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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96242_cuf0 >transcript:BL96242_cuf0-protein ID=transcript:BL96242_cuf0-protein|Name=transcript:BL96242_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=168bp
HICLSQLRLSVQLIQTSVDQDILVQMEDTKAPLLQNEVTPPHSYHHGATA
TDNTPQPQHPYDAPYPQPGTPVYYGAITQAGNSTVILAVPPTFSPDPVNM
QCTNCGQRITTTTAVNTGLATWVACGAICALGGFLGCCFVPFCLDSMKDV
RHTCPSCGAHLGTFHRMK Run BLAST on NCBI mRNA from alignment at Sc0000158:78014..81387- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96242_cuf0 ID=transcript:BL96242_cuf0|Name=transcript:BL96242_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3374bp|location=Sequence derived from alignment at Sc0000158:78014..81387- (Branchiostoma lanceolatum)
GGCATATCTGCCTCAGTCAATTGCGACTCTCAGTACAACTCATTCAGACT
AGTGTTGATCAAGGTAATATTATGCCATTTGCGTGTACCCTATACTACTA
TGAAATATGTAAAGCTATCAGCTAGACAATAGTACATTTAACTTTGTTTA
ACATCAATATCAACTCATGGTTGTCATCATCGCTACTGTTCAGTCCTAAA
TATTTCCATTTCCATTACGTCACCATTGCTAAAATCCGAGTCCTTGATGT
ATTGAATGCACTGTTACCAACTTGTGCCTTTTTAGAAATCTAATTTCAAC
CTTGATTAATAATAGCAAATGCACTGAATATGACATCTAGGTAACTTTTT
TAAACATAAACAGATAAACTGTGGATAGCATAATGATAATCTGGAGTTTT
GAATAATTGGTTTCTTTCAGATATTCTTGTTCAAATGGAGGACACTAAAG
CCCCGTTGTTACAAAACGAGGTGACGCCTCCCCATTCTTACCACCATGGA
GCCACAGCTACCGACAACACACCCCAACCACAACACCCATATGACGCCCC
GTACCCACAGCCTGGAACCCCAGTTTACTATGGGGCAATCACTCAAGGTG
AGATATAAATTGTTCTCGTGTTGACATTAAGGATATTGAAATCTTCATCA
AATCCATAGGATACGATTGAAGAAAAACCACCAACATATTACTAGTTAAA
CTATGATCAGAAGCCGTTGGGAGAAAACATATTGACCAAACATGATAACA
TGGGAGTCAACAGCAGAAGCAAGAGTTCTGGTTCCGAAAAAATATATATT
TTCAGAAACAAAAAAGTATGATAATTGTATTTGAACAAGATTTGGTTGAT
TTTGTATTCAAAATGTGTGGTCTTTTAGAAAATGGACAATGCTTCTGCTG
TCGAATGCCCCCTTTGATATCAAAGCTATTTCTCGATTTCTATTGTCTTA
GTCACTATTGACAAAACACTTTCCTACAGCTGGAAACTCCACCGTGATCC
TCGCTGTCCCCCCGACCTTCAGTCCGGACCCTGTCAACATGCAGTGTACC
AACTGTGGACAGCGGATCACCACCACTACCGCCGTCAACACGGGACTGGC
CACATGGGTCGCCTGTGGGGCCATCTGCGCTTTAGGGTGTGTCATATCAT
TCACTCACCTACTGACGTAGTGGTATAATGAACCACTTATTGGTTACACA
AATAACAGATTCATTGTTTTTGTTTGGTGTAAGACCATTCGGAGATTCGA
GTACGCATATGCAGTGTCAAAGGTGAAGGCCCCCGACTTGTAAACAGCTC
TCGTCTTGAAATTGTCTGGATTTACATAACGATGTTCAGACGGGTTTTGT
TTACGTCTGAGGGGCATTCACCTTTGACACTGCACATACGTACTCGAATC
TGCAAGTGGGCTTATTCACCCCAATAATAGCTGCTGGGTCCCTCTCGCCC
TCTCCCCTAATATATTTTGGTTAGATTAGCAGCATTCCCTTTTCATAGCC
ACTTTCTTATTTTATCGCAAATATTGACTGGATACACAAAAAAATCAATA
TCTATTTTCAAATTGATACAATGATACATGTAGATGTCTTATAGAACTCA
TGGATAGATAGCACCAGAACTGTTGTCTGTAACAATAAAGTTCTTTCTAG
AATGATCACAGTCCTCCACTTGTTTTCAGTGGTTTTCTCGGCTGTTGCTT
TGTCCCGTTCTGCCTGGACAGTATGAAGGACGTGCGTCACACCTGTCCAA
GCTGTGGGGCTCACCTGGGCACCTTCCATCGGATGAAGTAAACCTGTATC
AACTGTTGTGATTGGCTTGAAAATGATCCATTCACTCGGGCATTTAATTG
ACGTCATCATAATGATAATGCGTATCCTGCGTTGACCGTGTTGGCGGATA
GTTGGATTGAGCAATGCTATCTTCGTGTGTTTTACAAACGTGCGCTTTAA
TCAAATATGGCGCAGATGACGTAGAATGAAACTAGAAAGGCAACGTTTGC
AGGAGCAAATGCAACATGTATCGCCCAGCCCATGTTGAAGCTTCACAATT
GCACATAGCTTGAGTAGAACACAACAATAACAATAAAAGGATGGGAGCCA
GGGAGTAGTGAAGTTGTGCCTGTCTGCACCTGTCAGAGTACTAGTAGTGC
CCCTAATTAAATTGACTATTTAAACCAATCAGGTTCAGCTTGATAAACCG
TGTGTATGTTACAACGCGCTCTCTCATTGGCTGACGAATCAGTCCACCTG
GCCAGATGAATAAAGATGTGACCTAAAGGTCAGTGACCCCATATGAGGAA
ATTAGCCGATGTTCTCCCCAAAATACCCTCTAAAATCGTATTTTGAAGTG
TTGTATGCCAAAAGTGCGAATGGGATTTCTTTGAATATTTGTTCAATGTA
CCCCCATAGCAAATTTCAGGTCATTTGGATGTAATTCCAGAACAAAGGAG
GCACAAATGTACGGTTTGGGGCTAAAATGGCAAAAAAAACCCTCAATAAA
ATCATTTCAAAGGCATTTATAAAAAAATGGGGGAAAAAACGGGGGTATGC
GCTAACTCTATCTGTATTCCAAAGTTCAGCCCATTTGGCCCAGGGATGAC
CGAGATGCATTGCTTTGAAGATTTGACAGGAGGAGGAGAAGAAGAAAGAA
ACATGACCAAAGACAATATGTATCGCCCATACCTATAGTATGGGCGATAC
ATAAAAACATTATATGAAGATGCTTAAAGATCAATGATATGCCTGTAGAT
GACCTTTGAAGCTAGACGGAGTAGGGTTCAATGGATTTTACCGATCTTGT
ACTACGCTGTTTTTCTGATCTTATGTACTAGCGTGCATAGCTATATAGCT
AGATTGTCTCTAGTCTGTATACCGAATAGCATGAATTAGATAATTAGTAC
TTAAAAATATTAGATATCAGCAATAGTTCAACTGTCATGGATGTGCAAGT
TTCCATGATTGTACGTGTTAGAACTGTAGCGTGGCAAACACAACTTGTCC
TTGTGCTATTGATGGATGTCACATTCACTCAGAATCAGTTAGAAAACGTC
TTCAAATATCCATATCTTGCTACTATAAATGTCCTTGATCTCTTGGTTGG
TTTACTATCATAATCATCTTCCTTAAATGCAATCTAAAACCTCTACATCA
AGTACTGCAAAACGTACTCCTTTGTTTATGGATTGTTGACCAAGGATGTT
AGACATTATGCACTTTTCATTGCGCCTTGGTACTGGTGATTAGGAATACC
ATATGCCTACATTTTCATTTGCTCTCCACTCTAAGAGATTTAGTATGTAT
ACTACCTGTGCAAAGATTGATGTCAGGTTTCCTTTTTCTCCAGTAGAGAC
AGAGAGATGTAAATTAAGTTGCGC Coding sequence (CDS) from alignment at Sc0000158:78014..81387- >transcript:BL96242_cuf0 ID=transcript:BL96242_cuf0|Name=transcript:BL96242_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=507bp|location=Sequence derived from alignment at Sc0000158:78014..81387- (Branchiostoma lanceolatum)
CATATCTGCCTCAGTCAATTGCGACTCTCAGTACAACTCATTCAGACTAG
TGTTGATCAAGATATTCTTGTTCAAATGGAGGACACTAAAGCCCCGTTGT
TACAAAACGAGGTGACGCCTCCCCATTCTTACCACCATGGAGCCACAGCT
ACCGACAACACACCCCAACCACAACACCCATATGACGCCCCGTACCCACA
GCCTGGAACCCCAGTTTACTATGGGGCAATCACTCAAGCTGGAAACTCCA
CCGTGATCCTCGCTGTCCCCCCGACCTTCAGTCCGGACCCTGTCAACATG
CAGTGTACCAACTGTGGACAGCGGATCACCACCACTACCGCCGTCAACAC
GGGACTGGCCACATGGGTCGCCTGTGGGGCCATCTGCGCTTTAGGTGGTT
TTCTCGGCTGTTGCTTTGTCCCGTTCTGCCTGGACAGTATGAAGGACGTG
CGTCACACCTGTCCAAGCTGTGGGGCTCACCTGGGCACCTTCCATCGGAT
GAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000158 | genome | Sc0000158:78014..81387 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96242_cuf0 |
| Biotype | protein_coding |
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