transcript:BL96290_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96290_cuf2
Unique Nametranscript:BL96290_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96290_cuf2

>transcript:BL96290_cuf2-protein ID=transcript:BL96290_cuf2-protein|Name=transcript:BL96290_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=357bp
RIPKTGLSVEETFSEGFGNPRGIHLQRVPSVQSETNACTIENGGCQQLCL
VRPGGRTCACQNGATLQRDGLSCRLTGVRQATTSQPITSNLPTTPNTGQP
GGLSLDIKVGISVAGFALFVAVAAIFTVFQFVKKKRQQRAAERERQFGVN
NPAMDDDEVYDVIRDEGFISVAAFPPPVPPPLKRAENNYLDMTQLARGAP
NGYEVPSTLKQATPIDPMKNYIHKPGYQPDDENDYLDLNGVPTSKPPAPP
SDNNHDYTYPMRKTDPYQTLGGAYQQHHEYQGLRNKGTIHPQSKDTDHDY
THPMSKTDPYQALGWSNENHHEYQGLRKNQSQAQDAKHVYTQPNVVNIPD
PDYNHKM
Run BLAST on NCBI

mRNA from alignment at Sc0000036:904338..907701+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96290_cuf2 ID=transcript:BL96290_cuf2|Name=transcript:BL96290_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3364bp|location=Sequence derived from alignment at Sc0000036:904338..907701+ (Branchiostoma lanceolatum)
TCAGGATACCAAAGACCGGTCTTTCGGTGGAGGAAACATTCTCCGAAGGG
TTTGGAAATCCGAGGGGAATACACTTGCAGAGAGTTCCGTCGGTGCAAAG
CGAAACGAACGGTAAGAATGACAAATTAAAACTAAAACACGAAAATTACA
CCTGTATATATACACTTCCGTATGCGTGTGGAAATAGATTGTCATTGTGA
TTCAAAGAACAGACGAGAGCTTCATATATAAAGTACAGTCAGATTTTTAA
AAGGAATTTATTTGATATGTTAGAATAAAACAATAAAACCAAACAAAGCA
AGTAATCAAATCAACTCTATTGTCAGCCTGCACGATAGAGAATGGTGGGT
GTCAACAGTTGTGCTTGGTTCGCCCCGGTGGGAGGACGTGCGCTTGCCAG
AACGGCGCCACGCTTCAACGGGATGGGCTGTCCTGCCGACTGACAGGTTT
GTGACGCTGTTCTTTTTATTTTTTAGCGAAGCTTCAGGAGCGAGCTCATT
TAATTTTTCAGACATCTGTGTGGCCTACTTAATTTTGACAAAATTTATTT
TCAATAGGGGCCAGACTATAAAAGAGTAAAATCATCAGTATAACAAAATA
ACAAAGAAAATAGACTTATTACAAAATTGTGACAAATTAAGTAACAGAGG
ATTGTTGATACAGAAGTAACACAAGCAACCGAAAATTTACATAACCGTAA
ACATATCTTTTAATACATGAATACATATAAGAAAACAAATCAAAATCATT
ATCCGTTACTCATGTCCATTACCGGTTCAGGTCTGATTCATTTGAGAGGT
CAGAGGTCTTACATGAGAGGTCAGACGTCATTACACTATATGTACAGTTT
GCATGCTTTTCAAACTATGTGGAAGATTGAAAACTTTTTAGTGTTGAGAG
TTGCATGATATTATCTGGTCGTGTGTTGAGAGCTATGCTGCCCCGACGGC
TGACTAAGCTATGGGAGAAAGTGAGAGTGAGTGAGTGAGTGAGTGAGTGA
GTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGTGTGAGTGAGTGAGT
GAGTGAGTGAGTGAGTGAGTGTTGAGGTGGCTAGCCCCTCTATGAGGAAA
TGTGCGTTGTTTTGTTTTGTCGTGGTCATGATCGTATTTGGTGACATTTG
TTCCATCTTGACCTTTTCTTAAAGGCAACCAAAGCAATATTAGTGGCCAA
AAAATGAAGGAAAAAAATGCTGAAATCTTCATTGTAGTGATATTTGCAAA
CACTGTCTAGAACATTTGTGCAATAACTTCATACTTTGAGCATTTAAAAA
ACGTGCAAAAACGTGCCGTACTATGATCCCTTTAGTTTTGCGAGCCTACA
AAAACGATTTTCAGTGAGTTCTCATATTACAATAAGTCATATTTTTGCAT
CATGGACTTCGCTATACATTGTGAAAGTGTTGTTTGAACTAATCATGTTT
AGAAATGGCTAAATAAATTGACTTTCAAAATCCGACTTTCAGGCCCTAAT
ATTGCTTCGGTTGCCTTTAAACAACCTTGATCCAAACGATCCCCATTCCC
GTACAGGTGTTCGGCAAGCTACGACTTCCCAGCCAATCACAAGCAACCTA
CCGACCACTCCGAATACAGGCCAACCGGGTGGCCTGTCTCTCGACATCAA
GGTTGGGATATCAGTTGCTGGGTTTGCGTTGTTCGTCGCCGTCGCTGCCA
TCTTTACCGTGTTCCAGTTTGTTAAGAAGAAACGACAACAACGTGCGGCC
GAGCGAGAGCGCCAGTTTGGCGTCAACAATCCTGCAATGGATGATGACGA
AGTCTATGACGGTAAACTGTCTAACTTTACGCACAAAAAACAACAACACA
TATACTCGAGCAAATGGGTATGATTTTGGAAACGGTTAGACATTTCAGGT
AGCCACCACTACTTTTCATCAGTGTCACTAAGTAAGATCTGTCGATCAAC
AGGTTTTTAATTGATTTGCAATCAGTAAAATAGTATACTATGAAACAAAA
TTGGTATAAGCCCATTCGTTATTCCGACTACGCATGCGCAGTGTCAAAGG
TGAAGGCCCCTGACTTGTAAACAGTTCCTGCAATTGTGTCGACATTGTCT
AGATTTACATAACAATGCGCAGACGGGCTTTGTTTACGTCTCAGGGATCT
TTATCAACGTTATGTATTACTAACTTAAGGTACGGTTGAAGGGTGGCTGA
GGATTTTTGGGATGTTATTAAAAAAAAAAAACCCTTTATTAAGCTTAATA
AACCTTCCTCAACCTTAACTTTTCTTTCAGGTAGTACCTTATAGCAAGGT
GATAATTTGTGCAAATTAGTATGACGTCATGATTACGTCATCAAGATTTA
CAAGGCTATGCTCAATTTTTTAGAAAAAAGGCTCTCCTTGGCTTGTACTT
CGATGTATCAATATAACTTTGCAGGAATGTACATGATAGTAATACATCAA
GAATTATGCGTGTCAACGAGTATATTTTGAAATGATGATTTTTGGCGATT
TAAAAAAAAAATTCAAACAAATTCGCCAAAAATGGTTATCTGCAGAACAT
ATCTCTACAGGTCATAATCAATTATTGAATTTTTTTTTCATTTATGACTC
TGATACGTTTGGTTTTGTTCCTTTGAGTTTTCTTACCGTTTTCACTTGAT
TGATTCAGATGTATTCTAATTTCATTCTTTACAGTGATAAGGGACGAGGG
GTTTATTTCAGTGGCCGCCTTCCCTCCCCCGGTTCCACCACCGCTAAAGC
GCGCAGAAAACAACTACCTGGACATGACCCAGTTAGCTAGAGGAGCCCCG
AACGGCTACGAAGTCCCCTCAACCTTGAAACAAGCGACACCTATCGATCC
CATGAAGAATTACATCCATAAGCCTGGCTACCAGCCTGACGACGAAAACG
ACTACCTGGACTTGAACGGTGTTCCCACAAGCAAGCCACCTGCGCCACCT
AGCGATAATAATCACGACTACACCTACCCGATGCGGAAAACCGACCCGTA
CCAAACCCTGGGCGGTGCATATCAACAGCATCATGAGTATCAGGGTCTGC
GCAACAAAGGTACCATTCACCCACAGAGCAAGGACACCGATCACGACTAC
ACCCACCCCATGAGCAAAACCGACCCGTACCAGGCCCTGGGTTGGTCCAA
TGAGAATCATCATGAGTACCAAGGTTTGCGCAAGAACCAATCACAGGCCC
AGGACGCTAAACACGTCTACACTCAGCCTAACGTCGTCAATATTCCGGAT
CCGGATTACAATCACAAGATGTAAAGATCTCTTGAGCACACAGAGTGGGA
TATCGAACCTATCTTGTATATATATGCAGTGGGTTATTTGTATGCCTGGT
ACGGTGTTGTTCAT

Coding sequence (CDS) from alignment at Sc0000036:904338..907701+

>transcript:BL96290_cuf2 ID=transcript:BL96290_cuf2|Name=transcript:BL96290_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1074bp|location=Sequence derived from alignment at Sc0000036:904338..907701+ (Branchiostoma lanceolatum)
AGGATACCAAAGACCGGTCTTTCGGTGGAGGAAACATTCTCCGAAGGGTT
TGGAAATCCGAGGGGAATACACTTGCAGAGAGTTCCGTCGGTGCAAAGCG
AAACGAACGCCTGCACGATAGAGAATGGTGGGTGTCAACAGTTGTGCTTG
GTTCGCCCCGGTGGGAGGACGTGCGCTTGCCAGAACGGCGCCACGCTTCA
ACGGGATGGGCTGTCCTGCCGACTGACAGGTGTTCGGCAAGCTACGACTT
CCCAGCCAATCACAAGCAACCTACCGACCACTCCGAATACAGGCCAACCG
GGTGGCCTGTCTCTCGACATCAAGGTTGGGATATCAGTTGCTGGGTTTGC
GTTGTTCGTCGCCGTCGCTGCCATCTTTACCGTGTTCCAGTTTGTTAAGA
AGAAACGACAACAACGTGCGGCCGAGCGAGAGCGCCAGTTTGGCGTCAAC
AATCCTGCAATGGATGATGACGAAGTCTATGACGTGATAAGGGACGAGGG
GTTTATTTCAGTGGCCGCCTTCCCTCCCCCGGTTCCACCACCGCTAAAGC
GCGCAGAAAACAACTACCTGGACATGACCCAGTTAGCTAGAGGAGCCCCG
AACGGCTACGAAGTCCCCTCAACCTTGAAACAAGCGACACCTATCGATCC
CATGAAGAATTACATCCATAAGCCTGGCTACCAGCCTGACGACGAAAACG
ACTACCTGGACTTGAACGGTGTTCCCACAAGCAAGCCACCTGCGCCACCT
AGCGATAATAATCACGACTACACCTACCCGATGCGGAAAACCGACCCGTA
CCAAACCCTGGGCGGTGCATATCAACAGCATCATGAGTATCAGGGTCTGC
GCAACAAAGGTACCATTCACCCACAGAGCAAGGACACCGATCACGACTAC
ACCCACCCCATGAGCAAAACCGACCCGTACCAGGCCCTGGGTTGGTCCAA
TGAGAATCATCATGAGTACCAAGGTTTGCGCAAGAACCAATCACAGGCCC
AGGACGCTAAACACGTCTACACTCAGCCTAACGTCGTCAATATTCCGGAT
CCGGATTACAATCACAAGATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96290gene:BL96290Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96290_cuf2transcript:BL96290_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96290_cuf2-E1BL96290_cuf2-E1-1564476830-191830Branchiostoma lanceolatumexon
BL96290_cuf2-E2BL96290_cuf2-E2-1564476830-191832Branchiostoma lanceolatumexon
BL96290_cuf2-E3BL96290_cuf2-E3-1564476830-191834Branchiostoma lanceolatumexon
BL96290_cuf2-E4BL96290_cuf2-E4-1564476830-191837Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000036genomeSc0000036:904338..907701 +
Properties
Property NameValue
Transcript idBL96290_cuf2
Biotypeprotein_coding