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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96280_cuf7 >transcript:BL96280_cuf7-protein ID=transcript:BL96280_cuf7-protein|Name=transcript:BL96280_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=174bp
MAANKDASAVVTLQLPQKITAQYLRIIPVSWAEGGIGLRAEVYITAAAVA
SYRPTFKITKTQTQTKTSSKQLDCGKWQTWLGAMKAHPMFGKIMKTCAAQ
ICKDPAFKANPLAADYCKSKREQEGREVESEGLTVTVDDVDGDDDEEQQL
VRKIDNVKDTLQMLIQQARWEADM Run BLAST on NCBI mRNA from alignment at Sc0000557:38206..43679+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96280_cuf7 ID=transcript:BL96280_cuf7|Name=transcript:BL96280_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=5474bp|location=Sequence derived from alignment at Sc0000557:38206..43679+ (Branchiostoma lanceolatum)
TATGGCTGCAAACAAAGACGCTTCGGCGGTGGTGACCCTTCAGCTTCCCC
AGAAAATCACGGCCCAGTACCTCCGCATCATCCCCGTCAGCTGGGCCGAG
GGAGGCATCGGACTCAGGGCGGAGGTGTACATCACAGCCGGTAGGGACAT
TTCTTCTCATAATGAATGAATGAAGACCTATATTGTACAACTTTGCCACA
CTGTGATAAGTACAGGTCAAAACAATGCATGTTAAAAGTTAATGAATGCG
AAGTAAGCTAGCTTACATTTGAAAATAATACAACTTCTCCCCGCTTTTAG
TCAAAGAGGAAATAAACGAACAGGTATAGATAGGATTTTTGTCTACCTGC
ATTAGAAATATGAATTTGACTAATTTACTTAATTGGATATATATGTAAAT
ATGACTTGTATCTGGTTAGTTAGCCAGTGTATTTTTCTCTTTGCTATGTA
TAATGCATCTCTGAACATAGGAGCATGCGGAAGATCTGGATTCAACTTTA
TTTTGTCCTACAATAAGCTTATAATTTCAACTATCTTCGAAGCTTCTTGA
AAAATATCAGATACAAAACCACGTTATAGACAGGGTAACTAAGATACATA
ACAAGAATTTCAGAAAGAAAATAAATGAGTCCATTTGCTGAATAGATACT
AGTAGTTGTATGCTTAACCAAGAATGACATACCCTTTATGTACTTTTATT
ACTTTGAAGACCTTTACTAATTTGACGCAATTTATGCCCCTACAGCTGCA
GTTGCAAGCTACAAACCAACCTTCAAAATCACGAAGACATCGACACAGAC
ACAGACAATAACACAGACCTCGAGCTCCACTGCACGTAAGTCGCCCTGCC
TGAAATTACATCAACCAAACAAACTGTGCATAAAACAATGCCTGATGAGT
CGCTATTTCCGTAATTTGATACTTGTGTTTCTGAATAAGTTCTTAATGCA
CAACCAAGGAGTAACATAACGGCCGACTCTTCACCTTCTTCGGTGCGGTG
CTGACTGTTTCACTTTGCACTGCAATCAGGTGCGACTGCTTGACATTACG
GTCCCAAACGTAAAGTTTTGTAACATACATAGATATTGATGTATTTTTGG
CAACCCTGGGTAAAAATGACAGAAAATGAATGAAGATAAAATAGAATAAC
TTATTAAGTAATTCTTGCCCTCACGAAAGTGACAGACGGTGAACGAAACG
TAGGCTCTTATGTCACGTTTTGGTTGTAAAGAAAGAACGCTGTAATTTCA
GTCATTCACAAATCTGACGAAGTTATTTACGGATGTACTTCTGTTTTTGT
CTGACAGAACTAGCGCCGGTTCTGGCTGTCATCCCGGCCCAGGCCCTGCC
TATTGTGTTCAAGGCCTCCTCGGAGCTGGACGCCGCTCACGCAGCCACCA
ACGGCCGCCTCAGCAGCGAGTCTTTCTGGGCATCAGCCACAAATGATAAG
AACCAGTACTTACAGGTACGAGTTTCTCATATATCCGTTTCTTTTGAAAC
AGAATGAAATTGTCTGTTGGAATTAATGCCACTTCAATTTAGGAGGAGGT
TCCACTCCGAAAGCTTCTTTCCTAGAACTACATCGGTATGGAATCAGCTT
TCTCGTGATTGTTTCCCTGATGTCAAAGGTGAAGAAACATCCAAAACATG
TGAGCGGCTCTTATGAGCCTTGTTTTGTGATGAAATTGAAATAAATGAAA
TTATTCTTTGCATGTCTCTTATACAACCACAGCTACAAGATAAGAAACAC
AAGGAACAGGTGAAGTCAAGAACGTATTAGAGTGATGGTGTTCATCAACA
AAGAAAATATGATATGTTCAAAATTAAGGAATTTATGTCAGGAATTCCAT
CTATTCCTTAGATCAACCTCGGTCAGACCACAACGATCGCCGCTCTGGGC
CTGCAGGGCGGAGGCAGCCGCTGGGTGGCGACTTTTAGGATCCAGTCTAA
AGTGGAGGGAGGGGACTGGAAGGACTACACGGCAGGGAAGGGCGCTGCTG
TGGTGAGTTATTCTTCTGTATAGTGTACTACTATTATAATAGTAAACAAA
ATGCCACTCGGTGTAACACAATGTACATTGGCTTTGTAGGGACTGGCCTG
TTTCACTATACAGAACAGCAGGCTACTCAGAAACCCTGCAAGTTTATCTG
AAATTTTCTCAAGAAGGAGACAATACACTACTTAACAGTAGAATTTGGGA
CAAAGGTTCCACGACGAAAGATACTTTACTTAGTTCATCTACCTTTAGCA
ATGTACTTTTACCAATGCTTTGCAATAATTGTCATTTTGGCGGAGGCAGT
TAAACTCCTTGTGAGCTAGATATTGTCATAATATCAGTCTTGAAACCAAA
GAGGTTAAAATCCTTCGAAAACTAACACAGTGAATAATGTTATGGCACAG
GTTATGGCTGCAAACAAAGACGCCTCCACGGTGGCAACCCTCCGGCTTCC
CCAGCCTATCACAGCCCAGTACATCCGCATCATCCCCGTCACCTGGGCCG
AGGGAGGCATCGGTCTCCGGGCCGAGGTCTACATCACAGCCGGTACGTGT
TACTGCACTGAGCACAGATAATACTTTGAGCTCCACCAAAGCTAATCTCA
AAGCAGATCAAAACAGCCGTAGTTTTCTCTGGCTGCTGCAACCCAGGTTG
TGTATCATGAAAATACATTATGATCGTACAGTGGTTTTAATTCAGTGACA
ACACTGGGATATTCAATAGAGTTCTCTTGTATCTTGTATGTTAAAAACGT
TAAAATAATGTTAAATACATCTTCAAAACAATAATCCTAGCATATAGCTG
TTCTCTTCTACATGCTGTGTAATAACGTTAACACTGACAAGTAAATCATT
TTTACCAATGTATCCATTGCAATGTACGTACTTACCACTTTATGATTGAC
GTGCCTCCATATAGTCAAACGCTTCGGCAAGGATTTTATTTTGTACTTGT
ATTGTCTAAAATTACGTCATTGAGCTAGTCTTACCTATGTATTATATTTG
GCTGCAATGAAGTTTTAGTGTATCTATGTACCAGTTTGTCTATAAACCAA
TCTATTCATATCCGACTCTACAGCTGCAGTTGCAAGCTACAGACCTACCT
TCAAGATCACTAAGACCCAGACACAGACTAAGACCTCGTCCAAACGTATG
TCACCCATCTTCTAAAAAATTTGTTTGTTTGTTTGTGTTGTCTGTGCTCA
AGTTTGTTCCTGCTGGGCCGGATACAAGTTTGTTCCCGGGCTGAGTTGTA
AGGCCCCCCTCTCACTGGACCCGCAACACGCTGGCGGCGTCGCGGCGGCG
TTGCGGCGGCCAATCAAATTGACAAAGCACTCAATGAATTTCATGGACAA
ATAACGAATCTTAAGCTTTGAGTGTTTTGTTGTCTTTTTGGCAGTACTTG
TACGTTTTGAATGATATTCCCATTATAAAGTCAAGGGTAACACAAATCCA
GTTTAGGACGCAGCGACGCCATCGTGCCGTGGGTCCAGTGAGAGGAGTTA
ACGTGAGACTGGCAGGATGCGAATGTTGAGCTGGCCTGAGATTAAATTTC
TTTGACAAACTGACAGGAAGTGAACGTTGACACAAGGACAAACGTCAGAA
ACTCGAGAATGGCATGTACACGAGAATGGAGCATGCAGTGCGTGAAATGG
ACATGATTGCGTTATATCTTATCATGACGTTCAAATAATAAAACTCTCGA
TATTCTGACTTTATGGCTGTTGTTTTTTGTTTAGTTTCCTTGCAGCTGTG
TTTTAAATGCGTATGGTCTACTCTATGTTTTATAAAGATTAATTTCTACT
TCTTGTGCTACAGAGCTTGATTGTGGTAAATGGCAGACATGGCTGGGCGC
CATGAAGGCCCATCCTATGTTTGGAAAGATCATGAAAACTTGTGCAGGTA
AGAGCATTTTACTGCAACATATTGAATAATGTATTTCCTGTAACAGAGGA
AAACAAAATAAATTATATCATTCGGTGTATATGAGGCATCCGTTTAATTC
GTTTCCGTTAGACTTGTGAACGTTAGTATTCGTGCTAGCAGTCCACGTCT
CACGATGAGGAATCTGTCTAATTTTAGGTCGCAGCGAGGTTGCTGCCCTA
GTAGCATTTGGGTATTAGAAGCGCAAGCCTATAATTATAGTTCGCATGTA
CACATGCAGTTTTGGGGACTTGTTATTTTAACGCAACTACATATCTTATC
AATCTGGGACAGGGAACTTTTCAGCAACGATTAATCGCCTTTGTTCTCTT
TGTTCTCAGCGCAAATCTGTAAGGACCCTGCTTTTAAGGCCAACCCTCTG
GCCGCAGACTACTGCAAGAGTGAGTAAAACAACAAACTTCTTTACTACCC
TCTTTACCTAGAATAACCCTTGAATATACCATCCATTTTACTGGTGTTGT
AAAATCAATTCTAAAAACATAGAAAAGAAAACGTACAGGGGTGGAAACGA
GGAAATTATGTCTTGTTTGAAATCTTGATCCATCAAAGCAAACAGGTAAC
GTTAATAGTAATTCTTGGATTAGGTCAGAACAGTTTAACCTTTATCCATG
ATTAAGACTGACTCCTTTTTCTTCGTTCTCTTCCAGGCAAGCGTGAGCAG
GAGGGGCGAGAAGTCGAGAGCGAGGGCCTGACCGTCACCGTGGACGACGT
GGATGGAGATGACGACGAGGAACAGCAGCTGGTGCGCAAGATTGACAACG
TGAAGGACACCCTGCAAATGCTCATCCAACAGGCTCGTTGGGAGGCTGAC
ATGTAGTGCCATCTGGCGAGTTTCTATTGCAATGCAATAGCTTAATGGTG
GTTTATCATTCCACTTGAAAAAAAGAAAACGTTTTATATGATTCGTTTAA
GTCATCGGTGAAAATCGTTAGTTTAAGCAACCAAGACTTCAACTTCTCAA
GATTGCGAGGAGCTGTCATGGTGCATCTTTAAGATACTGCACAGGGTCTT
GTTATTCTTTGTTGATAATGATAAGGTGCTTAAAACTCGTGGTTGAATAA
CGATATACTTTTTACTTGTATTCAATAAAGTGGTGCCTCTTGGGTTTTTT
CTATGTTGTGACGTAGGCTTGATGCGTAAAGTACTAGTAGTATAAACTTC
TTGAGTAGATCATTTAGGTACAGAAAATGGCTGGGCAAAACGTGCGATAT
CAGAATAAGCAGTAAACTATAGTATAGGGCTGCCTTTTAGGTATATTTAG
AAATCAGAAATAAGCTAATTAGAAATACATTTCGTTGGTTGGTGAAAATG
AGGTGTAACAGAAGAGAATTGGCTTGTATGAATAAGTCGTATGTCTGCCG
ATAGGACATGTATAACAAAGACTGATGTTCAGTGTTTTCATGTGAAGATT
TGACAAGATATGGACTGTATACAGTGCAAGACAGAACTAAGAACTGAAGA
GTGAGTTGCGAACATAAAGACTTGATAAAATCTTGACTGAGACTGTGGTA
CCTAATAAAATACGGAGGCGGGAA Coding sequence (CDS) from alignment at Sc0000557:38206..43679+ >transcript:BL96280_cuf7 ID=transcript:BL96280_cuf7|Name=transcript:BL96280_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=525bp|location=Sequence derived from alignment at Sc0000557:38206..43679+ (Branchiostoma lanceolatum)
ATGGCTGCAAACAAAGACGCTTCGGCGGTGGTGACCCTTCAGCTTCCCCA
GAAAATCACGGCCCAGTACCTCCGCATCATCCCCGTCAGCTGGGCCGAGG
GAGGCATCGGACTCAGGGCGGAGGTGTACATCACAGCCGCTGCAGTTGCA
AGCTACAGACCTACCTTCAAGATCACTAAGACCCAGACACAGACTAAGAC
CTCGTCCAAACAGCTTGATTGTGGTAAATGGCAGACATGGCTGGGCGCCA
TGAAGGCCCATCCTATGTTTGGAAAGATCATGAAAACTTGTGCAGCGCAA
ATCTGTAAGGACCCTGCTTTTAAGGCCAACCCTCTGGCCGCAGACTACTG
CAAGAGCAAGCGTGAGCAGGAGGGGCGAGAAGTCGAGAGCGAGGGCCTGA
CCGTCACCGTGGACGACGTGGATGGAGATGACGACGAGGAACAGCAGCTG
GTGCGCAAGATTGACAACGTGAAGGACACCCTGCAAATGCTCATCCAACA
GGCTCGTTGGGAGGCTGACATGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000557 | genome | Sc0000557:38206..43679 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96280_cuf7 |
| Biotype | protein_coding |
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