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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96243_cuf4 >transcript:BL96243_cuf4-protein ID=transcript:BL96243_cuf4-protein|Name=transcript:BL96243_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=144bp
MADGKTPLMQGEETAPTAPPPAYDDAVSHPNMAQQQNQYGGQYAQPGSTV
YYGTIPQSPPTVVLSPPPTNAACPVRIQCTNCGQQIITKLTYITGMTTWL
ACMAIFVFGGFLGCCFIPFCVDSLKDVRHTCPSCGAHLGTFRKI Run BLAST on NCBI mRNA from alignment at Sc0000158:81509..86661- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96243_cuf4 ID=transcript:BL96243_cuf4|Name=transcript:BL96243_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=5153bp|location=Sequence derived from alignment at Sc0000158:81509..86661- (Branchiostoma lanceolatum)
GAACTAAATATGTTGATGCAGTTCGTATTATGTTGAGCCCATAGGTATTC
CGGAAATTCCAGATATTCCGGATATTCCGGATATTCCGGATATTCCGGAT
ATTCCGGATATTCCGGATATTCCGGATATTCCGGATAATCCGGATATTCC
GGAATATCCGGATATTCCGGATATTCCGGAATATCCGGATATTCCGGATA
TTCCGGATATTCCGGATATTCCGGATTATCCGGATATTCCGGAAATTCCA
AATCTTCACGGGTGATTTTGGAATTTATGTCAAATTCAATTCATGCATGG
GGAGGTAGATTGGCAAAGTATCTCTCGCAAATGTTGCCTTTCTACATGTC
TACATATTGTTTCGATTTGCCCAGGTGTTTTTTTGGGACAGCCCACGACT
TGCATGAGGGCGAAACATGCTGTATTTGCTCAGGGGCAAATGACGGCCTT
TCTAGTGTACCAATGTATTTGTTGTTTTCTGACGTGTACTGTTTTAGTTT
TCATAAGGCTTTTGTCCGAATTTATTGATCAGTAGGGCATAATGATCTAA
GCTAATCTAATCTAACACACACGTATTTCTATATTTGATCATCTTTCATG
GACTAAGTATGAGTAGTTTGTGCCTCTCAGAGATAAAGAGTTGATCAAAC
CCAACAAAAGAAATAAAATCCCTATTGTAGTTTTGGGTTAGAAACTTTTC
ACTTAGGCAGCTGCTCCATACCTTCACCATATTTACATTATGTGTGACTT
AAAATTCTCACTTCAAACATAGCTGAGTAGATTATACAAATATGAAATCC
CTGAGTAGTCTTTGCTTTTTTATTTTTGCATTATCTGCTTTACCACAGTT
AGATACATTGTAATTATTAAAGTTCTATCCTTCAGGAAGCTACCGAAGCA
TTCTCTTATTACATATGCAAATGACGTCCATATCTATGTCTCATGGTATT
CATTTTCATGTGTCAATAGTAATCGCTAAGATATTTTAGCATTTCCTCAT
CATCACAACTGATGATAACAATCCATTTATAGATTCTTACCCTTTGCTGT
TTAACTACAAAAACGACTGACGCTAGCGGAAACGCGACCTCCTTGGCAAA
GGTAAAAACGTGATACCGGTAAAACAATATCGCTACCCACTTAGTGCACG
TGGTGTGTACCGGCACCCAGTACCGCGAAAATCATTTAGGTACAGGTCTT
AAATACCGGAACATCAACGTACAGTTACGTACCTGAATATCACTCACTTA
GTTGTTATTCCTACAACAAAGATGACAATTCAGCACTTCTAATATATTGT
ATGGGCTTTAAAATCGCCACCATATTTGATGGACCGGAATGGAAATCGTT
ACGTCAGGTGGCTCACACAAAAGCCTAACAAGTCCGGAACCTAGACTACA
TAAAACTCAAATATTTAACCCGTCTGCGTACCAAACTCGTGATAGTCATC
ATGGCTACTGTTGACATTGTGTAAATGACCCCGCATTCAGGAACTAACCA
TTTTGACTAAAAGGGGCAGCTTTTACATATGAACGCAACTTGCTAATTTA
TTTCTAACAATTGGTATTGGGGAAAGCTGTTATCTTTTATAACTACCTGA
AAATACGTGTTACTCTGTGCTTTCGTCCGATTTTGGGAGCCCGTGTGTGA
TTTTTCTTCATATTGTACCTATCCCTCTTGGGTTACTAACTAACTAGTAC
CATGTGACTTACCTGAAGGTCGCTGCTGGACCAGCCATATGAAGGTAAAG
TTCACCCTTTTTTCATTGTCTTTGGCACACAAAATCTAAGGGCCGGAGTG
ACTCCCTCCATCTTAAGACGAGCATTCGAGACGTCTACCGGGTTCCGTTA
TTTTTGTTTGTAAGTAAAAGTATTACATATCACCGCGAGTACGTTGCTTT
GGCTTAAACGCTGTCATTCAAAATGATGACAAAGTTTTGAGGTCCTAGAA
ACGTTTGATTTTTGTCAGGCTTCGGAACATATTTTAGTTCGATGATAGGA
GAACCATAGACCTGCTACGACTCAAGGTTCGAAGGTCGTCATACATAAAG
AAAACAAAATGTGTTGATCTGCACCTGTGGAATTCTAATTGAGTTAGACA
GGACTTTAATACTTCTAAGAACGTTAAGTTGTAATTTGATTTGCATGACA
CTATAAAAAAGTAAGATTAGATATTCTATCTTGTGGTTTGAACTTTACCA
TATATCTGTGTGACCAGTGTTGTACTACCATAGTACAAAAACAGGCCGAG
ACATGTTTCAGCAGACTTTGAGATTCCGTAAGTATGACGTTAATGCATTG
ATATGTTTATTTACATACGCTACACTTAGAAATGCCATGGGGACAGTTGT
TAAATGGCAGTATGTTGTCTCTTTTAAATGGTGCAAACACGTGTTCTCTT
ATAACCATGCATTGCAGGGCCAGTATGGCAGACGGTAAGACACCGCTGAT
GCAGGGTGAGGAGACGGCGCCCACAGCCCCTCCTCCTGCCTACGATGATG
CTGTATCTCATCCAAACATGGCTCAACAACAAAACCAATATGGCGGCCAG
TACGCACAGCCAGGCAGCACCGTGTATTATGGAACCATCCCACAAAGTAC
GAGAAAGAAGGAATGAGTAGCATTATCGCTTATATATGTTGGGCTTTTTC
ACAATGAATCAATTTCACAATTTGATTTACTTTGTATCTATTTGATTAAC
ACTTAGTCAGTTACTCGAGTTGCATAGCAAAAGCTTTAAATATACAATGT
ACGAATGAGACTGTTTATGGTTTCAACGGCGCATGCGCAGCGAGATGAAT
TGTGAGAAATATGTCGAAGGCGAAGACCCCTAACTTGTAAACAGTACTAG
TTCAATACATGTCCTGACGTATTTGGTTACGTCTCAGGGGCCTTCAACTT
TGACATTTTAACCACAAGATAATGGGGAACAGCAAAAAGTTGTATTTGAA
TGTCATCTATGGTTTCTTTTAGGTCCTCCAACAGTCGTTCTCTCTCCCCC
TCCCACCAATGCTGCGTGCCCAGTCCGCATACAGTGTACCAACTGTGGTC
AGCAAATCATCACCAAGTTAACATACATCACTGGGATGACAACATGGCTG
GCCTGTATGGCCATCTTTGTCTTTGGGTAAATAAGAAATACTCTCGTCTT
TCCCTCCTCTTACTATATATATATGACTAGTAAGCCCTTGGCACATCTTG
CAATGTAGTGACAGCCTTTGCTGCTGTTTTGACAGAATAGTCATGAATTG
TCCAGAGAATGTTTTTTAATTAAACTGTAGCTTTTATTTAATTTGATAGA
AAGATACATACACACAAGTACATTATATCCATACAGTGCATATATTTACA
TATAAATTCAGATAGAAATGAAGACTGCTACCATATCTTCTAATGCTAAC
TCTAACATGTAATAAAGAGGTTCACGACTCTAAGTAGGTATGTGCACGCC
AACGGTATTGTCAAAGGTAAAGGTCTTTGAGACATAAACAAAGAATGTAT
GGACATCGTTATGAAAATTAAGACAATTGTGGATACAAGAACTTTTTACA
AGTGGCCAACACCTTCGATATATTGCTAACAATACATTTCGCTGCACATG
CGCACCAAGAATCGCAAACCTCATCATTCTCAGACTTCCCTGCTGATACG
AGTGTTTTGTTCACAGAGGATTTCTCGGCTGTTGTTTCATCCCGTTCTGC
GTGGACAGCCTGAAGGACGTGCGTCACACCTGTCCCAGCTGTGGGGCTCA
CCTGGGCACCTTCCGTAAAATCTAATCGTTGAGGCACAGGAGTAAAAAGA
AAAGATTTGTGATTAGGATCTTTATTACATACCAAAAATAACATGATTAT
AACTTTAAGCCAATGCTATAAGACGCATCTGCATAAGAGCCATTTAGGAA
GGACAGTAACCCTGAAGCTTCAATTTCCAATTCTAAATAAGACCGATTTT
CGCATTTTTTTTCCATCCAGGACTGCCAAACCAATATGCTATATTTTCAC
CATGTTTACCTTGAAATTCAAGGAAGATATACTCGTCGTTTTTGCTCCAT
TTCTTCCTTTTTTTCCGTTCAAAAAAAATAGGTTAATGACCTGGACCGGC
TGTCACCATGGTTAATGTTTAAAAATCAGTGGTGCTCAACTACATTATGT
AGCAAGCTTAAGTGACAGAGCTGGAGGAGCTAGTCAAGACCATGGAAAGG
TTAACATTATGAATTTGCCTGCAGATGTTAGGTCTCTAGTTCTATATTGT
ATCTGTCATTGTTAGTTTCCAATGTCACTTTCCAGTGGTGATGATGATAT
CAGCAGTTTGCAATACATGACGCTCACTACGATTGTGTCTTGTACCTTTT
CTTCAACGGTTGATTGATAAACATAGAAAGGACCTGTGCTGGGACATATG
TACCTGTATGTGAGACGATTGTAGACCAGAAGACAACCCCAATGGTGAAC
ATGTTAAGCAATGAATTCATTTTGTATGGGGTGTGCTGTGAACTGTATAT
GTATTTAAACGGGATTACATGTTTATAAGACTACCTGAAATGTACCATGT
ACAAAGTTTACATGAGCAGAAGATTGCTTTGAATGTCAATCGTGCTTATG
AATTGTTAGAACTTTAAGCTTCTAAGAACACAGGGATGTATGCCATTATG
ACACATATATCTTCAATAAGGCCGTTAAAACCATAAGACTAGTTATCGAA
TTCTGTTCAAGGTCATTATCGTGTAAATGAAGTCATAAAATAGTTACACA
TAGATGTTTATGTAATGAATGCATACGTCTAATTTTCGTAGTTTTCCCAT
GCATATAACGCTACCTCTTAAGCCTGGGTGGCTGATCAACACATAATAAA
TTGTGATATTTGATATCATTGATATTCATTCATGTACAAACGCTACCTGG
CCAACGACATTATTTAATATATATGAATATGATTCCTCAAGCGAATGCTG
TTTAGAGACTATCACATCACATGAAAACCGTTCAAAGGTCATTCTTGTTT
TGTACAGTAATGAGTTAGTAATGATGTACACAGAACCAGCCATTTCACAA
GTGGGAACAGCATTTTCCAAATTTGCGTAAGCTTTATTCTAATACAATTC
ATTTATGTAAGAACGGCATGAATAAATGTTTAACACATTTATCAACACAC
ATT Coding sequence (CDS) from alignment at Sc0000158:81509..86661- >transcript:BL96243_cuf4 ID=transcript:BL96243_cuf4|Name=transcript:BL96243_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=435bp|location=Sequence derived from alignment at Sc0000158:81509..86661- (Branchiostoma lanceolatum)
ATGGCAGACGGTAAGACACCGCTGATGCAGGGTGAGGAGACGGCGCCCAC
AGCCCCTCCTCCTGCCTACGATGATGCTGTATCTCATCCAAACATGGCTC
AACAACAAAACCAATATGGCGGCCAGTACGCACAGCCAGGCAGCACCGTG
TATTATGGAACCATCCCACAAAGTCCTCCAACAGTCGTTCTCTCTCCCCC
TCCCACCAATGCTGCGTGCCCAGTCCGCATACAGTGTACCAACTGTGGTC
AGCAAATCATCACCAAGTTAACATACATCACTGGGATGACAACATGGCTG
GCCTGTATGGCCATCTTTGTCTTTGGAGGATTTCTCGGCTGTTGTTTCAT
CCCGTTCTGCGTGGACAGCCTGAAGGACGTGCGTCACACCTGTCCCAGCT
GTGGGGCTCACCTGGGCACCTTCCGTAAAATCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000158 | genome | Sc0000158:81509..86661 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96243_cuf4 |
| Biotype | protein_coding |
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