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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96272_cuf0 >transcript:BL96272_cuf0-protein ID=transcript:BL96272_cuf0-protein|Name=transcript:BL96272_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=216bp
SSDQLHFGLSVDSPLNDLELFTLHCVATPSTDPADSPSVSIIQDGCDIDP
TLQLDSARSNDMASYYSIQSFTFPDNDDPSLVYIHCTMVVCFKTDPDSRC
SQGCVPASRRRRAASDGSEVRVRRASERDQTTTISQGPFHVENGQKEASP
LPTVGIAVGMAAGIAGVLLLVAAVFLLRNRRRRDAKEQGEGRVGFDNYSF
ELWGKNKAANAAPKPE Run BLAST on NCBI mRNA from alignment at xfSc0000015:12418..17273- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96272_cuf0 ID=transcript:BL96272_cuf0|Name=transcript:BL96272_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4856bp|location=Sequence derived from alignment at xfSc0000015:12418..17273- (Branchiostoma lanceolatum)
TCATCTGACCAGCTGCACTTCGGCCTGAGCGTGGACTCCCCTCTGAACGA
CCTGGAGCTGTTCACTCTCCACTGCGTCGCCACGCCGAGCACCGACCCCG
CAGACTCCCCCAGCGTCAGCATCATTCAGGACGGGTACGTCTGTTTGTTT
GTTTGTTTGTTTGTTTGTTTTGACAGGGGGCTGCCAACTGGTGCTTTTCA
ATGTCCCCAAACAAACGTATTTTACACAAAACTCAATCGAAGTTACAAAA
GAAAACAAAAAAGCTACGCAAACTACTAATTGATGCAAAGCCAAAGTAAC
TTGACCCACGTCACTTTTCACATGATTTCTTAGATTAGAGGTTCCAAATT
TGTTACTTCAGAGGTGACAATTTGTTAAAAGTTAGGGACAGCCTTAAAGT
GTTTAACTCACATGTTCTCAATTCAAAACCACAATCTCCACACTTGTATA
TTGGGCCAAAGTGTTAAACTCACATGTTCTCAATTCAAAACCACAATCGC
CACAATTATATATTTGGCCAGTACCATATCATCATCTGTGGCATTCACGA
TCACTCGTCTCCTGTAGGTGCGACATCGACCCGACGCTTCAGCTGGACTC
TGCGCGGTCTAACGACATGGCCTCGTACTACTCCATCCAATCATTCACCT
TCCCCGACAATGACGATCCCAGCCTGGTACAATAGTCAGTCACTGGTCTG
GTGGTGGGCAGGGCTAGCTGTCGGCTTAGCATGATATCCGCGATGTGAGG
TGGTGATATCGCAGATGTAAAGCTTGTCCTTGACAGTATGCTGCAAAACG
CATTGTGTGATGGTCTTTTGATTGTCATAAGGTTTGACTCCTCAAGGCCA
GCAGAAAGTGGTTTGGGTTTAGCTTGCATCTGAAAGGCTTAGAAGCTTTT
GGCTGTCAGGGTGCATGGATGGTCTTTCATGGACCTCATCTGAGGTTCAG
CGGCCATTTAGGTGCTCTACATCTCTCTGGACGTCAGTAGCCGCCATGCA
TCAGACACTGATGCCTGCGAATGATTGATTGATTGACATCTCTCTGGAAG
TTTTTTTTCTACTTGAATCGTCTTGACCACTTCATGGCATTCGGGATACC
TTGAATACAAGCCTGGAGTCCAGCCTTGTTAGATCTTGTTAGCTTTGGCC
CCCTAGCAGCTAGCAGCATTGGGAGCAGGCCAAAGCTAACAAGGCTGGAC
TCCAGACTACTTAAACGCCAGGTGGTGTGCCAGGTTTTTATACTAACAGG
CCAAAGCTAGCAAGGCTGGACTCCAGGCTACTTAACGCCGGGTGGTGCGC
CAGTTTCATACTAACAGATGTTGTCCTTACCCTCACCCCAGGTTTACATC
CACTGCACCATGGTGGTCTGCTTCAAAACCGACCCGGACTCGCGGTGCAG
CCAGGGATGCGTCCCCGCCAGCCGGCGCAGGCGCGCTGCGTCTGACGGGA
GCGAGGTCCGGGTGCGACGTGCGAGCGAAAGGGACCAGACAACGACCATA
AGCCAAGGACCCTTCCATGTTGAGAATGGACAAAAAGAAGGTAGCTAAAT
ATCAAGAAGGCTACTCTAAATATCAGTTACTCTTATGGACGTCAACAAAC
CGGGTGTTCTGTTACGCTTCTGAGTTTGTAACCAGTTGTTTTTCATGATT
CTCTTTTAATATATAGAAGCAACAATACATCATATCACAGCCATCATAGT
CGTGCTAGAGGCCATTACCTTTTATTGCATTTAATCAAACTTAAAACTAG
ACTATAAAAAGAACTGTATTGGATAATCTTTTGCAAAGACCTGTTGCATA
TTATCATTTGCAATATGATCAGCAACTTGAGTTCATAATTGTGCTGGCAG
ATACTAAATTTACAATTCTGCATGCACAGATACTGCACTCTCATGTACAG
GCAGTCAGGGAAGTACTTATGTATGAACAGTATGAACCTTATGTCTCTGT
GTGGTCCCCAGCCTCCCCCCTCCCCACAGTCGGCATCGCTGTCGGGATGG
CTGCGGGGATCGCGGGGGTCCTGCTGCTGGTCGCTGCCGTCTTCCTGCTG
AGGAACAGACGCCGCCGTGACGCCAAGGAGCAGGGCGAGGGTCGTGTCGG
TCAGTATTAGATATTTGTGACCGTACAGAATGTGTCTTTAGATACTTTCT
TAAAGAATCCTTGTTCATTCAGCAAATCTGCAAAAAAGCTAGCCAAGCTT
AGATTGCATCTATATACTAGTATATTGTTTTGCTTGTGATTTTTAGGGCC
TAAGTCTATGAAATACATGTAATGTTTTGCTACATGTTCTGTAAATGTTT
TATGTGTGGGTCATGTCACCAGCAATGGCTGCTTGTGTCCCTCGTGTATT
GACTTGTTGAAATTCCAATCAAATCACATCAAATCAAGCTTTTACTGCCT
ACGGTTGATGTTGATTGTCCCCACGGCATCATTTAGCGACAGATCAGATC
AGACCCTTTGATCAAACACTAACTACCCATTCTATATATATTCTAACAGT
ATTTGTAATGAGCATTTGGTCCTTCCCCCCATATTCTGGTACTTTTCTCT
TACCTGATGTGGTTTTTATTTCAGGCTTTGACAACTATTCGTTTGAGCTC
TGGGGAAAGAACAAGGCTGCCAACGCCGCCCCGAAACCCGAGTAGTTGTT
TCCGGAGTGAGGCTCAACATTCCAGCATGAGCGATGTTCTTAGTAGGTAG
CAGAACAAAGATATCTCTTTCTCCCTCCTCTCTCTCTCTCTCTCTCTCTT
TCTATTTCTAAATCTCTCTTAATCTATCTCAATCTCCCTCTTAATCTTTC
TCGATCTCTCTCCATCCTTCTCAATCTCTCCTTCCCTTAATTTCTCTCCC
TCTTTCTCAATCTCTCGCAATCTCTCCCTCTTTCTCAATCTCTCTCTCCC
TTTCTCAATCTCCTCATATGTACACACAAGCGCACACACACACACACACA
TACACACACACACACACACACACACACACACATACACACACACACACACA
CACACACACACACACACAGACGCATACTCTCTCCCTCACTTGTTCTTGAT
GCTCACCATGTCTCTTTCTTTATCGTTCTTCCGTTTCATTCTTGAGAACT
TCAAGCTATTCTTCACTCTCTTAGCTCTCTTGAGTATCATATAGTCCATA
ATCACATATATGCATATATAACCATGTTACAGCTTACATATGAAAGCTGA
CAACAGTTAGAACCTAGGGCAGTTTGGATGGGCAATCAATTAATAAAACC
TGGCAGATTTTGTTCGCATTAAGACTAAATTGAGGAAAATCCTACAAAAC
ACAGCATGGCTAAGTAATGTCATAAATTGGGCAAATTTCAGATTTTTCAA
AGGATCAAACATATAAAAGTTTCTTCTGTGACTAAAAAAGTATGTTATAT
TTCAATTCTGGACGCCAAAAGACAACATGTTAACACAACCACAGTTTAGA
AAAGTGCAAACGGACGTTTGTTAGAACTTCGAGGTAGAAAACTGTTGTCA
GCTGAAACAAAAAAATGCCGGTTTAGGGAGCTTCCGGTACCATTCCTGCC
CCCACAGTGTGACAAACATGACGGCCAACATGTTAACTGTTATAGAGACT
AAACTAACATGTTAACCTGTTAGAGAAAAAACCCAACATGTTTAACTGTT
AGAGACAAAACCAACATGTTTAACTGTTAGAGACAAAACCAACATGTTTA
ACTGTTAGAGACAAAACCAACATGTTTAACTGTTAGAGACAAAACCAACA
TGTTTAACTGTTAGAGACAAAACCAACATGTTTAACTGTTAGAGACAAAA
CCAACATGTTTAACTGTTAGAGACAAAACCAACATGTTTAACTGTTAGAG
ACAAAACCAACATGTTTAACTGTTAGAGACAAAACCAACATGTTTAACTG
TTAGAGACAAAACCAACATGTTTAACTGTTAGAGACAAAACCAACATGTT
TAACTGTTAGAGACAAAACCAACATGTTTAACCTGTTAGAGACAAAACCT
CAGAGTTCTGTGAAGACGACCTGGAAAGGCTGATCAGGCATTTGTGTTTG
ACATGGTGGCCGTCATATTTGCAATTTACAACCGTCAGATTCAGAAGCAG
TTGAGATGAAAATGGAGAAGGTTGAAAATGGCCGAAGGGCAGTGAGGCTG
GTTGTGAAACATTGTGGAATAGTGGGGTGTTAATTAAAATCTTCTTAACA
TGTATTCAAGTTGCTAGCAAGCCTAATATATAGTATATAATCATATGTTA
ACATTGAACTTTTCATAGATAGGTGGAATATTGTGCTGAACTAAGGTTCT
AAATGTAGGTTTCTAGTGTATTATCGTAAACTGTACTTAACTCTAGTGCT
CAGACACAAGCGATTATCGCTGCCGATTTAATGTACTAAATAAATATAAC
TTTTATCTTGCAGTAGAATTTCTATTAGACATTGCCGATATATATACTGA
GGTTATAAGGTCAGCATTCATATTGTTATCATAATAGTTAATAATATACC
ATGGTGTTAGAAACGTGATTCCGCTTTAGTGAGGTGTAAACACAGCTTTA
CTGTAGAGAGAGAATCAGGTGTCTTACTTGTAACCAACAATGTGCGCGGT
GCTGCATTTCTATAGCGAACATAATCTAGAGTCTGGTGTGCAGACTGAGG
TGCTGCGGAATTTTGTTAGGTGTTGTGAGATTAACACAGATTTCTATATG
TGAAGACAGAGAAGCGTCACCAACATGTATCAAACCAGGGAAGTGATATC
CTAATTAACTCACCACTAGAACTGATCGCTTAGTTTTATATATTGTTAAT
GTGCATTTTGGTGCTTTGGAAGCTTTTTTACTTAAATAGATGTGCAGTTT
GGTACC Coding sequence (CDS) from alignment at xfSc0000015:12418..17273- >transcript:BL96272_cuf0 ID=transcript:BL96272_cuf0|Name=transcript:BL96272_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=651bp|location=Sequence derived from alignment at xfSc0000015:12418..17273- (Branchiostoma lanceolatum)
TCATCTGACCAGCTGCACTTCGGCCTGAGCGTGGACTCCCCTCTGAACGA
CCTGGAGCTGTTCACTCTCCACTGCGTCGCCACGCCGAGCACCGACCCCG
CAGACTCCCCCAGCGTCAGCATCATTCAGGACGGGTGCGACATCGACCCG
ACGCTTCAGCTGGACTCTGCGCGGTCTAACGACATGGCCTCGTACTACTC
CATCCAATCATTCACCTTCCCCGACAATGACGATCCCAGCCTGGTTTACA
TCCACTGCACCATGGTGGTCTGCTTCAAAACCGACCCGGACTCGCGGTGC
AGCCAGGGATGCGTCCCCGCCAGCCGGCGCAGGCGCGCTGCGTCTGACGG
GAGCGAGGTCCGGGTGCGACGTGCGAGCGAAAGGGACCAGACAACGACCA
TAAGCCAAGGACCCTTCCATGTTGAGAATGGACAAAAAGAAGCCTCCCCC
CTCCCCACAGTCGGCATCGCTGTCGGGATGGCTGCGGGGATCGCGGGGGT
CCTGCTGCTGGTCGCTGCCGTCTTCCTGCTGAGGAACAGACGCCGCCGTG
ACGCCAAGGAGCAGGGCGAGGGTCGTGTCGGCTTTGACAACTATTCGTTT
GAGCTCTGGGGAAAGAACAAGGCTGCCAACGCCGCCCCGAAACCCGAGTA
G
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xfSc0000015 | genome | xfSc0000015:12418..17273 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96272_cuf0 |
| Biotype | protein_coding |
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