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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96245_cuf3 >transcript:BL96245_cuf3-protein ID=transcript:BL96245_cuf3-protein|Name=transcript:BL96245_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=225bp
YSCVQGYTLLGSAAARCLGNHKWDSEAPICKVESRERLLNDKFIEGEYSP
SLSPTVGVVNITIAGSIVSIINLDESTETVTTAFRVGLTWYDQRLSWDVF
HYGVSKVRVDHDTVWKPTLKLLRSADKDFSGFPKSHLTMFNTGQVTWIIE
DIIVTTCDLDHFLFPFDTITCPVCLHTDVENDEELICSGNTTTADVYGCH
DPKTLKSGEWTATVNMTVADRRKEC Run BLAST on NCBI mRNA from alignment at Sc0000051:408438..412335+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96245_cuf3 ID=transcript:BL96245_cuf3|Name=transcript:BL96245_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3898bp|location=Sequence derived from alignment at Sc0000051:408438..412335+ (Branchiostoma lanceolatum)
GTACAGCTGCGTGCAGGGCTACACTCTGCTGGGCTCGGCGGCGGCAAGGT
GTCTGGGGAACCACAAGTGGGACTCGGAGGCACCGATATGCAAAGGTACT
CACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCA
CTCACTCACTCACACACTCACTCACACATACGCTCACTCACTCAATGACT
GACTCACACACTCACTCTCTCTCTCTCTCACTCACTCACTCACTCACTCA
CTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACAAGTGTTTG
GGCTGATGACACCAAAATTATCCTCTTCGAAATTTTCGGACAAAAACGCG
CCTGCAATTCCAGAGCTAGACAATAAGGGGCCCACTATTACATTCAATCA
AAAAAAAATACCATTCAATGGACGTTAGTACGAAATATAAACCCTTCTGG
TGTTATTGAACATTGAGTCTTACAAATAATACCTCCACTTACGTTAATGA
AGGTTAGCCATTCATGTAGTAAATACGCCAGTTGCTAGAGTAACTATTTT
CGGAATACCTCCACTTCTTAATTCCTGCAATCAAATCAAATTGCTTCAAT
GGCATCACAATGAACACGGCATTCAGATTGTTTGCAAGTCGCGGTGCTGT
GTTCATGTTTTGGAAGCCCGGAATACAGAAAACTCCTGCTGGGACAAAGA
TGTAGCTTAAACATGTATTCTAATGGTACCTCAACAGCGTTGGTTATATC
TACCTATGGCAATCACGTTTAATTTCGTCCTACTTGTGACCTATCAGTTA
TATCTAGTTAGGGGGGAGGATATGCGCTTTCTGGAAAACAAAACCTATTA
TCTATGATTTGATTCTTCTATTTTTTTGCCCACTTTTGTGTATATTATAT
TTATATGATTGTTTAATTATATTCCTTTCTCGTCCGATGGCGGCGTTGAT
ATAAGTTGTATTAACTTGAGTTCGTCGCCATCTTGTCTGTATTTGTTATC
TATGTTGTTTGATTTTTTTTTAAATCACGTTTTGTCCTCCAGTGGAGTCG
AGGGAACGGCTGTTGAACGACAAGTTCATCGAAGGCGAGTACTCTCCGAG
TCTCTCTCCGACGGTCGGAGTCGTCAACATCACCATCGCTGGCAGCATTG
TCAGCATCATCAACCTGGTGAGCTCAAATCAAATAGAATAGAATAAAGTG
GATGGAATAGAATAGAACAGAACAGAATGGAATAGAATACAATAGTATAG
AACAGAATAGAATAGAACAGAACAGAATAGAACGAATACCTTTTTTCAGT
ATTATATTGTTTGTAAACGCGAAATGTTTTCACCGGGTATGTAAATAATT
TTGCTTATGTCTTGTGGTTTCTTTTCTTTCTACATAGTCAATATGATTAT
TTTTCCCCATTCAGGACGAGTCAACAGAGACCGTCACCACAGCCTTCCGG
GTGGGCTTGGTAAGGCACACTTTTTTTTCTTCTTTGTGGTGTTTTGCTTC
CTTTCCTTGATAAAAAACGCCTTTGCAATGCTTGTACATTACGTGATTTC
GTGCCGTTGAGTTGAACTGAGAATATTTGAATGCCCAGCAGTCTAGCCCC
TTCCTAGGCTCAGAGAGGGATTTGTTGTGTAAGACAGACAATCACATAAA
TCAAATCAAACGTCTATGATCAATCTCTTAAACATGACCAATTACTTTAT
TTGTTTATTTGTTTGTTTGTGTGTTTATTTTCTTGTGTTAACAGACGTGG
TATGACCAGCGGCTGAGTTGGGACGTGTTCCATTACGGAGTCTCTAAAGT
TCGGGTTGACCACGACACTGTGTGGAAACCGACCCTCAAACTGCTACGGA
GGTGACCAAGGGCTCTCAATAATTTTTCTTCATATGTGCACTGGTGCAAT
CACCACTGAAAATCACAATCACTAGACAAGCTTTACCCACAAAACTCAGA
TTTTACGTAATATGTAGACCATGTCCTCACTATATAAACTCAAGAATTAG
ATGATCGTTGCAGTTTCTTTTCCAGTAATCATAAAATATTTTAACCACGA
AGATCAATGTGTTAATATGTTGATGTTATTAAGCCTTTTTTAAAAACCTG
TATGTGTTTCAGTGCTGACAAGGACTTCAGCGGGTTTCCGAAGTCGCACC
TGACCATGTTTAACACCGGCCAGGTCACATGGATAATCGGTAAGATGGGA
TTACAATATTGTCACCGAAGGTTATCATTGCATGACACAACAGTTACTTT
ATAGAAATGGCATCACTGGTGTTGATTGAGCATTGCTCATTACACACCGG
TTTACAAGCATGCCCTGTATAGAATAACATAAACAAAATAACATGAACAA
CAGGGGTATAATAGAAACTAATAGCCAAACAAAACCTAATTGATCTTGAT
TGTGGTTTTTTCAGAGGACATCATCGTGACGACCTGTGACCTGGACCACT
TCCTGTTCCCGTTCGACACCATCACGTGCCCGGTGTGCCTCCACACGGAC
GTGGAGAACGACGAGGAGCTGATCTGCTCGGGGAACACGACCACTGCCGA
CGTGTACGGCTGCCACGACCCCAAGACGCTCAAGAGCGGCGAGTGGACGG
CCACGGTCAACATGACGGTGGCAGACAGACGCAAAGTACGGTGAAGCAAT
TTTGGCATCTTGTAGCTTTGTTTTTATGGCAGAATCTAGAAGGCCTGGGT
TCGAATTCCCAGCGGGTCCCGATGGTGTGTCATTGGGAAAGGCACTTCAC
ACGATTTTTTTTTCAATTGTGGACCCCCCCTTCTTTCTTCCATCTCTAAA
CAACATCACTGCTCCGTGATGCTCATGAACTTCCCGTTTCTCCAGGCGTG
CTTGTCCATGTTGCTTGTGCGTGACCCGACGTTCCACATGTGCACCACGG
TGTCTCCGTCCATCGTGCTGGTGCTCCTCATGTGCATCACGTTCTTCATC
CCCATCGACAAGGGCGACCGCCTGTCCTGGGGCATGAGCATCCTGCTCTC
CATGTTCGTCTCTCTCGTCGTCATCAGCGACTACCTGCCGAAGACTGGGC
ACTTCCCGCTCTTTGGTAAGCTTGATGTTGGTTGATTGCACTGTTTCCGA
AACAGAACTTTCCTCTCTCTCTCTCACTCTCTCACACTGACTGACTGACT
GACTGACTGACTGACTGACTCACTCACTCACTCACTCACTTTTCACATAA
TCATTCAGACTCACTCATTCACTCACTCACTCATCCACTCACTCAGCGAC
TACCTACCGAAGACTGGGCATTTTCCGCTTTTTGGTAAGCGTGGATGTAG
ATTGAACTGTTTGCGAAAGAAATGATGAGAACTTTTCCTCACTCTCTCAC
ACTCACTCACTCTCTCACTCACTGACTTACTCTTTCACAGGCTCATTCAT
TCTCATTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCAC
TCACTCACTCAATCAGCGACTACCTGCCGAAGTCTGGACATTTTCCGCTC
TTTGGTAAGCTTGCTTCTAGATTGAGCTGCTTCAGAAACAAATTGACAAA
ATGGTAAGAACTTTCTCCCAGTGTTTCTCTTTCTATCTATCTATGTACGT
GTGCATGTATTTACGTTTGTTTACTTCTGACTTGTTTCAAGAACATCTTG
GCTTCAAATCAGCCATTGAAACAATCAACACCAAAAAATGAATACTACAG
CACATTAGCAATGAGCAACACATGTCTGCGGTATCACCTCGCCGGGGCTA
ATCCGCATACGATTACAATTACAAGCTGAATAATGATATTACCGTCATAG
TTCCCATCTCTGCCCGTGCAGGAGTGCTGACCATCGTCGCCATCACGTTG
GCGGGGCTGTTCATGTGGCTGACCACCGTGGTCATCGCGCTGTCCGGG Coding sequence (CDS) from alignment at Sc0000051:408438..412335+ >transcript:BL96245_cuf3 ID=transcript:BL96245_cuf3|Name=transcript:BL96245_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=678bp|location=Sequence derived from alignment at Sc0000051:408438..412335+ (Branchiostoma lanceolatum)
TACAGCTGCGTGCAGGGCTACACTCTGCTGGGCTCGGCGGCGGCAAGGTG
TCTGGGGAACCACAAGTGGGACTCGGAGGCACCGATATGCAAAGTGGAGT
CGAGGGAACGGCTGTTGAACGACAAGTTCATCGAAGGCGAGTACTCTCCG
AGTCTCTCTCCGACGGTCGGAGTCGTCAACATCACCATCGCTGGCAGCAT
TGTCAGCATCATCAACCTGGACGAGTCAACAGAGACCGTCACCACAGCCT
TCCGGGTGGGCTTGACGTGGTATGACCAGCGGCTGAGTTGGGACGTGTTC
CATTACGGAGTCTCTAAAGTTCGGGTTGACCACGACACTGTGTGGAAACC
GACCCTCAAACTGCTACGGAGTGCTGACAAGGACTTCAGCGGGTTTCCGA
AGTCGCACCTGACCATGTTTAACACCGGCCAGGTCACATGGATAATCGAG
GACATCATCGTGACGACCTGTGACCTGGACCACTTCCTGTTCCCGTTCGA
CACCATCACGTGCCCGGTGTGCCTCCACACGGACGTGGAGAACGACGAGG
AGCTGATCTGCTCGGGGAACACGACCACTGCCGACGTGTACGGCTGCCAC
GACCCCAAGACGCTCAAGAGCGGCGAGTGGACGGCCACGGTCAACATGAC
GGTGGCAGACAGACGCAAAGAGTGCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000051 | genome | Sc0000051:408438..412335 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96245_cuf3 |
| Biotype | protein_coding |
|
