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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96285_cuf2 >transcript:BL96285_cuf2-protein ID=transcript:BL96285_cuf2-protein|Name=transcript:BL96285_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=476bp
CEPGYHGDGRRDGSGCTDINECTDDATLCDDNAICTNTNGSYQCTCRDGF
AGNGITCSDVDECLDGSADCHDHAHCHNQPGSYFCTCAAGYEGDGRTCED
TDGCLEGICVPEAVCTDVPAPGVGAVCTCPLGMDGDGRQDGTACSETDGC
GREWSPCVDDAWCEDVPAPGVGAVCHCPPVSEGNGRREGSGCSDLSICSS
AHNPCVANATCDDQVNPPVCTCPPGWQGDGRRDGFGCEDMDECADDTAMC
EQTCTNAPGSFSCACQQGFMLNDDGRTCQDVDECTVDNGGCQHLCENEYG
SFYCECRDGFQLGSDRKSCQDINECHEDHSCSQVCNNTAGSYFCSCWDGF
ILAEDGWTCRAENPCADETAAGCDEMNGWCRTEEGRAVCGCNSGFILTQD
GRTCQDIDECADDNSCHDNATCINFPGSYSCSCDDGYQGDGITCSDINEC
AEDQYICDPLRSTCVNLPGSYHCDCL Run BLAST on NCBI mRNA from alignment at Sc0000036:1017366..1024998- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96285_cuf2 ID=transcript:BL96285_cuf2|Name=transcript:BL96285_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=7633bp|location=Sequence derived from alignment at Sc0000036:1017366..1024998- (Branchiostoma lanceolatum)
TGTGAGCCCGGTTACCATGGTGATGGGAGACGGGATGGTAGTGGATGCAC
AGGTAAGTTCATTGGAACTGGATTTGTACATGTACAATTCTTTCTAATAG
TCTCTCTAAACCTCCTCCCTGCTGACTAACTCTGTAACCAATAGGGAATG
GGGTGCCAAACGGCTACTTCAGTGTGCTAAAGGTTAAGATAATTTCTATT
GCGGTAAGATAATTGTAACTGCTGTCTTAAATGAATGTAATTTGTGCATA
AGGTATGATTTAAATGCATCTAAAATTGTCAATTTTAAGGGACAATGTAC
CTTACATTTCTCAACACTGACCATAGATCTCTAATTTTTTAAAACCTATT
TTAGATAGAGAAAATGCATTTTCAGCAATGTTTAGATTCTTAATTTCATT
TCAATAAATCAGCAACTTCTCACGAAAAGTATGTCACTTCAAAGGCATTT
AAAATGTCACTTGTAAGCAACAATATAGGAAATCTATTTAAAAAAATGTG
TCGATAGTTTTATGACGCTTAAAGTCATTTTTTCATTAGCAGGAGAAAGA
AAGATATGTTGCAGCAATCAGTAGATTTTTCCATCCATTTCAATAAGCCG
CTTTCTTATTATCTTCCACAGACATCAATGAGTGCACGGATGATGCAACA
CTTTGTGACGACAATGCCATCTGTACCAACACAAATGGGTCGTACCAATG
CACCTGTAGGGACGGCTTTGCGGGCAATGGAATCACCTGCTCAGGTACAG
AGTATTACAAATGACAGTGCAAGAATGCCACCTAGCATATCGAATATGCA
TTGCAGCTGCTGTTTGAGTCTATTTGATACAGTAACTTCTTGTAATGGCA
TATCAGCGTAACAGTGAACACTTATGAGTGATATGAATAAAACAAGTGTA
CGAAAACTATTGACCCACAGTATTTTAAGGATACAGTTTTACTGTATGGC
AAAGGACAATGTGTTCAGGGACAAGCGATGATGCAAGTTGTCATGTTCTG
TAAACGCCTTTAAGTTCGCAGTGGTTTGATTTTGCTGTAAGAAGAAAATG
GAGTGCTTGCGGTGGTTTTAAGCTCACGGTAGCGCTGTAATCACATACTG
TACGGTAATGATAACACCGATGGTTTTAAGTTTGTGGTGAAGGAATCAAT
ACAAAAATCGCAAACAAAAAACCACCGCTAAAATTTAAAGAAATATAGTA
ACATGCTATTGTCACTGTTTCCTGTTACAGATGTTGATGAGTGTTTAGAT
GGGTCAGCTGACTGTCATGACCACGCCCACTGTCACAACCAGCCTGGGTC
GTACTTCTGCACATGCGCAGCTGGGTATGAGGGAGATGGCAGGACATGTG
AAGGTGGGAGATGATCATAAACCTTTGAAGAGTTTTTTGGTATAATTGTG
GTTCAGCATAAGCAAAGAAGTGACAGAACTTTGTGATGTACTCTGAAAAA
TGAGAACTTACACTCTTTTTTTGTTCCTTTCAAATCATGTCCTTTATCTA
TTGAAATCCTGTCCAATATCTGTTATAGAAATCAGAAAGAATTATTTTCG
TTGTTCAAGATTGCAGAAGGACATTTTTAAATCATCGTTTTTGTTTGTTT
TAACATTTTTTATCCTTTTCATATGGTGAAAAAAATATCTCATATAAAGC
TTTTTATATAGGTGAAAAATGAGAAATTCATTCATACACAATTAGTCATT
GTTTTATTGCCATGTTTATTCAAACATCAAAATGTCCTACTGCCTGTTGC
GTAGATACTGACGGTTGTCTGGAGGGTATCTGTGTACCAGAGGCTGTGTG
TACGGATGTGCCTGCCCCAGGGGTGGGGGCTGTGTGCACCTGCCCCCTGG
GGATGGACGGAGATGGCAGACAGGACGGAACAGCTTGTTCTGGTGAGTGC
AAAAGATCAATTGATAATACAAAAATTAAGTAATTATTTGTATAAAGATT
CTAAGCTTTCTCACTTACAGGGAATCCGATGTTTGTTACCGAGATAAAGG
TTACATATCAAGGTAATGAGATTCACAATAGAAAAGTTACAGAAGCAACT
GGATGAATTTTGTCATCATCAGACAACATCATAAGTCACTTACAAAAGAC
AGCAAATGCTGTCTGAAATATCTGACCGCTTACGAAACTTATCCAGCTGC
TTCTTATGTTATGAATATCTTTTGTATTGAATAACATAATGACATTTGTT
TATTTTTATACAATTCCATGCTGTGCGGTTTAATTTTTCTTTCACAAACT
TCTGCGAACATAACATCACAGTTCTTCTCAAGGAGAATTTCAATAGACAT
ATTCTAGAAAATGATTTTCTATTCAGTGCTGCTATCACTGTTTTACAGAG
ACGGATGGTTGTGGTAGAGAGTGGAGCCCATGTGTGGACGACGCCTGGTG
TGAGGATGTGCCTGCCCCAGGGGTGGGGGCTGTGTGCCACTGCCCCCCTG
TGTCTGAGGGGAACGGGAGAAGGGAGGGGTCAGGTTGTTCAGGTAGGGCA
ATGTTATCCTTGTCTAGAGATTTTGAAGCCATGTTTGGTTAACCTGTTAA
ATTCATGATAATCAGTCAGCTGTCTATAAGCTCCTTTTAGAGAATATTTC
TTTCTGATATGAGCCTGAACAATTGCATGACCCTCACTTCAACTTTTGAC
CTTTTTTTCATTTTGACCTTGTAACGGCTAAGACTTTGAGTTATGAACAC
GTATTTTGCTTTGACATATAAAATTTTACTTGTTTCTACTGAATGTTGTC
CAGTTGTGTCTCCTGACTGCATGTAAAAATGTAACACGTTTTGACCTGTA
CATGGAAATCAGTGTTTACAAGTTGAAGGGGCAACCCAGTCGTCTTCTGC
TGAAATAAATAAATAAATAAATGAATACTACAGATGCCGAAATTTTCGCT
GTAATTTTATGTTCGTGGTTTTTGCGGCGACCGTTTCACCGCGAAGTTAA
AACCATCGCGAACATTTGTGTCCAATACTGTAGCAGTATCTGACTATAGC
GCTGCCGCAAACTTAATATTACCTCGAACACCAAATTTTCGCCTTAGCGC
GAAATAAAAACCACGCGAACTTAAATGCATTAACAGTAGTCTAAAAAGCT
GGTACAGATTGTTTGGTTTTCCTTCTCAAAGTATATGTCTTTGAAATATA
ATTCAAGAGTCCACATATGGTTGTTGTCATCCTTCTTGCAGACCTCAGCA
TCTGCAGCTCTGCACACAACCCATGTGTGGCAAATGCCACCTGTGATGAC
CAGGTGAACCCACCTGTGTGCACCTGTCCACCTGGCTGGCAAGGAGATGG
CAGGAGAGATGGCTTTGGCTGTGAAGGTAAGGCCAAATGCTACACGCATG
CCATATAGCTCTATACATAACTTTACTGAATAGCCAAAAAAGGAAAAAGG
TGGTGTATTTCAGTACTGTATTTCCATTTTATAATACATTGCTATGCAGA
ACTCTTGGTGGAGTCTTTGTTCTTTCATATCCCTGCAAAAATGGGTACCC
CAGAGCAGCTTACTAATTGCCCTCTTTTATATCAATAAATGGCTTGCTAA
ATGCTGACCACTGTAACTGACAATACTTTACCAACTTTTTCTGAGTAAGG
TTTTTAATTTTTCACGATGTACCATTGATCAAGCATGTAGATATGTTGTC
AGATGTTGTGCACAAAATCAGGAACTTTATTGTTGAATTGTCATACAGGA
CTTATTGAAGAGTTAAATGAGAAGTCAAGCCATTCACTAGTTATAGACAA
TTGCGTTCGTATCTAGTTTAGCCGCTTTTATACCTACAAATGTATTTTGT
ACCCTGTTCTTTTATGTATGTTATTTGCAATTAGCCTTCGGGCAGGAATT
TGCAATAAACTTATCATTATATTGATGTAAAATAATTAAATTTGCATTAT
CAACATTGAAATAGTCGGGACTTACCCAAAGTTTTGACGGACTCATGGAC
CTGACTACTAACATCTGTGACATGATGTTTAGCCGTTCATAATGTATTTT
ATCAACTCAGATGTACTTTCATGCTAAGAAAACAGTTTATATCTTTTGTT
GTCAGACATGGATGAGTGTGCAGATGACACCGCCATGTGTGAACAGACCT
GCACTAACGCACCTGGCAGCTTCAGCTGCGCATGTCAACAAGGGTTTATG
CTAAACGATGATGGCCGCACCTGCCAGGATGTGGACGAGTGCACTGTGGA
CAACGGGGGGTGTCAGCACCTCTGTGAGAACGAGTATGGGAGCTTCTACT
GTGAATGCAGGGATGGTTTCCAGCTGGGAAGTGATAGGAAGTCATGCCAA
GGTATGGGAAATTTACAGTCAACCATCTTATTACACTTTCTGCACCAAGG
AGAGATGCTTTTTGGTAAATGGTAATTTCTGATCAAACAAAAAAGTCATA
AAACTATAAACAGAGCAGAATATTTTGTTCTATCTGAGCATCTGTTTGTA
TCTGAATCACATTAAGAGGATTTCTCTATGTATTTCTGGAGACGAAAATG
AGTCACACTTTCAACATCAAGGAGAGATGCTTATTGAAAAATTGTACTTT
GCTAATCAAACAAAATAATGTCACAAAGCTATAAATATTTAGCAAAATAT
TTAGTGTGTACTATTTGAGTACCAATGTAAATCTTTTCGGTACATAGAGC
GATGCACATCTCCGTTTCAATAGCCCTTGGGCCACACAACTTTGTGCAAT
CACTACAGCAGGGGGCTAGTCTGCTGGCAATGTGTGTGTTTAACTACAAT
ACTCTTTCCCAAATGCTGAGTGCTAACCAGCATGTACTATTTATAAAGTT
TTTGGTATGGCTCAACTGGGGATCAAACACATGGCCAACAATATGCAAGG
CAAACACTCCAGCCACTAGGCCATTGTGCAGGTGCACCGATGTATATCTG
AATGTCTAACCGACTGTATTTCTGTAGATATAAATGAGTGCCATGAGGAC
CACTCCTGTAGCCAGGTGTGTAACAACACGGCCGGGTCCTACTTCTGCTC
CTGTTGGGACGGGTTCATACTGGCTGAGGACGGGTGGACTTGTAGAGGTG
AGTTAAACAACAGCTATTAGCATAAAATTATTATTATTATTATCATTATC
ATTATTATTAATGTTCATCCTGGCTTAGGATGGGTGGGCTTGTAGAGGTG
AACTAAGCAATATTTATGAACATAAAATTATCATTATTATCATTATTATT
ATTTTTATTATCATTTTTATTGCTATCATTATTTTTATTGTTATTATCAT
TGTGATGAAGATGCTTTATGATAGAAATTGAAAGCTCTGAAAACCTATTA
GATGTCTGATCATCATGAATTATCCTTGTTGTAGGGTTTAATTGAGTTGC
CTTTGAGAACGGCCATTCCACCTATAAATGCCACCTGTTGATATATTTAC
TTTTGTAAACTTTTTGTTTCCCAAATTGTTATTTTGTTTCAAAGATATTG
GACCTGTTTAACCTTCTTGAAGTTTTTGAAAATGAAAGAGAATTGTAAAT
TGTTGACAGAAGGCTAAAGATAAAAGTACATGACTGTATACATGAAATTA
ACATGGTAGTGTAATACTATTTTGACAGGTACAGTATGATTCTTTGGAAA
GATTTATATAAAGTGTTCATTTGATTGTGCCTGGAGCAAAACTGGTTCTG
TGCTCACTAGACTATTCAAATGTGGATGACTATTCAAGATATATTTCTGT
ACCCTCCCAAAACTGGTTCCGTGTTCATTCGACTTTTTAAATTGTGGATG
ACTAGTGAAAATACCTTTCTGTAACTTCTCAGCGGAGAACCCGTGTGCAG
ATGAGACAGCGGCAGGCTGTGATGAGATGAATGGTTGGTGCCGGACTGAG
GAGGGACGGGCTGTGTGTGGCTGTAACAGTGGGTTTATACTCACTCAGGA
TGGGAGAACATGTCAAGGTTAATATACCTTTGTATACCTTTATTTAATGT
AATAACTTATCTTTGGTTGATATTGTTTTTTTGGCCATTTGTATTCGCCA
CTGATCAGCCACTGTTATTGTTATTTATGTACTCATGATTCTGTTGATAT
GGACTTTTCATGTTAATTTGTCAACTTTAGTTCTGTTTAATTTCAATATT
TTGTTATCTTTGTTTGATACTGATTTTGTTATATTTATTTGCCAATGAGG
CTGTTATTACTATTATTTTGGATATTACTTATATTTACAAGTATTCCATT
TCTGTTTTCACCTTTACTTATTGTTTTGGATCCGTGGTTTACGTTCATTT
TCCTGGACTTTGATTTTCTCTTGTTTGTATTATGTGATTTTTGTGAAATG
CTAAAAAAAATATATATATATATACCTTTGTCTTGTGCCATGTTCCGAAA
CATCGTATGTAAACATACATTTGCATTCAAAGATGAAAGATGTCAAATGG
AACTCTGAAACGTCTGGCACTTCTCAATTTGTAATCCAGTTGACTGCATT
GCCTTCGTGATAACATTACATAAACTAGCTATAAAGATACATGCTAAACT
GTCAATGGGTCAGATCTGTCTTATTCTACTGTAAATGTCTTTAGGTTTGC
AGTGATTTAATTTCGCGGTAAGGTGGAAAACGGAGTGTTCGCAGTGGTTT
TGAGTTCATGGTTGAAACAAGTTGCGGTGGTTTAGCTTCGCGGCGAAGAT
CTAACTCCAAAAATTGCAAACATTAAACCACCGCTAAGATTTTAACAGTT
ACAGTTGTGTACTAGTCATACTGCCTGTGTTTTTCAGGGAGGGACATGTA
TAATGTTACATAATTTAAAAATTCAATACAAAGTCATCTTTGCATACTTG
ACATTATGATAACATTGTTTTCCAAATTCTAACAGATATTGACGAGTGTG
CTGATGACAACAGTTGCCATGACAATGCCACCTGCATCAATTTCCCTGGC
TCCTACAGCTGCAGCTGCGATGATGGTTACCAAGGCGATGGAATTACCTG
TTCTGGTTGGTCAACACTGTTCCAACTGTCAGATACATTTGCATGACATT
GTATTCAATATGATTTAATCAAGTTCTTGTCACATGGTATCAATGCATTT
TATTCAAGTAATAATCATAACATAAATGTATCGGATAGAAAAAATGTTTT
CAATCCCCAAAACCATTCTTTTTACAATAAATTAAAATGTAGATCTTTTC
TGGAACCTTCATAAAATAACTCCATTCTGAATATCTCTACATGAAATCTG
TATTTGTATTTAAGTGTATAGCCGGTATAACCGTCCTTTGTCGTAACTTC
GCAGGCATGCAGCGCGGTAAAAGCTGGCTATATTACAGGGATATGGTTAT
GATAAATTATCATATGCCTCAAATGGGCCAGTATCATATAGATTAGAATT
GAATAAAAGGAATATCATAGAAAAGAAAATAATAGAATAGAAATGAATAG
AATTGAATAGCATTTCAATAGAATCAAATAGCATAGCATAGAATAGAATT
GCGTAGAATGGAATAGTCATATAAGAACAGAATAGAATACAATAAAATAG
AATTGAAGAAGATTCATGATGACTATGATTATCCTGCAGATATCAATGAG
TGTGCAGAAGACCAGTACATCTGTGACCCCCTGAGGTCCACCTGTGTGAA
CCTGCCCGGGTCGTACCACTGTGACTGTCTGCC Coding sequence (CDS) from alignment at Sc0000036:1017366..1024998- >transcript:BL96285_cuf2 ID=transcript:BL96285_cuf2|Name=transcript:BL96285_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1428bp|location=Sequence derived from alignment at Sc0000036:1017366..1024998- (Branchiostoma lanceolatum)
TGTGAGCCCGGTTACCATGGTGATGGGAGACGGGATGGTAGTGGATGCAC
AGACATCAATGAGTGCACGGATGATGCAACACTTTGTGACGACAATGCCA
TCTGTACCAACACAAATGGGTCGTACCAATGCACCTGTAGGGACGGCTTT
GCGGGCAATGGAATCACCTGCTCAGATGTTGATGAGTGTTTAGATGGGTC
AGCTGACTGTCATGACCACGCCCACTGTCACAACCAGCCTGGGTCGTACT
TCTGCACATGCGCAGCTGGGTATGAGGGAGATGGCAGGACATGTGAAGAT
ACTGACGGTTGTCTGGAGGGTATCTGTGTACCAGAGGCTGTGTGTACGGA
TGTGCCTGCCCCAGGGGTGGGGGCTGTGTGCACCTGCCCCCTGGGGATGG
ACGGAGATGGCAGACAGGACGGAACAGCTTGTTCTGAGACGGATGGTTGT
GGTAGAGAGTGGAGCCCATGTGTGGACGACGCCTGGTGTGAGGATGTGCC
TGCCCCAGGGGTGGGGGCTGTGTGCCACTGCCCCCCTGTGTCTGAGGGGA
ACGGGAGAAGGGAGGGGTCAGGTTGTTCAGACCTCAGCATCTGCAGCTCT
GCACACAACCCATGTGTGGCAAATGCCACCTGTGATGACCAGGTGAACCC
ACCTGTGTGCACCTGTCCACCTGGCTGGCAAGGAGATGGCAGGAGAGATG
GCTTTGGCTGTGAAGACATGGATGAGTGTGCAGATGACACCGCCATGTGT
GAACAGACCTGCACTAACGCACCTGGCAGCTTCAGCTGCGCATGTCAACA
AGGGTTTATGCTAAACGATGATGGCCGCACCTGCCAGGATGTGGACGAGT
GCACTGTGGACAACGGGGGGTGTCAGCACCTCTGTGAGAACGAGTATGGG
AGCTTCTACTGTGAATGCAGGGATGGTTTCCAGCTGGGAAGTGATAGGAA
GTCATGCCAAGATATAAATGAGTGCCATGAGGACCACTCCTGTAGCCAGG
TGTGTAACAACACGGCCGGGTCCTACTTCTGCTCCTGTTGGGACGGGTTC
ATACTGGCTGAGGACGGGTGGACTTGTAGAGCGGAGAACCCGTGTGCAGA
TGAGACAGCGGCAGGCTGTGATGAGATGAATGGTTGGTGCCGGACTGAGG
AGGGACGGGCTGTGTGTGGCTGTAACAGTGGGTTTATACTCACTCAGGAT
GGGAGAACATGTCAAGATATTGACGAGTGTGCTGATGACAACAGTTGCCA
TGACAATGCCACCTGCATCAATTTCCCTGGCTCCTACAGCTGCAGCTGCG
ATGATGGTTACCAAGGCGATGGAATTACCTGTTCTGATATCAATGAGTGT
GCAGAAGACCAGTACATCTGTGACCCCCTGAGGTCCACCTGTGTGAACCT
GCCCGGGTCGTACCACTGTGACTGTCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000036 | genome | Sc0000036:1017366..1024998 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96285_cuf2 |
| Biotype | protein_coding |
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