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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96276_cuf2 >transcript:BL96276_cuf2-protein ID=transcript:BL96276_cuf2-protein|Name=transcript:BL96276_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=736bp
CQNNGTCVDQLNDYTCLCTAGFTGDRCDSNVDDCDFNSCQNGGTCVDGIN
SVTCQCAPGYHGDFCEIETDDCAALPCQNDGSCTDIGSDYRCDCMMGFNG
KDCEINIDDCVGHMCRNGAVCEDGIGNYTCTCKPSFIGSYCETELSSDFD
LVFDGSVDGYSSTSYNIPDLNAVTVSFWMQTTDRINYGTPFSYALSEEVG
SDNALTISDYTAFTVYVTGEVAYSNHGIQDDNWHHIAVTWTNTSGEWKLF
DNGLLVDGGSGLGVGHTISGGGLVVVGQEQDYLGGGFTPDEAFIGSLHGL
NWWSRALSDGEITDLATSCNHSLRGDVLTWADFQLNVEGNTNVTAQSVCD
DTKECLSSPCENNATCTDYLGGYRCTCLPGYTGVHCGDNIDECLGTTCDN
GGTCVDLVNDFFCSCPPAYHGKNCELDVTTCSPNPCEHGGNCTDFEGGTY
SCSCSPGYTGNECEVDVDECSSGPCTNGGTCVDMVNDYYCDCLNGFFGQN
CDGEVDYCDPNLCQHGGTCQPITNDYNCTCPAGYNGYNCEIDIDECEGVT
CMNDGTCEDGIASYICACVEGFTGYHCGTNIDDCQSNPCGNDGTCIDGVA
AYTCDCPTMFTGDQCELVILPNLPQTTEPTGSTEQTPMASSESTTSDTGE
VPAQDSLTTPIIAGSVVGSIAVLVVAVLSWFLCRSPPAGSKVTGLRYRRP
PTPKVGVMDDSMILSELSTMSRATARPRENPYVVES Run BLAST on NCBI mRNA from alignment at Sc0000232:291189..297969+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96276_cuf2 ID=transcript:BL96276_cuf2|Name=transcript:BL96276_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6781bp|location=Sequence derived from alignment at Sc0000232:291189..297969+ (Branchiostoma lanceolatum)
TGCCAGAACAACGGTACCTGTGTCGACCAGCTCAACGATTACACATGCCT
GTGTACAGCAGGGTTTACAGGTGACTTACAAGCAACGTTTTCATGTATCA
TAGGGTCAGATGTATTCTTCAAAAAGCCCTACATTGTCAACGTTAACTCC
AGCTTGCAACTTTCTTAGTTCTTCCTGATTATTTTCAGTATCAATTAGAT
GCATGGTATGTTGTGACGGTACAAAAAAGAACACTGTACCGTTTAATCAA
AATACATTGATATTCACTGTAGTGAGTAAAAACGATTTTCTCTTGCTGAC
AGGTGACCGATGTGATTCTAATGTTGATGACTGTGACTTCAACTCCTGTC
AAAACGGAGGAACATGTGTAGACGGCATCAACAGCGTCACTTGTCAATGC
GCCCCTGGATATCACGGTAAGTATTTGCTATCGAACCTTTTTTCATTGTA
ACGCCAGGATAATCTAAGAAAATAATTTTTAAAATAATCCACATTTACTG
AGGTTTGTGATTAACATACACCAAGAAGACAATTATGTCTTTAAGGGGAT
ACAACTAGTATGTATAGATATTATTTCCTACACAACTTAATTATCGAATA
TTGTGCAGACATGGATGAGGTTTAACATATTACTAGTAACCAGCATCTGT
ATGTACACACTCCCAGAATACTTATAGCACGCAATAGAAACAACATAAAA
AGTCAAAAGTTTCCCTTCATTATTGTTCTTTTTTCGCTCGCCGCCTTGTT
TTCTCTCTCTTTATTTCTCTATATCTCAATAAACCCATGCATTGATGTAT
ACCTTTCAGGTGACTTTTGTGAGATAGAGACCGATGACTGCGCAGCCCTC
CCCTGTCAAAACGACGGCAGCTGTACAGACATCGGCAGTGACTATCGGTG
TGACTGCATGATGGGTTTCAATGGGAAGGACTGCGAAATAAACATAGACG
ACTGTGTCGGACACATGTGCAGGAACGGAGCTGTTTGCGAAGATGGAATA
GGAAACTACACCTGTACGTGCAAACCATCGTTCATCGGCAGCTATTGCGA
GACAGGTGAATATATGATAATATAAATTCATCATTTTTCTATATCTCCTA
CGTTTTGTTTTACAATAAACAATTGAATGTATGCGGTGTAGGTTTTGGTC
ACCGTGTTATATTGTCTAAATGAAATCGCATGAAACATAAAACGAATTGA
TGATTTTGTCTGTCCTTTCAATGTAGCTTTAAGATATTTTTTCAAAACAG
ATTTAGTCAAAACTACTATTGTCTCTTATAGAGCTGTCCTCAGATTTTGA
CCTGGTCTTTGATGGTAGTGTGGATGGGTACAGTTCCACCAGCTACAATA
TTCCTGACCTGAATGCGGTAACAGTGTCGTTTTGGATGCAGACCACTGAC
CGCATTAATTACGGCACCCCGTTCTCATATGCCCTGGTAAGATGATGATG
ATACAGCACTACGTTATTGCTCAATGATTCATGGCAAATTTATCTTAAAC
AGTTGTGTATATATTTTGTTAGTGTTACAATATTGTATGCAACTGGAGAG
TTTACAGGATGTAACATTCATTCCCATGCATCATTAAAAGAATGTGCATA
TTGTACGTAGCTCTGTGTATTTGTGCGGTATATAATCCATCGCCTACAGA
TATATGCAAAAACTAGCATCATTTGAATATACACAGGCATAATCGCACAA
TTTTACGTAACTATGTAGAGCAGATTTTACGCGTTTCCATGAAACATTAT
GCTACATTTTGTATAGTTAAGCATTTTTGTCCTCTTCACCAATTTCCAGA
GTGAAGAAGTCGGAAGTGACAACGCTTTGACGATATCTGACTACACAGCC
TTCACGGTCTATGTAACTGGCGAGGTAGCCTACAGCAACCATGGGATCCA
AGACGACAACTGGCACCACATCGCCGTAACATGGACGAACACTTCGGGCG
AGTGGAAACTATTCGACAATGGGCTTCTTGTCGATGGAGGCAGTGGACTT
GGCGTTGGTCATACCATATCGGGTAAGTGGCTTTTTCTATAATCAATGTA
ACTGCCGTGTATGATGTTTACGAATTGAAAAGGAGTTCATCGTTGCTTTA
TAAGATCTGTGAATTCATAATGGCAGATGTCTATCAATCACCAGTCACCA
TGGTAACCACCGTGTTGATACATTTGTATTCACACTAGGAGGTGGCCTCG
TCGTCGTTGGTCAAGAGCAGGATTACCTCGGAGGTGGTTTTACCCCGGAC
GAGGCCTTCATTGGTTCTCTACATGGGCTGAACTGGTGGAGCAGGGCGTT
GTCTGACGGTGAGATCACGGACCTGGCTACGAGCTGTAACCACTCCCTGC
GCGGCGATGTCCTGACCTGGGCAGACTTTCAACTGAACGTGGAAGGAAAC
ACCAATGTAACGGCCCAGTCCGTGTGCGATGGTATGTACATGTTTCTATT
CTGTAAAAGCCATTTCCCAATAGCGGGATCAAGGCAAAACTACATAAAAA
CTACTTAAAACAAAGACATAATCTTTAGATGTATTCCTGTTTATTCTCTT
CAGCCAAGGAAACAAGTTGAACCTTTAAGTAGTCAAAGCCTAATAGTCTC
GGTTACATTTTTGCTTAAAGACAAAAGGTATGTTGAACTGACTCAATGCC
TAACCATTGTTTCAGATACGAAGGAATGCCTGTCGTCACCATGTGAGAAC
AACGCTACGTGCACGGACTACCTCGGGGGGTACCGATGCACCTGTCTCCC
CGGGTACACCGGTGTCCATTGTGGAGACAACATAGACGAGTGCCTCGGGA
CGACATGTGACAACGGAGGAACGTGTGTTGATCTGGTAAACGATTTCTTC
TGCTCCTGCCCACCTGCCTACCATGGCAAGAATTGTGAGTTGGACGTGAC
TACCTGCAGTCCGAACCCATGTGAGCACGGGGGTAACTGTACTGACTTCG
AAGGCGGAACATACTCCTGTTCATGCAGGTTAGTTCAATAAATTACTTTC
CTCTAGAAGCCTACATGATAACCTTTTGAAGGACATTAGGTATTCCACGC
TGAACCACTTGGGCGTTATTTTGAATATTGGCAAAAGAGTTTAATCATAT
AGATCAAGATACCTTTTAACCTGGGATAGTTACATTAAAGTTCTTGCAAA
GGGATAGGCTTCGTAGCATTATTCATCCTATTGTACAAGAAACCAGAGTT
GTGACAAAATTGTGATATAGGTACTGCGGTCATGGCATTGCATTACTTGT
TGACCTATGGCCAAAATTATAGTAACTTGTACAAGTTGCATGTTAGTAAG
GTATACCTTAAGTAAGAAAGACAACCTCGGAATCTTGTCGTGCGGAGTAT
GGAAAACAGATCGAACAAGAATTCAGAAAACTCATATCTCTATGAAATAG
TAAGATTATGCAAATTACTTCCGCATTTGTACAATCCTTTAACTGGCCTA
CACAGGTCGCAAAGTTAACAGTCCAATACTTTACCACTCATATGAATTAT
TGTACTTTTACATTAATCATGCAAATTAGGAATTTGTTTGCATAATTGGT
ATAACCCTTTTCAGCAGTGCTGAATGCGCTCGACAAACATTCCCAGCATG
TCTTCGTCGTTCATTTTTTCAGTCATGATACTTGGAAGATTTGACAAAAA
AGCCTCTGCAGTTCCAGATCAAGCTGATAGAGGGCCAAAATTAACACCAC
TTCTTCTTTACATCACAAGCTTTATGCCACAAAATACAAACATTAGAAGT
GAAAGACAAAAATAATGCTGACTATAAAATCCGAAAACTCGCGCACACAC
ACACACACACACACACACACACACACACACACACACACACACACACGCGC
GCGCGCGCGCGCACAAACACACACACAAACACGACAAAAACAAATTCTCC
ACTTTTCATGGAGATAATGGCACTGGTTTTTGTCAACAGCCCAGGGTACA
CCGGAAACGAGTGTGAAGTGGACGTTGATGAGTGCTCCTCAGGCCCTTGT
ACCAATGGCGGCACCTGTGTCGACATGGTCAACGATTACTACTGTGATTG
CCTGAACGGCTTCTTCGGACAGAACTGCGACGGAGAGGTCGACTACTGTG
ACCCTAACCTCTGTCAACATGGTGGAACCTGCCAACCTATCACCAATGAT
TACAAGTAAGTATTCATGAAGTACATTTTCAGTTTTAATCAAATATAATG
GATACATCAGTTATTCATCAAATGTGACAAAGCAAAGAAGTTTTAAAATC
ATGAAATAAGTACGGTTAGAGCGAGGGAAAAAGTCAAATTCCTATCTTTT
GTCCTAGTTGCACCTGCCCAGCTGGCTACAATGGCTACAACTGCGAGATC
GACATTGACGAATGTGAAGGAGTCACGTGCATGAACGACGGCACATGCGA
GGACGGGATAGCATCCTACATATGTGCGTGTGTGGAAGGCTTCACTGGTT
ATCACTGTGGCACAAACATCGATGATTGCCAAAGCAACCCATGTGGAAAT
GATGGCACCTGCATTGATGGTGTTGCTGCCTACACATGCGACTGTCCCAC
AATGTTTACAGGTTAATTTAGTTTATTTTGTAGTAAAAAAATTGATGAAT
GATGACTTAGTCTACTTGTCTATGCAATGGTTTGTCCAAAGTAACAGTTA
CACACTAATTGATATGTGATTTAAATAGCCTTCTTGATTTCATGAATAAC
CATGGACCCCAGTGTAGACAAAATGCTTACCCAATCCCTGTTAACTTGAG
CATGGTGACCTATGCATACTTTTGTTACTTTTTTTTTAACAGGTGACCAG
TGCGAGTTGGTGATTCTCCCCAACCTCCCTCAAACAACAGAGCCCACTGG
CTCCACGGAGCAAACACCAATGGCTTCATCCGAGTCGACAACATCAGATA
CCGGCGAAGTGCCTGCACAAGATTCCCTGACTACACCGATCATTGCAGGC
TCCGTCGTAGGTTCCATAGCTGTCCTCGTTGTGGCCGTATTGTCTTGGTT
TCTCTGCAGATCCCCTCCTGCAGGGTAAGTTCTTTATGTAACGCTGATTG
TAAATAATGTGAACCCTTCACAACGCGTCCAGGTCTCTATCATTTTGAAC
CGTGGATTTGGAAACAGCCTATTTACACTTTCCTTTTTTCAACAACATAC
CCACAGTGATTTTTTTTCATAACATCCCGACAGTTTAAGACCGATTGGCA
AAATAACTGTAAGCGTTTTATCTCATTAGTCCCGTTGATGTAACTGCTTC
TCTTTTTGTACGTAGGTCAAAGGTCACAGGTTTGAGGTACAGGCGGCCCC
CAACCCCTAAAGTTGGCGTGATGGATGACTCGATGATCCTCTCCGAGCTA
TCTACAATGAGCCGTGCCACTGCGCGCCCCCGGGAAAACCCGTATGTCGT
CGAGTCGTAGAGGGCTTGTTTGTTTGTTTATTTTTATTTCACCAAGGGAA
TCATGTCGCCAGCAGTCGGTTTTCAATGAGCCCTGGGGGGAAACCCCAAA
CAAAGTTGTTTACATAAAATTCAAACAAGGTTGCAAGAAAGAAAAAACTT
TATTCGAACTACAGATTGATATAAAACCGGAGTAACTTAGATAACATAAA
CATGATATCATATAACCAAATAATTGCTTTGACATAATGTACTAATAACA
AAACATAATAGAATGAAATAAGGTTGAAATCAGGATTTGCTTTTAAAAGG
AGTGTTATGTAGTCAGTTTTATTTTACAATAACTTTCTTGATTACGATTG
CGGATTCTGTTATACTTGATTTACTTTACTTTATTTTTTGTTACACCAAT
TTGAATACCACATGGACATATTGGAATTTCGTTAATCCAGATTGTGTGAT
TTTAACCGGAATATTTTGTGTAGTAGATTGTTCATCTACTAAAGAATGTA
GACGTGTAATACTGTATATGCAGAAATGTTCGCGGTGGTTTTATGTCCGT
AGTTTTTTTTCCGGTGAACTTTTTACCGCGTACTTGAAACCACCGAGGAA
ATACTTTAATTGCGTGACTATAGCGTCACTATTGTTTCAACGAACCACCG
CGAGCACTCCGTTTTCCCCCTGCCGCGAAAACAAATCCCCGCGAATATTT
CTGCATTAACAGTACTAGCTGATATTTCTATGTATTTTTTTACACTAGCC
AAGGGTGTGAGCATTTTTTACACTAGCCAAGGGCTTGAGCAAATGATGTT
CTCTAAGCGTTTTCATTTGTCTTTAGCTTCAGCGATTGGTGTCGTTGTGA
ATTGTGGTCTTTGGTTTAAGTTGAAAAAACTGAATTGACCTCTAACATTT
TAGTTTGTACACTTGTAGATGATACACATTTCATATAATCTACAAAGTTT
TCAAACTGTATCGAGTTTTTCCAAATGTAAGTAAATTAACAAGAAATACG
CATTGTACCCTGTCTCATGAGCTGGCGTACTAGTTGCATTCGTGGTGAGG
GCTGGAAGACAGCGGATGATGTCTGATTTAACATCTCTCAGTTAAAGACT
TTATCAAGTTGTTTGATTTTTCTTGTTCCCTCACTTTACTTTTATGTAAA
GATTTGCCTACTGCTATTAATGTATAATGTACAAGGATGTCTAACAATCA
CTGACGTACTAATTGGGTTTTATTTTTAGGTTGTATCATCCTATGAAATT
GCAACTAAAAGATGATATGAGTCTTACACAGTAATTTTCAATGTAATAGC
AATACTTATTATACACGTATTATGCTTGTTAACACACTGAAAGAATCCCT
ATCCAAGACAAATTGAATAAAGACATTAAAG Coding sequence (CDS) from alignment at Sc0000232:291189..297969+ >transcript:BL96276_cuf2 ID=transcript:BL96276_cuf2|Name=transcript:BL96276_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2211bp|location=Sequence derived from alignment at Sc0000232:291189..297969+ (Branchiostoma lanceolatum)
TGCCAGAACAACGGTACCTGTGTCGACCAGCTCAACGATTACACATGCCT
GTGTACAGCAGGGTTTACAGGTGACCGATGTGATTCTAATGTTGATGACT
GTGACTTCAACTCCTGTCAAAACGGAGGAACATGTGTAGACGGCATCAAC
AGCGTCACTTGTCAATGCGCCCCTGGATATCACGGTGACTTTTGTGAGAT
AGAGACCGATGACTGCGCAGCCCTCCCCTGTCAAAACGACGGCAGCTGTA
CAGACATCGGCAGTGACTATCGGTGTGACTGCATGATGGGTTTCAATGGG
AAGGACTGCGAAATAAACATAGACGACTGTGTCGGACACATGTGCAGGAA
CGGAGCTGTTTGCGAAGATGGAATAGGAAACTACACCTGTACGTGCAAAC
CATCGTTCATCGGCAGCTATTGCGAGACAGAGCTGTCCTCAGATTTTGAC
CTGGTCTTTGATGGTAGTGTGGATGGGTACAGTTCCACCAGCTACAATAT
TCCTGACCTGAATGCGGTAACAGTGTCGTTTTGGATGCAGACCACTGACC
GCATTAATTACGGCACCCCGTTCTCATATGCCCTGAGTGAAGAAGTCGGA
AGTGACAACGCTTTGACGATATCTGACTACACAGCCTTCACGGTCTATGT
AACTGGCGAGGTAGCCTACAGCAACCATGGGATCCAAGACGACAACTGGC
ACCACATCGCCGTAACATGGACGAACACTTCGGGCGAGTGGAAACTATTC
GACAATGGGCTTCTTGTCGATGGAGGCAGTGGACTTGGCGTTGGTCATAC
CATATCGGGAGGTGGCCTCGTCGTCGTTGGTCAAGAGCAGGATTACCTCG
GAGGTGGTTTTACCCCGGACGAGGCCTTCATTGGTTCTCTACATGGGCTG
AACTGGTGGAGCAGGGCGTTGTCTGACGGTGAGATCACGGACCTGGCTAC
GAGCTGTAACCACTCCCTGCGCGGCGATGTCCTGACCTGGGCAGACTTTC
AACTGAACGTGGAAGGAAACACCAATGTAACGGCCCAGTCCGTGTGCGAT
GATACGAAGGAATGCCTGTCGTCACCATGTGAGAACAACGCTACGTGCAC
GGACTACCTCGGGGGGTACCGATGCACCTGTCTCCCCGGGTACACCGGTG
TCCATTGTGGAGACAACATAGACGAGTGCCTCGGGACGACATGTGACAAC
GGAGGAACGTGTGTTGATCTGGTAAACGATTTCTTCTGCTCCTGCCCACC
TGCCTACCATGGCAAGAATTGTGAGTTGGACGTGACTACCTGCAGTCCGA
ACCCATGTGAGCACGGGGGTAACTGTACTGACTTCGAAGGCGGAACATAC
TCCTGTTCATGCAGCCCAGGGTACACCGGAAACGAGTGTGAAGTGGACGT
TGATGAGTGCTCCTCAGGCCCTTGTACCAATGGCGGCACCTGTGTCGACA
TGGTCAACGATTACTACTGTGATTGCCTGAACGGCTTCTTCGGACAGAAC
TGCGACGGAGAGGTCGACTACTGTGACCCTAACCTCTGTCAACATGGTGG
AACCTGCCAACCTATCACCAATGATTACAATTGCACCTGCCCAGCTGGCT
ACAATGGCTACAACTGCGAGATCGACATTGACGAATGTGAAGGAGTCACG
TGCATGAACGACGGCACATGCGAGGACGGGATAGCATCCTACATATGTGC
GTGTGTGGAAGGCTTCACTGGTTATCACTGTGGCACAAACATCGATGATT
GCCAAAGCAACCCATGTGGAAATGATGGCACCTGCATTGATGGTGTTGCT
GCCTACACATGCGACTGTCCCACAATGTTTACAGGTGACCAGTGCGAGTT
GGTGATTCTCCCCAACCTCCCTCAAACAACAGAGCCCACTGGCTCCACGG
AGCAAACACCAATGGCTTCATCCGAGTCGACAACATCAGATACCGGCGAA
GTGCCTGCACAAGATTCCCTGACTACACCGATCATTGCAGGCTCCGTCGT
AGGTTCCATAGCTGTCCTCGTTGTGGCCGTATTGTCTTGGTTTCTCTGCA
GATCCCCTCCTGCAGGGTCAAAGGTCACAGGTTTGAGGTACAGGCGGCCC
CCAACCCCTAAAGTTGGCGTGATGGATGACTCGATGATCCTCTCCGAGCT
ATCTACAATGAGCCGTGCCACTGCGCGCCCCCGGGAAAACCCGTATGTCG
TCGAGTCGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000232 | genome | Sc0000232:291189..297969 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96276_cuf2 |
| Biotype | protein_coding |
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