transcript:BL96271_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96271_cuf3
Unique Nametranscript:BL96271_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96271_cuf3

>transcript:BL96271_cuf3-protein ID=transcript:BL96271_cuf3-protein|Name=transcript:BL96271_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=115bp
DQYAPPEAFTKSVTEALTCSFDIYSYGILSWEVITCEQAWKGQSPCLFVC
LFVCLFVCITYHQGVTHQVCTEDYKLHIRTDFYMIHTHREGPLLFSISVL
GSFTCLGCGSHGTSI
Run BLAST on NCBI

mRNA from alignment at Sc0000136:739436..740430-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96271_cuf3 ID=transcript:BL96271_cuf3|Name=transcript:BL96271_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=995bp|location=Sequence derived from alignment at Sc0000136:739436..740430- (Branchiostoma lanceolatum)
CTGACCAGTACGCTCCACCGGAAGCCTTCACGAAGTCTGTGACCGAGGCT
CTGACTTGCAGCTTTGATATCTACAGGTGAAAGACAATATCATGGCGCTC
TGAACATTCATGTGTTACAAAGATTTAACAAATCAACACAATATGCTATT
AGTTAAATATTCTACTGCCAGTCGATGTCAAAATCGATGGATTGATGGAT
TAATTGATTGATTGATTAATTAATTGATTGATTGATAAAGTGGTTTTTAG
GAGCTCAGTTAGTTAACATCCAGTGATGACATATTAGTTTTGCCCTGATA
GTTACGGCATCCTGTCCTGGGAGGTGATCACCTGCGAGCAGGCATGGAAA
GGTCAGTCCCCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG
TATTACATACCATCAGGGCGTAACACACCAAGTTTGTACTGAAGATTACA
AGCTGCATATCCGGACAGATTTTTATATGATCCACACACACCGGGAAGGA
CCCCTACTCTTTTCGATAAGTGTGTTAGGTTCTTTTACGTGCTTGGGGTG
TGGCTCTCATGGGACCTCCATTTAACGTCCTATCCTAGGGACGTCCTTAA
CCTAAACTAGGTACTCATTTTCACCTGAGTAAAGTGGGGAAAGTCGTGTT
AAGTGCCTCTCCCAAGGACAAATCAGGGAACCCCGGATTCGAACCCGGTA
TACTCTGGGTTCTGGTGCCAAACACCCTACCACTACGCCACCGCGACGCC
ACTGTTCTCAACCACTGCATGTTGGTTGGCCAATAAAACTCCTACCGCGC
AATCCTTATTATCATATATGGTAAGTAAGACGTACGTCAATTTCGACCGC
AAGGGACAACTCCAGACGGTAACTTGAAGTGCAAACCGAGCACAGCTTTA
ATCAGTGAACCTAACTCGAGGAACAAAGATGGCGGACAAGATGGCAAACC
CACGAGGCAGGTTACCTTTAATGTCAAGGGATCATGACCTATTAC

Coding sequence (CDS) from alignment at Sc0000136:739436..740430-

>transcript:BL96271_cuf3 ID=transcript:BL96271_cuf3|Name=transcript:BL96271_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=348bp|location=Sequence derived from alignment at Sc0000136:739436..740430- (Branchiostoma lanceolatum)
GACCAGTACGCTCCACCGGAAGCCTTCACGAAGTCTGTGACCGAGGCTCT
GACTTGCAGCTTTGATATCTACAGTTACGGCATCCTGTCCTGGGAGGTGA
TCACCTGCGAGCAGGCATGGAAAGGTCAGTCCCCTTGTTTGTTTGTTTGT
TTGTTTGTTTGTTTGTTTGTTTGTATTACATACCATCAGGGCGTAACACA
CCAAGTTTGTACTGAAGATTACAAGCTGCATATCCGGACAGATTTTTATA
TGATCCACACACACCGGGAAGGACCCCTACTCTTTTCGATAAGTGTGTTA
GGTTCTTTTACGTGCTTGGGGTGTGGCTCTCATGGGACCTCCATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96271gene:BL96271Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96271_cuf3-E1BL96271_cuf3-E1-1564476830-337619Branchiostoma lanceolatumexon
BL96271_cuf3-E2BL96271_cuf3-E2-1564476830-337616Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96271_cuf3transcript:BL96271_cuf3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000136genomeSc0000136:739436..740430 -
Properties
Property NameValue
Transcript idBL96271_cuf3
Biotypeprotein_coding