGCATTTCTTCATTTCCTGTTATAGAATATTGAACCGTATTTT
TATACGGCTTGTCGCTGTCATGATCACCAACGGTTTCTAACCACTTCGAT
ATGTTGCTCCCTCTCACAGGAAGAAGAATTTGCCTAGGCGAGCAGCTGGC
CAAGATGGAGCTTTTCCTGTTCCTCACGTCACTACTGCAGCAGTTCACAT
TCAAACTGCCAGAGGGCGCACCTGAGCCAGATTTGTCTGGAGACATTGGC
ATCACCCTTCTGCCCAAACCCTTCAAGCTGCAGGCCATTTCCCGCAAGTC
TTCAATGTGA Coding sequence (CDS) from alignment at Sc0000407:8721..15530- >transcript:BL96084_evm1 ID=transcript:BL96084_evm1|Name=transcript:BL96084_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=1503bp|location=Sequence derived from alignment at Sc0000407:8721..15530- (Branchiostoma lanceolatum)
ATGGAGTTTGTCGACCTGACCACGGGTCTTGTCTTGGTCTGTTCGTTCCT
TCTGTCGCTCTTCTGTCTCCGGACATGGGCGGGACACCGCGGCCGTCCCG
TCAAGTTCCCCCCCAGCCCCCCTGGGCTGCCGTTCTTGGGGAACCTGCTG
TCCCTGACCCGGGAGCCCCACCTGCAGCTGACGGCGTGGCGCCGCCAGTA
CGGAGACGTGTTCAGTCTGCGGATGGGTCCTCAGGACGTGGTGGTTGTGA
ACGGGTGTGCCGCCATCAAGGAGGCCCTGGTCATGAAGGGCGCGCACTTC
TCGGACAGACCCGCGCTGTTCCTCACGGTTGAAGCTGCTTCACTCAGCAA
AGGAATCATCATGCGAAGGTATGGCGATGACTGGAAACGTTTCCGACGGT
TCGGTCTCTCCAGTCTTCGCCACTTTGGTATGGGCAAGAAAACACTCGAG
CCAAGCATTCAACAGGAATGCCGCCGACTTTGCCAGTCCTTTAAAGATAT
GGATGGGCAGCCTTTCGATCCCAGTCGCTTCCTTCAAATTGCCGTCGGCA
ATGTCATTGCTGCCATTGCACTTGGAAGACGGTTTGAGCCGGATGATCAC
GATTTTCACGAAGAATTAAAGAGGGTTGATGTGGGCTTCAAGTTGTTTCT
TCAGGCCCAGATTCTGAACTTTTATCCAACTTTAAGATATGTCCCTGGCG
TTCGTGGCTTGTTAAATAAGTGGAGAGAAGTGTATTTCGATTCAAAACGG
TGGTTTCAAAAGATTATCGATGACCACAAGGAGACCTTCGACCCTTCCGA
GATCCGCGACATAACTGACATGTGCCTGCTGGAACTGCACCAAGGCAAGG
GAGGTAAAAGCTTCTTGAAAGAGGAAAACACATGGCACATCTTAGGGGAT
TTTCTTGCGGCAGGTACAGAAACGACGGCGACGACTCTCTCCTGGCCACT
GCTCTACCTGGCGCTCAACCCTGCGTGGCAGCGGAAAGTCCAAGAGGAGC
TAGATACCGTGGTAGGAAGTGATGAAATCCCGCCTTACTCCAGACGTGAG
GAGCTGCCCTTCACAGAAGCGACCATCCTGGAGAGTCAGCGGATCCGCAC
CACGGTTCCCCTGTCCGTGCCCCACTGCACCTCGTCCCCGACCAGCCTAC
AGGGGTACGACATCCCTGCACACACCCAGGTGTGGGTTAACCTGTGGTCC
GTCCACATGGACCCTGCCTACTGGTCCCACCCGGACACGTTCGACCCCAG
CAGGTTCCTGGACGACAACGGGAGGGTCAAGGTCCCAGAGGCCTTCATGC
CGTTCTCCACAGGAAGAAGAATTTGCCTAGGCGAGCAGCTGGCCAAGATG
GAGCTTTTCCTGTTCCTCACGTCACTACTGCAGCAGTTCACATTCAAACT
GCCAGAGGGCGCACCTGAGCCAGATTTGTCTGGAGACATTGGCATCACCC
TTCTGCCCAAACCCTTCAAGCTGCAGGCCATTTCCCGCAAGTCTTCAATG
TGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000407 | genome | Sc0000407:8721..15530 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96084_evm1 |
| Biotype | protein_coding |
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