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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96274_cuf3 >transcript:BL96274_cuf3-protein ID=transcript:BL96274_cuf3-protein|Name=transcript:BL96274_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=135bp
INIVSAMWGRTTREHCPDGPILTTDCPSDPGTLAVARSICQWKSSCSVSA
TRDVLGDPCHNTHKYLEVEFTCRSGETTRQSWTTDVPTTGAETTRPWWWS
WTTDAPTTALSDLVFTEVGTDYLAVSWRAPVDLNI Run BLAST on NCBI mRNA from alignment at xfSc0000015:19673..22840- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96274_cuf3 ID=transcript:BL96274_cuf3|Name=transcript:BL96274_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3168bp|location=Sequence derived from alignment at xfSc0000015:19673..22840- (Branchiostoma lanceolatum)
NNATCAACATCGTGTCCGCGATGTGGGGCCGGACCACTCGGGAGCATTGC
CCCGATGGTCCGATCCTCACCACGGACTGCCCCTCTGACCCCGGCACCCT
GGCTGTGGCCAGGAGCATCTGCCAGTGGAAGTCCAGCTGCTCGGTGTCGG
CCACCCGAGACGTGTTGGGGGATCCTTGTCATAACACGCACAAGTACCTG
GAAGTCGAGTTCACCTGCAGATGTAAATACCTATGTTGCACTTGACATTA
GGTTTGGTAGGATGCAAAACTTGACCAATTCCTGTTGAAGTTGGTTGAAA
CGTTTCCAGCGTAAGGGGGAATTTATATCTAAATTAATGCTTCAGTATTT
ATATGACTAAAATTTACTGATAAAAGGAACTTTTCATGTACTATGAAACA
TCGCTGCATGATGGGAAGGCAGGTGGGTGGGTGTTCGGAAACATTGCATG
ATGGGAAGGCAGGCGGGTGTTCGGAAACATTGCATGATGGGATGGCAGGT
GGGTGTGGGTTAGGAAACACTGCATGATGGGAAGGCAGGTGGGTGTGGGT
AATGAAACACTGCATGATGGGAAGGCATGTGGGTTGTAGGAAACACTGCT
TAACCGTAAGCATATATACAATGTTCTAAGGACGTTTACGATATCCCAAT
GGTAGCATGCCACGATTTCCTACAATCATCATCATCATCCACTGGTTTCT
GCATCTGCAGTCATAGAAACGTCTTGCAGATTTTTTAGTCTTTCTTCATC
TTTATCCATTTTGCCTTGCATCCGGCGAGCTACCTTAGAGTTTCTTTTCC
GTTTGGGGGGGGTGCTCTCGCCCTATTTGCTTCAGAACTCCATTCAGCAT
GGTGAGAAGATGGCCAGTGTGTTCCTTTGCGTGCTAGGTATCGGTTGGAA
CGTAATATTGAAAATTTTAATTACAGTTTCCACACTATCTTAGCAACATT
GAACTAAATCTGTATGACCGATATGATAGCGCAATGAAACAACGTAACGT
CAATCCACCGTACGGTACATTGACAGGGCTGTGGTATTCAGACTGTAAAT
GTACCATAAGGTAGCCCCATAGTCCTGGTCTGTGGGGCATTCGTGCTGGA
TGGGTTGGAAAGGGTTTTGGTATACGTACAGTACGGTGCACTAAAATTAC
ATTGTTTCGTTTCTGGGAAAACCAGAACTGATGCCAGCGTGCGAATAAAA
AAGCTGCCTTCAGTACGACATCTTCATGGTCAGGAAAGGTGACCAAATGA
CTAAACACACGATAGTTTAAGAGAAAGATTTGATGCCATAACTTGTTAAC
GTTATGGGGTCCTCTTTCTGACAGGAGTGGAGCAGCGTCGAGTTTGCGGT
CAACAAGCAATGTCCATCCAGTGTCCTGCCGGACAACATATCAACATCGT
GTCCGCGATGTGGGGCCGGACCANGGGGGGGGGGGTGCTCTCGCCCTATT
TGCTTCAGAACTCCATTCAGCATGGTGAGAAGATGGCCAGTGTGTTCCTT
TGCGTGCTATGTATCGGTTGGAACGTAATATCGAAAATTTTAATTACAGT
TTCCACACTATCTTAGCAACATTGAACTAAATCTGTATGACCGATATGAT
AGCGCAATGAAACAACGTAACGTCAATCCACCGTACGGTACATTGACAGG
GCTGTGGTATTCAGACTGTAAATGTACCATAAGGTAGCCCCATAGTCCTG
GTCTGTGGGGCATTCGTGCTGGATGGGTTGGAAAGGGTTTTGGTATACGT
ACAGTACGGTGCACTAAAATTACATTGTTTCGTTTCTGGGAAAACCAGAA
CTGATGCCAGCGTGCGAATAAAAAAGCTGCCTTCAGTACGACATCTTCAT
GGTCAGGAAAGGTGACCAAATGACTAAACACACGATAGTTTAAGAGAAAG
ATTTGATGCCATAACTTGTTAACGTTATGGGGTCCTCTTTCTGGCAGAAG
CGGAGCAGCGTCGAGTTTGCGGTCAACAAACAATGTCCATCCAGTGTCCT
GCCGGACAACTCGGGAGCNCATTAGGTTTGGTAGGATGCAAAACTTGACC
AATTCCTGTTGAAGTTGGTTGAAACGTTTCCAGCGTAAGGGGAAATTATG
GAATTTATATCTAAACTNTCTCTTATTACATTCCATCAGTTTCTGCTTCT
TCTTGGTCATTACGGTCAATTAATGTGACACTAATGTTAATCCCCTCTCC
TCCAGCTGGAGAAACCACGCGCCAATCGTGGACTACGGATGTACCAACCA
CAGGTGAGAACTTTCTCACTGTTACATTGATGCACCTTCTTCAGGTAAAA
AAGTGTACTTTTTACTTACTTCATGTAAGCTAGAAATGATTGAATGTTCA
CCCCCCCCCCCTTAGGTGCAGAAACCACGCGCCCATGGTGGTGGTCCTGG
ACTACTGATGCACCAACCACAGGTGAGAACAAACTTCCTCACCTGTTCCC
GTTACACTGGGACAACTCCAGGTGATCCTCACCTGTTCCCCTGTTACACT
GGGACATCTTCCTTCCTTAATATAAGGCGTAACCACTACGCTTCAGCTAT
TTGCGTAACTGCTTCGATTCTATCTCCCCAACATATAGAAAACCTGAGTG
TCTAAACTTTTTTTCTGCACTAACACAGTCAGCTCCTTCACTTGGAGTTC
GGGTGAGGTGTTTGTAGGCATACCCGCCATAACAGAGATGAACATAATCG
ACTAAAAGCAGAATGAACACAGGGTGGCGTAAATGGATGAATATATATAT
ACTAAAACAGTCGACGGGTTCAACTGTACCTGTAACGATGGCTACAGCGG
GGATGGAGTAACCTTTACAGGTATAGAATGCCGCTTTACTTTGTCCTTTA
TCACATGTACAAAACCATGTATACACGAGTCCATTTGCATGAAATATACA
TATCAGATAAAACAGGTAGCAAAACATCCTAGGTCCACAGAGATCAACAA
AATAGACTGTGATTCATGAACTAAGATGAACTTTGAAACTTATATTCTCA
GCACTTTCACAAAGAAGTTAAAATGAGTTGCTAGCAGTCACAAATCGTGC
GAGTAAAGAGGCTACTACTGTGTAATCCCCTTACAGCTCTGTCCGACCTG
GTCTTCACCGAAGTCGGGACGGACTACCTGGCCGTGTCCTGGAGGGCGCC
CGTCGACCTGAACATAAC Coding sequence (CDS) from alignment at xfSc0000015:19673..22840- >transcript:BL96274_cuf3 ID=transcript:BL96274_cuf3|Name=transcript:BL96274_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1620bp|location=Sequence derived from alignment at xfSc0000015:19673..22840- (Branchiostoma lanceolatum)
ATCAACATCGTGTCCGCGATGTGGGGCCGGACCACTCGGGAGCATTGCCC
CGATGGTCCGATCCTCACCACGGACTGCCCCTCTGACCCCGGCACCCTGG
CTGTGGCCAGGAGCATCTGCCAGTGGAAGTCCAGCTGCTCGGTGTCGGCC
ACCCGAGACGTGTTGGGGGATCCTTGTCATAACACGCACAAGTACCTGGA
AGTCGAGTTCACCTGCAGATCTGGAGAAACCACGCGCCAATCGTGGACTA
CGGATGTACCAACCACAGGTGCAGAAACCACGCGCCCATGGTGGTGGTCC
TGGACTACTGATGCACCAACCACAGCTCTGTCCGACCTGGTCTTCACCGA
AGTCGGGACGGACTACCTGGCCGTGTCCTGGAGGGCGCCCGTCGACCTGA
ACATAATCAACATCGTGTCCGCGATGTGGGGCCGGACCACTCGGGAGCAT
TGCCCCGATGGTCCGATCCTCACCACGGACTGCCCCTCTGACCCCGGCAC
CCTGGCTGTGGCCAGGAGCATCTGCCAGTGGAAGTCCAGCTGCTCGGTGT
CGGCCACCCGAGACGTGTTGGGGGATCCTTGTCATAACACGCACAAGTAC
CTGGAAGTCGAGTTCACCTGCAGATCTGGAGAAACCACGCGCCAATCGTG
GACTACGGATGTACCAACCACAGGTGCAGAAACCACGCGCCCATGGTGGT
GGTCCTGGACTACTGATGCACCAACCACAGCTCTGTCCGACCTGGTCTTC
ACCGAAGTCGGGACGGACTACCTGGCCGTGTCCTGGAGGGCGCCCGTCGA
CCTGAACATAATCAACATCGTGTCCGCGATGTGGGGCCGGACCACTCGGG
AGCATTGCCCCGATGGTCCGATCCTCACCACGGACTGCCCCTCTGACCCC
GGCACCCTGGCTGTGGCCAGGAGCATCTGCCAGTGGAAGTCCAGCTGCTC
GGTGTCGGCCACCCGAGACGTGTTGGGGGATCCTTGTCATAACACGCACA
AGTACCTGGAAGTCGAGTTCACCTGCAGATCTGGAGAAACCACGCGCCAA
TCGTGGACTACGGATGTACCAACCACAGGTGCAGAAACCACGCGCCCATG
GTGGTGGTCCTGGACTACTGATGCACCAACCACAGCTCTGTCCGACCTGG
TCTTCACCGAAGTCGGGACGGACTACCTGGCCGTGTCCTGGAGGGCGCCC
GTCGACCTGAACATAATCAACATCGTGTCCGCGATGTGGGGCCGGACCAC
TCGGGAGCATTGCCCCGATGGTCCGATCCTCACCACGGACTGCCCCTCTG
ACCCCGGCACCCTGGCTGTGGCCAGGAGCATCTGCCAGTGGAAGTCCAGC
TGCTCGGTGTCGGCCACCCGAGACGTGTTGGGGGATCCTTGTCATAACAC
GCACAAGTACCTGGAAGTCGAGTTCACCTGCAGATCTGGAGAAACCACGC
GCCAATCGTGGACTACGGATGTACCAACCACAGGTGCAGAAACCACGCGC
CCATGGTGGTGGTCCTGGACTACTGATGCACCAACCACAGCTCTGTCCGA
CCTGGTCTTCACCGAAGTCGGGACGGACTACCTGGCCGTGTCCTGGAGGG
CGCCCGTCGACCTGAACATA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xfSc0000015 | genome | xfSc0000015:19673..22840 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96274_cuf3 |
| Biotype | protein_coding |
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