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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96097_evm0 >transcript:BL96097_evm0-protein ID=transcript:BL96097_evm0-protein|Name=transcript:BL96097_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=387bp
VQVRLSFIIYQNSRLFQSNQTAPSSMGTKTRVNSRVIASRFTGIELKNLS
IPVVTRYLPIIQNSANNTVKDIRCVSWDIDAEEGVGSWSTSGCDFVGIDD
GRVVCNCSHLTNFAVLMDIYEGLHSSALDIISKVGIALSITGLVLTIISY
LIFKELRQTRPQHILVNLCVALLATLIIFLAGIEATNSPVGCTVVAFFLH
YFLLAVFMWMAVEAFNMYLAFVKVLGAHVSKLLLKAAIFAWGLPFLIAII
TLVVDVPSTYPNENETYRSNSICWLQGNQLYYGFLLPVGFVLLFNYIVYI
MVISKLVCRRRTEGRVSDSGSSAITQQVRIAIAVMVLVGLTWIFGFFMIS
DGRIVFSYLFCIFNSLQGFFIFIFHCLRQKEVQNMWF Run BLAST on NCBI mRNA from alignment at Sc0000473:126514..137636+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96097_evm0 ID=transcript:BL96097_evm0|Name=transcript:BL96097_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=11123bp|location=Sequence derived from alignment at Sc0000473:126514..137636+ (Branchiostoma lanceolatum)
ATGTGCAAGTTCGTCTTAGTTTCATCATTTACCAGAACAGCCGGTTGTTC
CAGTCCAACCAGACAGCTCCTTCCTCAATGGGCACAAAAACCAGGGTCAA
CAGCAGGGTAATTGCGAGTAGATTCACTGGCATTGAACTCAAGAATCTAT
CGATACCAGTAGTGACAAGATACCTTCCTATTGTAAGTCAATTAATGTGA
GCTTCTATATGTTTGATTATTTCTTCACAGCAAAGTATATTTTCAAAATA
CAATTGGCAGGTTTTGCTTTACTGACTGCATAAAGTACTAGTTAAATCTA
AAGAGTTGTTTTCTTTTACAGAACTAGCTATTCCTGTCATTTTCAGCTTT
TACATTATATCATAGCTATTGACATAACCATCATACACATTTGTTTTTAT
ATCATGGTGTTATCGTTGTTTCCTGTATGCTATTTTTCTGATGTAACAAA
ACACGTTATCTAGAATTTGAAAAAAATATGAAAATGTACAACCAAAGAAT
GGTCTTTTTAGGCACTTTTACTTTATCGTTCAGTAATTGCTCAAATCTTT
GTATCCCTTCAAAGATTCAAAACAGCGCAAACAATACTGTCAAGGACATA
AGATGTGTTTCCTGGGACATTGATGCTGAAGAAGGGGTTGGCTCTTGGTC
AACATCAGGATGTGACTTTGTTGGGATTGACGATGGCAGGGTGGTGTGTA
ATTGCAGCCATCTTACCAATTTCGCTGTTTTGATGGTGAGTAAATTCTGA
AATATAGGCAGTTAAAGGACAGCACCACAGGATCTTGAAACCATTATTTC
CCAGTAGTTTTCATATTAAAACCTTGAAAAATTATTTTTTGCGTTTCGGC
GCATGCGCGCCGAAACGCATTCTCCTGGCTTTTACCTTCAAGCAAGGAGG
AAGGAAGGAAGCTTGGTTCAACACTGTGTCGCAGATTTGCATGTGACACA
GGACGGCGCAGATTTGCATGTGACACAGGACGGCGACCGCATGTAACTGC
TACAACTGTTCGGAAATATCATTGCATTGTGGTTTCGGACTTTGATATCC
TGAAAAATGACCATATTACATCTATTCCACAAGATTGCAGAAGAAAAAAA
ATGATTTCGTCAAGAAAACGACCAAAAATCGGCATAAATGATACCATATA
GTGAGGTTATAGCATTACGTCCAGAGTNNNNNNNNNNNNNNNNNNNNNNN
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TTTTTTTCATTAATAAATAAAGAAATATTTTATATTTGTTATTTTTAAAT
ATTCATTTAATATATACAAGGCCTTTGTCTTATGAACAGGACTTCATAGA
TTCCAAACCCGGCATTCGAATTTTTCTGTTCATTGTAATGGAAAATACCG
TGCAGCGGCTCCTATGCGCGGTAAGATGATTCTTGCAAAACACTCGCCAC
TAAACTTCTATCCCCGATGTAAACAGAGGCTCTTGATGTTGTTTGCAAAA
CAGCGATTCTTTGTTACAGTAGCAAATGCTCCATTGTTCAGTATCGACTT
CATTCAGACAACACGGACGTGGAAAGTGGCGCCCCTCGGCACAAAACTAT
GGGAATTTTCATGAATTTTAGCAAAATTACCCAGGAAAATAAGGAAGAAA
TGTTGTAAATGCGGAAACCAGAATAATACGGATGAGGTAGCTGTTGATTT
GTTTGACATTTGGTAGTCATTTTAGATAGAACCTTAGCTGTTATGAACTT
CTATTTCACTTAATTACCATAGTGCTGATGATTCAATGGTGCTTTTTCAA
ATTTTATGTTTTATTGCGTGCCATGTACATAATTACATTGATAGCTTTTA
TAATGAGCCTATTATACATTTTACAAATAAGTACAAGTTGTAGGCCAAGA
CCAGCTTTTTCAAAAGCACTTAAGTTAAGTGACGTAACTTCAAAATTGCT
TTCCCCAATCTGCCTTTCTCTATTAAAACAGTACTCATTTCCCAAAATGA
CAATTTTTCTTATAGACTGAACAGCCCTTGAGTGACTTCCTCTGGCAGAT
TTTACTTCAAGTAAAGGGAAAAGACAATTCACACTTATAAACGTAGCCGA
AACGCCAGCTTTTTTTAAAAGCTCTTGTTTTACATTAGTCCGCCTATTAT
TACCCTGTGCACCCGTTTGAACTTCGCGCTCTCCTCACTCTCCCCCGTCG
CGATTGGCGATTACGTAATGGTCTGCTGCCTCGTTCTGGGGCAGCTCTGA
CGTCACCGTTCTGGAACAGACTATTGGTTCTGAGGCCGCCACTTTGCGAG
TTGCACGACGATCGAATCCGTTTACAGTAGAATTGAGTTCAGATTTCTTA
TTGTTGCCGTTGTGATCGAGGACGGTCGTTGAAGGTTTCTACAGAGTTAC
AAGCCACGACAGGTCTCCCAAAATCAGCTAGCCGGCTTTGATCGAACCCC
AGTTGATATCCTCCCGTGCAGTGGGAGGGGGGCAGCCACCATGCCGGCCT
GTGTTGTTCGTAATTGTAAAAACTACCATGGGAGTACGAGGGGCAAAAAA
GAAGTGAGTTATCACAGATTTCCACAGGACAAACGCAGGCTTCACGAGTG
GCTGATCGCCGTGGAGCCGCACCTCAAACCGACTACGACGATTNCAAAGA
AGAAGTGAGTTATCACAGATTTCCACAGGACAAACGCAGGCTTCACGAGT
GGCTGATCGCCGTGGAGCCGCACCTCAAACCGACTACGACGATTGAGAAA
ATTCGCGAAAAAAACGCCAATAAAAATCATGGGGTGTTTGTCTGCTCGGA
CCATTTCTCCCCCGACTGTTGTTACGACAACCCAAAGGCAAAACTCATGG
TTCCTCACTTGAACAGATACCCCCCCCCCCAAACTGTTGTCAGATGATGC
CATCCCAACTATCTTCGGAAAATCAGTGGATTCCTCTGATTCTCAGCACA
ACAAGACAGCCAAGAAACAGGTAAGAAATGCTTCCTACAAATTATACTAA
TAATTGTTTTGTTGTCCATGACATGTGTATTCATGTACTAGTATATACCA
TACTTCTATGTTTCCTGATTTAAGTACACTTTAACAGTAACCTGCTATGT
TTTGATTTATTTCATTACAATTCATTTATCAATTTTCTTTGTTACAATTA
TTGATGAATGTGAATTTCTTGGGTTTTCATAATATTTATTCTAGTTTGTT
TATTTATCATACCAAAATAGGTCGATGATGAAATGGGTTTATTATCTGTT
TGAGCATTTTTTCTGTTTCTATGTATTTTCGTTTGATTATTTTTCATACC
AAAATAGGTTGATGATGAAATGGGTTTATTGATCTGTTTGGGCAATTTTT
TTCTGTTTCTGCAGTTTCATGGCTGTCTTTTATCAATTCAATAACAAGTG
CTTTTCAGTACTGAAAATGAATGCATTTTTCATGTCTTGGGAAATATAAT
TTGTTAAACCTAACAAAATGATTGACATTTTAATCTGCTCCTATGGAAAT
GAGCCTGACCAAGCTGCTATGATGATGATGTTTGTACAATTGTAATAACT
AATAATGCAACAATGCACTATCATTGTAGTACAGCGATATATTTAGGGAG
GAGGGCATTGTTGGCCTGGTCCTGACCTGATTTTTAGAAATAATTTTCTT
TGTGTTGTTTCACATCTCAGTGATATTTTTCTGTCCAATATTCCAGCTCA
TCGATGACTTGCTTCAGTCTTCAGGAGACATCTTCAATATAAAAAACCTT
AGTATGGGGATTTTAACTTTTTTAAGCAGGGTATCTATTCTTCTAAAAGT
ACAAAAAAGCCATTCCAAAAGAAGGTGTGATTAAGGGCAACCCTCATGGC
AAAATCTTTAATTTATTTTGGACTTTACTTTGTGATACTTTGTCGTAATT
GGATAAAAGACTCTAGTCACACTACTGTACTATAACCGTTACGACTTACT
GTTATTATACATATCACTTTTGTATTTTAGGATATCTACGAGGGCCTGCA
CAGCTCTGCACTGGACATCATCAGTAAGGTTGGGATTGCCTTGTCAATTA
CAGGCCTCGTCCTTACTATTATCAGCTACCTGATATTCAAGTAAGTTTTT
CGGAGAGTTATTCAGGCTGTGTATCAACGATCAAACATAGATAGCTTTGG
ATTTTTTAGTATGTTGGAACAGCACTTAATATAGATAGTGGCACTGTAAC
ATTTAGCGATGGTGCAAAACTAGTACCAACATGCACACGGTGATTAAATT
GATGCCCTCGCGTTTACCGTTGCGCTGAAGAAGACTGGTCAGTAGTACTG
GATCTGGTGTCAGTGAATACCCACTGTAGCTGTAACATTTGTTTCGTTCC
CATAATGTTACAACTCATACTTTGTTTCTAATGCATGATGACATAAAAAT
GCTGCCCAGTATATTTCAACTAACATAAAAACAATGTATTTAATAAAGTA
TTAGTGTAGATATAACAGACCGCAATCAAGTTGTCAAACTTTTTGTGCTA
AGTATAGTTTCATATAAGGTATTGTTTTATAATTTGTGCTTACTCTTCTA
TGAAGATGAAATTGCTGATGCTGAATGTTTCTTAACGTGTATAGTTCTAA
TAGTTTTGTTCATGTTTATTTGTATATTCTTTCCCTTTTGCTTCATTTTT
GCAGGGAGCTTCGTCAGACAAGGCCACAGCACATCCTTGTAAACCTTTGC
GTCGCCTTGCTGGCAACTCTCATCATATTCCTGGCTGGCATTGAAGCTAC
CAACTCCCCTGTTGGCTGTACCGTCGTGGCGTTTTTCCTACACTACTTCC
TCTTGGCTGTGTTTATGTGGATGGCCGTTGAAGCCTTCAACATGTACCTG
GCATTTGTGAAAGTTTTGGGGGCACATGTATCCAAACTTCTTCTTAAGGC
GGCTATCTTTGCATGGGGTGAGTTGATTGACATCACATTACAATATGGTA
TCAAAAAGAAATTGACAACATTTAAATGTCGTGGAAAATTCATCCAAATG
ACCGACCCAATCGCGTCAGTAAACACATGACGTCAGTTTTTCGTTAAAAT
ACCTGGAAGCTTTTACCACCCACCGTTTAGGTGGATAACAATACTGTGAC
GCACGTAGAAATGTAGGCATCATTATCAACTTTATTACAGTATCCTGATC
CTTGTCTTTTATCATTTGGGCCATGTGCTTTGTTCCAAACAAAATAGAAA
TGTGTTCCAATTCTGTATACATTATTACAGACGTTGAGATGAATATGTTA
AAGATGTAAACATGGTAGTTTGAACTAGTTTCAGTAGTAGATTTTTTCCT
ATAGCTCTACTAATGCATGTTTTCTAACGTTCCAGGTCTTCCCTTTCTTA
TTGCCATCATTACCCTTGTTGTGGACGTCCCCAGTACCTATCCTAATGAA
AATGAGACCTATAGGAGCAATAGCATGTAAGTTATGAAATATGACTTTTT
TTCAATAGCAACCATATCGTTTTTTTAATGAATTACGAATGTACTGTTGA
CATTCAGTCTTCTTGATGAATTCAAAATATATGACAGCCGAAATGAAGAA
CAAAACCTTAAATACGGGAAAACGTTGACGGGTATTACCTTCCAATACAC
TAAATCAATCTTAAAACATAGATCTTACTATACCTCATTGAATAATAGTG
GTTCTAAGAAAGTTCCTTTTTTTTGCGCAACTAATATTCTTTGAAATGGA
CTTTAAGGTGCTGTATTGATATAGTAAATAAAGCTGTAACTTAATGTTTT
TTCTGTGTTTGAACAAAAAACCACACTGTAAGGCACTAGGAATTATTGGT
AAGATATGCGAAACTTTAAGATCAACATATGGCAAAGAAAAATGGTTCAA
CCTATACTATTTTCTTTACTGTTTCAAGGAGCGTATACAGTCAGCTTTAG
ATCTCCAGCGTATTCTTTATTGTCACTTTGATACATTATCACCAAAACGA
TATCTGAAATAAATATGGGTTGATCATAGTTGTAAGCTTGAAGGAGACAC
ATTTCGCAAACAACCTCAGTGCCTTTGGGTAAACCTTAAGCTTGTCGATT
AATTCCAACTAGGGTACTGTTTTCTATGTCAATGTAATGTATTTTGATGT
TGTTTAGTTGCTGGCTACAGGGTAACCAGCTGTACTATGGGTTCTTACTG
CCTGTCGGGTTTGTACTTCTGTTCAACTACATCGTGTACATCATGGTCAT
CAGCAAGCTGGTCTGTCGGAGGAGGACCGAAGGTGAGTTCTTAATAGTTG
AACATGAATGCAATATAACGCGTAGAACATATTGTTCTAATGTCCTTTTG
AAATACTGCAAGTTTGATACTTTCAGGATTGTTCAATGTGTAACTATATG
ATGCAGCACACTCTTTTTGTATGCCTTGTTTCTCCGTAAACATTTTGGCA
ACCCTTATTCATATTTCCATGATAATTTACATGCTTTAATGCGTAAGGGG
GTTCACACGAGTGCGCATATATAAGTTTATGGCAAAAAAAGGAGTTTCTT
TATGGGTCGATAACCAAGCTAAATAACGATTGGTCAAAGTAAAAAAAAAC
CACAAAAACGTCTCCCCTAAAACTTATCTTAAAACAGGTCAATACGAAAT
TCTGAAAGCTCCCACCCCTTAACATCACAGTTATCATGGGAATCACGTTT
TTATAGGGAGAGTCTCTGATTCCGGCAGTAGTGCGATAACACAGCAGGTG
CGCATCGCTATTGCTGTCATGGTGCTGGTCGGACTCACCTGGATCTTCGG
CTTCTTCATGATCAGGTAGAGATTCAATCAGATTATAGTAAACATTGTTC
TAGTAGGGATTTAGATATGTGATCCGTCTATAGATATTTAAAGACGATAA
CGCCATTGGTCCAGATCAAAATTCATTATTCTCACATCTGCATTTGATAA
GAGATTTAGATCAATAGAGTATTTCATTGACAACCTGGAAAAGAATACTG
TCCTAAATTGTAATGCAATAAAGTAGCAACTTGATTTCCCGTCTATGCTT
TCTATAAACATTCTGAGCTGTTATTAACTTTCTTAACATATTCACATTAG
CCAAAACTGTATATCTGATAAATACAACACAGCATGTTACAAACGATGTA
ACCTGTATTGATCAGTAAAGAAAAAAAAATCCCTAGCGCAGAACGATGCT
TGACTGTAAGACTAGCATAAACTACTATTTATGTACCTTTTGTTATCATT
TTTGAGAGCAAATTTCATATTCCAGGTATTTATATCGATTTTCGACAAAT
AAAATCGATTTTCGACAAACCAATAGCTTTTATCTAATCACTCTTCTGTT
GCGTTCTAGTGATGGAAGAATCGTGTTCTCCTATCTATTCTGCATATTCA
ACTCACTGCAAGGATTTTTCATCTTCATTTTTCACTGTCTACGACAGAAG
GAAGTCCAAAACATGTGGTTTAA Coding sequence (CDS) from alignment at Sc0000473:126514..137636+ >transcript:BL96097_evm0 ID=transcript:BL96097_evm0|Name=transcript:BL96097_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=1163bp|location=Sequence derived from alignment at Sc0000473:126514..137636+ (Branchiostoma lanceolatum)
GTGCAAGTTCGTCTTAGTTTCATCATTTACCAGAACAGCCGGTTGTTCCA
GTCCAACCAGACAGCTCCTTCCTCAATGGGCACAAAAACCAGGGTCAACA
GCAGGGTAATTGCGAGTAGATTCACTGGCATTGAACTCAAGAATCTATCG
ATACCAGTAGTGACAAGATACCTTCCTATTATTCAAAACAGCGCAAACAA
TACTGTCAAGGACATAAGATGTGTTTCCTGGGACATTGATGCTGAAGAAG
GGGTTGGCTCTTGGTCAACATCAGGATGTGACTTTGTTGGGATTGACGAT
GGCAGGGTGGTGTGTAATTGCAGCCATCTTACCAATTTCGCTGTTTTGAT
GGATATCTACGAGGGCCTGCACAGCTCTGCACTGGACATCATCAGTAAGG
TTGGGATTGCCTTGTCAATTACAGGCCTCGTCCTTACTATTATCAGCTAC
CTGATATTCAAGGAGCTTCGTCAGACAAGGCCACAGCACATCCTTGTAAA
CCTTTGCGTCGCCTTGCTGGCAACTCTCATCATATTCCTGGCTGGCATTG
AAGCTACCAACTCCCCTGTTGGCTGTACCGTCGTGGCGTTTTTCCTACAC
TACTTCCTCTTGGCTGTGTTTATGTGGATGGCCGTTGAAGCCTTCAACAT
GTACCTGGCATTTGTGAAAGTTTTGGGGGCACATGTATCCAAACTTCTTC
TTAAGGCGGCTATCTTTGCATGGGGTCTTCCCTTTCTTATTGCCATCATT
ACCCTTGTTGTGGACGTCCCCAGTACCTATCCTAATGAAAATGAGACCTA
TAGGAGCAATAGCATTTGCTGGCTACAGGGTAACCAGCTGTACTATGGGT
TCTTACTGCCTGTCGGGTTTGTACTTCTGTTCAACTACATCGTGTACATC
ATGGTCATCAGCAAGCTGGTCTGTCGGAGGAGGACCGAAGGGAGAGTCTC
TGATTCCGGCAGTAGTGCGATAACACAGCAGGTGCGCATCGCTATTGCTG
TCATGGTGCTGGTCGGACTCACCTGGATCTTCGGCTTCTTCATGATCAGT
GATGGAAGAATCGTGTTCTCCTATCTATTCTGCATATTCAACTCACTGCA
AGGATTTTTCATCTTCATTTTTCACTGTCTACGACAGAAGGAAGTCCAAA
ACATGTGGTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000473 | genome | Sc0000473:126514..137636 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96097_evm0 |
| Biotype | protein_coding |
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