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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96263_cuf0 >transcript:BL96263_cuf0-protein ID=transcript:BL96263_cuf0-protein|Name=transcript:BL96263_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=571bp
MAGLLLFVAVCVAWTGSSTGQQEYLATIGEWDFHKVPTVGPMTNANVKAA
CEEAGMWSPCSYTGHGACSHGRADCVAFDGGSASCRTLNAISDLLCGTVE
AHTCEPLDDTFVYSPGWQTDDSAFGLDYDTGHWGMTGANYTDKYALCASH
QEYLTTWDGWAFFKIRALGTMMNANIQATCERVGMSYPCWYTGHDPCHHT
YYYSDNCIKFDHAGVNCKTTTSLANKLCGTTSDYTCQALNYTFVYYPRHD
YSHGIRYNYGGQLNGDDYNDMYALCAARQCQISPCDHGTCVHGLKNYTCL
CDEDWTGEHCDKVIDSCASNPCVSGGTCTDEVGGYSCTCHPHTKGKNCET
VLHIDKCYHFSNDSLPYQEASAACNSMGGHLADIKDSGDQQLLASYIQLG
YDVSTWTSTSTSVSPFGLCDCTDNTPLSATAPWMQRSAKIDICVLLDSSV
GYMGTYQSCDEQHQYVCETNVTSCQPNVCQNGGICSSCFDGSSIFCTCPQ
GYTGTFCEKVNLCDPNPCPFDWACTSQDGGIHCAVPSTTRAISSGFCTAS
SCGSGWNCREDGPAGYSCIRG Run BLAST on NCBI mRNA from alignment at Sc0000098:593647..599532- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96263_cuf0 ID=transcript:BL96263_cuf0|Name=transcript:BL96263_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5886bp|location=Sequence derived from alignment at Sc0000098:593647..599532- (Branchiostoma lanceolatum)
ATTACAGATGACCTGATTACCAGTGACGCTGTTCTATAAATATAACACCC
ATCCCCCAGTCATGTGTGTGGTTCCCATGGCCTAGGGACGAGGTATAGGA
GTAAACATACACATACGGACGGATTACCGTACACGACACCATAGAAAGTC
GGACTCTAACCTGACCGGGGGCAAGGATGGCAGGGCTTCTTCTTTTTGTG
GCGGTTTGCGTCGCGTGGACGGGCTCTTCCACAGGTGGGTATGCTATATT
CGAAAAGATCGAACAAAAGACAAGATCCAACATATTCATAAAGCTTTGAA
TTGTAGAGAGAATGTACTCTAATCATGTTTTGGGTGGATTGAATATGATA
AAAGAATTCGAAATAAAGGTATAGACAGGCAGGTAAATAGCCTTTTTGAG
GCTGTAGGGGCAGTGGGCTGTCATCCACTGTGTCTAGTGCGCGATATTGG
AAGGCGGAGCCCACCCCTCTTCATCGCCGCCTTTTACCTCCACAACCGAA
GTCAGGTACGCATTTTCACACTTGAGTGGAGTGAGAAAAGTCGTGTTAAG
TGCCTTTCCCCAGTGCACAACATCGGTGGCATGTCGTGGGATTCGAGCCC
AGGACGTCTGGGTTCTGGGGGCAAACAGCCTAACCGTTACGTCAACACGA
CGCCACTAAAGGTTCCTGGCACCATTTATTTTTTAAAATGTGACTAGATA
CTAAATTATGATTTTTCTAAAATCTGACAGGCCAGCAAGAGTATCTGGCC
ACTATTGGCGAGTGGGACTTCCACAAAGTGCCCACTGTCGGCCCCATGAC
GAACGCCAACGTCAAGGCCGCGTGCGAGGAGGCGGGGATGTGGAGCCCCT
GCTCCTACACCGGCCACGGGGCGTGCAGCCACGGCAGGGCGGACTGTGTG
GCGTTTGACGGCGGCAGCGCGAGCTGTCGTACCCTGAACGCGATCTCGGA
CCTGCTGTGTGGGACCGTCGAGGCCCACACCTGCGAACCGCTCGACGACA
CCTTCGTGTACTCCCCCGGCTGGCAGACTGACGACAGCGCCTTCGGCCTT
GACTACGACACTGGCCACTGGGGAATGACAGGGGCAAACTACACCGACAA
GTACGCTCTGTGTGCAAGTAAGGATGACTGGTTATTCATACAAACATACG
AAATATACGCTTATGTGATGCAATAGCGTAACGTTAGTGGCATACATGTA
ACCATTTACAAAGCGTCAAGTTGAAGGAATTTTGTATATGTTTCACCAGC
AATGCCTACGATATTGGGTAACATGCAGAATATTTCTTGCATGATATCAA
GGAAATGTCTATGACTATGATACAACAGATGTTTTTTCTGCAAAGAACAG
AATTCACAATTTTGGTAAGAACCATTACTAATATGTGGAGGATTGCGTTG
ATTGATGTGTTACATACCGGTTATGCTAGGGTCACATTTTAAAGCGGGGC
CCGACCGGGTAGCTTGCGTGAACGAAAAATACGATATAAAAGAAAACACA
AAACGGAAAAATTCTCCTTACCATGATTGCGTTGATTGATATGTTAGATG
TTGTTTTGCCGGTGTTACGCGGAAGGGTGGCTATGCCGACACTCTCGGAA
AGTTCTAGAATCTAAGTTGTATTTTCCTCTTTACAAGGCCATCAAGAGTA
CCTGACAACCTGGGACGGGTGGGCCTTTTTTAAAATCCGTGCGTTAGGCA
CGATGATGAATGCCAACATCCAGGCCACGTGCGAGCGGGTAGGGATGAGC
TACCCCTGCTGGTACACCGGCCACGACCCGTGTCATCACACTTACTACTA
CAGCGACAACTGCATCAAGTTCGACCACGCCGGAGTCAACTGTAAAACTA
CAACATCTCTCGCCAACAAGCTGTGTGGGACCACGTCAGATTATACCTGT
CAGGCCCTGAACTACACGTTTGTGTACTACCCTCGGCACGACTACAGCCA
CGGGATCAGGTACAACTACGGCGGCCAACTGAACGGAGACGACTACAACG
ACATGTACGCCCTGTGTGCGGGTAAGGATTTCCCTGAATCAAATTTTCAT
CAACATAATCAACACAGAATACTTCTATTTTGCTATCATCTAAAACCTAT
AAAACCATAGCGTTTATTATACACAATGCTCGAATGCCTGGTATATTGCT
TACAATAAATAATTCATAATACCTGCCAATTTGAGCATATTCACAAACAT
ACATCGAATACGTTTCGTCGTAGCTGCTTGGTTCACCGTTGGCAATGAAG
ATAAGTAACCTTTGCAGCTGCTTGTTGACAGGTAGAAAACAGAATGACAC
TCTTAATTAAAATTGACTCCTTTCACAGCTCGGCAGTGCCAGATCTCCCC
ATGTGATCACGGGACCTGTGTACACGGACTGAAGAACTACACATGTCTGT
GTGACGAGGACTGGACGGGGGAACACTGTGATAAAGGTTGGTATATTTTC
AAAAGTTATCATAAACCATTACAAGTTATGTTTAGGTCCCAATCGGAAAA
AGTGGCCCTGCCTGGTAGTTCAGGGCTGTTTGGGGGCATTTTCGGGGGTG
ACTCCTACGGCTGTCGGGCTATTTTTGGGCCCGGCCGGGACCCCGAATCA
TTTTAATTTGGACACAAAATCAACGCGGGACCGGGTAACAAATGGACGCC
GTGAGTTAACTAACGATCGATGACTGAGGGACCGTACAGCGACCGAAATC
GGATTTGTGTGACCCTTGGTTTCATAACTGGAATATGGCGCATGGTTCTT
TTTCTGTGGAATAAGTCGAGCAAGCTGTCAATTTTTGTCGTTCAGCGGTC
GCAGCCCCCAGTAGAAAGGCAGTGTAAGATACACTGAACGACCCCTCGTC
TGTATTTCTTGGATGACCTGGATGTTGTAAAAGTGTTTCTTCATGTGACA
TGTCTGATTCCCTATAGTGATTGACAGCTGTGCCAGCAACCCGTGTGTGT
CAGGAGGGACGTGCACCGACGAGGTGGGCGGCTACAGTTGTACTTGTCAT
CCCCACACCAAGGGAAAGAACTGTGAAACAGGTATGATTTTCATAATACT
TACTAATAATAGATACATGTTAGAGACTAGAGAACATCTCAATGCAATAC
AGAGGACTTCACACAGTGGACAAAGTGACCACAATGTTAGCCCCCCGATA
ATGACTTACATAGCAACAAAGCTCTGTCTCTATGTCACCAACTGACTGAA
CATGCCGTTTACAGCAAAAGGCCAGATGGAATGTATTGTTTCGGCAAAGA
AAGAAAACACATGGCAGTGTGCAGTTTGACAAAATCCGTTCATTAGGCTG
TCAGTAACGGCATGTGGGACATGATTCCGCCTTTAAAGAGCAGCTATCAT
CAGTTGAAATGGTAAAACACCTCATATGCATGTAAGATGTAATGTAATAC
ATGTACACTAAATACAGCCATTCACCATCTTGCTTTGTCTCTGTCCCCTG
CAGTACTGCACATAGACAAGTGCTACCACTTCTCCAACGACAGTCTGCCC
TACCAGGAGGCGTCCGCTGCCTGTAACAGCATGGGCGGTCACCTGGCAGA
CATCAAGGACAGCGGTGACCAGCAGCTGCTCGCCAGCTACATACAGCTGG
GGTATGACGTCTCCACCTGGACCTCCACTAGCACCAGCGTCTCTCCGTTC
GGACTGTGTGACTGTACAGATAATACTCCTTTGTCGGGTAACCACGTGTT
TGTTTTCTCTTATACCATACCAATCAGCAATACCTCATTTGAGCCATGTT
TGTATTTGAGCTACGTAGACAAAGAGAGAAAAGCAAAATGGTGAAAGCAC
AACAAATTTTGGAATAAAGCCTAGTCCAATAAAAATATATGCAGTAGTTC
CTCTTACTCATTGACATTGACATGTACAATTCCAGGGATGAGTCATCCTC
GCTCTAGAGGAACCTTTTTTTGCCCATGTAGGGATGTCGTTATCCTTTTT
TGCCCATGTAGGGATGTCGTTGTCCTTTTTTGCCCATGTAGGGATGTCGT
TGTCCTTTTTTGCCCATGTAGGGATGTCGTTGTCGGTTAGACTAACGTTA
ACAGACAAAGGCTATTTACTGCAGCGCGCCTGGCTGTTGATGTTACGAAT
GTCAAAGATGCTCACAACTGTTTATTGACCATATATAGCGACTGCTCCCT
GGATGCAGAGGAGTGCCAAGATTGACATCTGTGTGCTGCTGGACAGCTCC
GTGGGGTACATGGGAACCTACCAGTCATGTGACGAACAACACCAGTACGT
CTGTGAAACTAGTGAGTACATAATACTCAATGCTTCCTGTGTAATGCTTT
GATGCCAATTGCGCCGGTGCCCGCAGGGGGTGTAGTCCCAGCAGGGTCCC
GAAGCTACAAATTTGTCCCGGTGGGCTTCCGGGTGCGGGTGGGGGGGGGG
GGGGGCTCCCGATACTCGCACGATTAGCTCATCGCGTCTATTTGTTACTG
GGTCCCGCGTTGAATTTAAGTCCGAGTCAAAGTCACCGCGGTGCCCGGCC
AGGCCTAGAAATAGCCCGGCAGTCGCAGGGTGTCCCACGAGGCCACGTAG
GGGGTCAGGCCCGAAAGTGCAAAAAGAAATCCCGTGAACTACCCGGTGGG
GCCCCTTTTCCCATTTGGGACCGAAGCAAAAGGACATGCTGGTTCAAGAC
ACAAGTCCAGTCATGTACATGATTTCTGACGCCATACATGTTTCAGCCAT
TAATAAGACAACATACTGTCTTATTATTGGACGTGGATTTAAGTGAACAT
CTCACCTTGTGCGTTACTGCAGAACTATAGCCTATAATTGTACAGTTACT
TGGGCCTTACATTTCTCAGATGTGACGTCATGTCAGCCGAACGTGTGTCA
GAACGGCGGAATCTGCAGTTCGTGTTTTGATGGTTCCAGCATCTTCTGTA
CCTGTCCGCAAGGGTACACGGGAACCTTCTGTGAAAAAGGCAAGAGTATT
TTTGTTTCATCAACTCCAAAGTCTATACATTGTCTAGCTGTTATCTTTAT
TTTAAATCAGTCAGTATAACAGTGTATGATGTATGTACATATGTATGTTG
GAACAGACGTATTGTGTAGATATTAGATTTTATACCACGGATTACATTTA
ATCAGCTTTATTTATTCTGCTAATAGCAAGGTTGCCTTCTAGAAATAGGA
TACTGTCTCACTATTCATATCTTGTATCTTGCATTCCAGTCAACCTGTGC
GACCCGAACCCCTGTCCGTTTGACTGGGCCTGCACGAGCCAAGATGGCGG
TATCCACTGTGCAGGTAGGGAACATTCCGTTGCGGTGTCTTTCTTTGATT
ATCTACCTGAAAAATGAATTTGTAGTTTTGGATGTGTCTCTCTATGTCGA
ATGTCTATTTCGGGCCTCCTGCTATGTGACCCTGTTACTGCAAATGAACT
TCCGTTTTGTCTATCGTTTGACCTGGACGTGCTATGGTGTTGATTTTTTA
CGTGTTCTTTATTCAACATTTACCTATCTTTCCTGTCTTGACCAGATATA
TCGGCTGTTACTACTCTGCCTATATGCAGTTTCACCGGTTTTTTTAAGTA
ATGAAATTAAATCTAAGTGGTGCAAATAATCTGTACAGAATTATTAAATT
GATCGTTCTCACGTATTCTTGCAGTGCCATCTACGACAAGGGCCATCAGC
TCTGGCTTCTGCACAGCGTCCTCCTGCGGTTCCGGTTGGAACTGCAGGGA
AGATGGCCCAGCTGGGTACTCCTGCATCCGTGGCTGATATGATATTATCA
TTCATCATCACAGAATTTCACCTCCAGCAAACAAAGCAACGTCCTTGACA
TATCGTACCTTGAGCAGCTTGAAACCATGATTTAACAACGCAAATTCCTG
ATACAACACGCAGCAATGTAACACAGAAGCACCTTT Coding sequence (CDS) from alignment at Sc0000098:593647..599532- >transcript:BL96263_cuf0 ID=transcript:BL96263_cuf0|Name=transcript:BL96263_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1716bp|location=Sequence derived from alignment at Sc0000098:593647..599532- (Branchiostoma lanceolatum)
ATGGCAGGGCTTCTTCTTTTTGTGGCGGTTTGCGTCGCGTGGACGGGCTC
TTCCACAGGCCAGCAAGAGTATCTGGCCACTATTGGCGAGTGGGACTTCC
ACAAAGTGCCCACTGTCGGCCCCATGACGAACGCCAACGTCAAGGCCGCG
TGCGAGGAGGCGGGGATGTGGAGCCCCTGCTCCTACACCGGCCACGGGGC
GTGCAGCCACGGCAGGGCGGACTGTGTGGCGTTTGACGGCGGCAGCGCGA
GCTGTCGTACCCTGAACGCGATCTCGGACCTGCTGTGTGGGACCGTCGAG
GCCCACACCTGCGAACCGCTCGACGACACCTTCGTGTACTCCCCCGGCTG
GCAGACTGACGACAGCGCCTTCGGCCTTGACTACGACACTGGCCACTGGG
GAATGACAGGGGCAAACTACACCGACAAGTACGCTCTGTGTGCAAGCCAT
CAAGAGTACCTGACAACCTGGGACGGGTGGGCCTTTTTTAAAATCCGTGC
GTTAGGCACGATGATGAATGCCAACATCCAGGCCACGTGCGAGCGGGTAG
GGATGAGCTACCCCTGCTGGTACACCGGCCACGACCCGTGTCATCACACT
TACTACTACAGCGACAACTGCATCAAGTTCGACCACGCCGGAGTCAACTG
TAAAACTACAACATCTCTCGCCAACAAGCTGTGTGGGACCACGTCAGATT
ATACCTGTCAGGCCCTGAACTACACGTTTGTGTACTACCCTCGGCACGAC
TACAGCCACGGGATCAGGTACAACTACGGCGGCCAACTGAACGGAGACGA
CTACAACGACATGTACGCCCTGTGTGCGGCTCGGCAGTGCCAGATCTCCC
CATGTGATCACGGGACCTGTGTACACGGACTGAAGAACTACACATGTCTG
TGTGACGAGGACTGGACGGGGGAACACTGTGATAAAGTGATTGACAGCTG
TGCCAGCAACCCGTGTGTGTCAGGAGGGACGTGCACCGACGAGGTGGGCG
GCTACAGTTGTACTTGTCATCCCCACACCAAGGGAAAGAACTGTGAAACA
GTACTGCACATAGACAAGTGCTACCACTTCTCCAACGACAGTCTGCCCTA
CCAGGAGGCGTCCGCTGCCTGTAACAGCATGGGCGGTCACCTGGCAGACA
TCAAGGACAGCGGTGACCAGCAGCTGCTCGCCAGCTACATACAGCTGGGG
TATGACGTCTCCACCTGGACCTCCACTAGCACCAGCGTCTCTCCGTTCGG
ACTGTGTGACTGTACAGATAATACTCCTTTGTCGGCGACTGCTCCCTGGA
TGCAGAGGAGTGCCAAGATTGACATCTGTGTGCTGCTGGACAGCTCCGTG
GGGTACATGGGAACCTACCAGTCATGTGACGAACAACACCAGTACGTCTG
TGAAACTAATGTGACGTCATGTCAGCCGAACGTGTGTCAGAACGGCGGAA
TCTGCAGTTCGTGTTTTGATGGTTCCAGCATCTTCTGTACCTGTCCGCAA
GGGTACACGGGAACCTTCTGTGAAAAAGTCAACCTGTGCGACCCGAACCC
CTGTCCGTTTGACTGGGCCTGCACGAGCCAAGATGGCGGTATCCACTGTG
CAGTGCCATCTACGACAAGGGCCATCAGCTCTGGCTTCTGCACAGCGTCC
TCCTGCGGTTCCGGTTGGAACTGCAGGGAAGATGGCCCAGCTGGGTACTC
CTGCATCCGTGGCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000098 | genome | Sc0000098:593647..599532 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96263_cuf0 |
| Biotype | protein_coding |
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