|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96379_cuf43 >transcript:BL96379_cuf43-protein ID=transcript:BL96379_cuf43-protein|Name=transcript:BL96379_cuf43|organism=Branchiostoma lanceolatum|type=polypeptide|length=708bp
ELPLKIVKGLEDQEIWEKQMATYEVELNKPDMNVFWFRENVRIVPNDEIE
VRSKGNVYTLVLHKRKLSDAGEIRFSVGELASTAQLIVKELPVEVGRELQ
DQEVWEDETARFEIELSRQITEFHWYKKGEELQTGASVDFLQDGNVYKLV
LMDCKIEDMGTIKFETEDRKSSATLVVKELPVEITRQLEDVEVYERDSAT
FEVELNKKEMQVQWFKKGVLLEDSGRRTPGRVTPHESVDIMCDDYKYKCT
LHNCQLEDMGEIKFLVNSHKAKAHLRVKELPIGFLLGLKDQRAVERDDMA
KFTCTMSKKGQVAKWFFESEPCEENGKYQFEVDGTAYSLIIRDIKLTDAG
KYTCASKDSETTANLVVDPLPLKIEKDLEDVEVWEKETAVFQTELNHPDR
PIVWFKKGQQLEASDTVQMTSEGMKYFLTIRDAQLTDMGTIKFQVEGLKS
AATLLVKELPYTFTLELEDQRAMERDPLSTFTCEMSKPDIEATWYRGEEK
LKAGEKYEMEREGCVHRLLIRGIRLDDASSYTCANKDNKTTAALVVDALP
LEIVRDLEDVEVWEKETATFAIEMNHEGREVEWYKKGGKCEKSDTVDMKS
EGYKYYLVIQDCQLSDMGTVKFQSDRQKSSATLLVKELPATFTKQLQSCQ
RLEFQQAVFECETSRGTAQCKWFRKGAAIEPSDKYEIRASDRDHMLIVHD
VRFEDEMD Run BLAST on NCBI mRNA from alignment at Sc0000008:5461032..5468396+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96379_cuf43 ID=transcript:BL96379_cuf43|Name=transcript:BL96379_cuf43|organism=Branchiostoma lanceolatum|type=mRNA|length=7365bp|location=Sequence derived from alignment at Sc0000008:5461032..5468396+ (Branchiostoma lanceolatum)
AGAACTTCCGCTTAAGATCGTTAAGGGTCTTGAGGACCAGGAGATCTGGG
AGAAACAGATGGCCACCTACGAGGTGGAGCTGAACAAACCGGATATGAAC
GTGTTCTGGTTCCGGGAGAACGTGCGCATCGTGCCCAATGACGAGATCGA
GGTCAGGTCAAAGGGCAACGTCTACACCCTTGTGCTGCACAAGCGGAAGT
TGTCAGACGCGGGAGAAATCAGGTTCTCAGTGGGAGAGCTCGCCTCCACC
GCGCAGCTCATCGTCAAAGGTAGAAAAAGGCTTCGCTCCTGAGGCGTCGC
CAAAAGCAGACCTCCGTGCTTGCTGGAGGGAAACTGCCGCTCACTGATCA
CGCTAACAACATGCGCTTCACAAACGTCTTTACGATGTAGCTATTGTATG
ATACTCAAGTCTTATTGACCAGCGCTCATCCTTGAACTTGCGATCACGCT
AACCATATGCGCTCTATAAACAGGTTTCTTTAAGATGTAGCAATTGTATG
ATAATTTAGTTTTATTGACAAGCGCCCATTCTTGAACTTACACTCTTGCG
ATCACGCTAACCATATGCGCTCTATGAACTTTTCTTAGACGTAGTTTGAG
CTTCATAATTTTCTTGTCATTGCTGACAATCGTTAGAAATACTATACTTT
AGATTTCTTGACCAGCGCTCATCTTTAAACTTTAACTCTTGCGCTCATGC
TAACTATCTGCGCTTTGTAAACCTCTCTCTTAGACGTAGTTTCTTTCACC
ATAGACTTTTGCTGATCCAGACAGTGGTATACACTATTTCTGATGATTTC
TTTACCATGGATCTTCTTTGACTTGCGTTCTAGCGCTCTTTCTAACCACC
CGCGCTCTATTAGTTTGTAGATGTTGATCCTCAATTTTCCCACATTTCTT
CTGAAGTCCTACCACTGTTACATGTCAATTTTCGACATTTTTTTCTGCAG
CCCTATAATTGTTACATATTAACTTGCGACATTCATCATGTAGCCTTATG
ATTGTCACATCTCAATTTGCGCCGTTTCCCGCCTATAGAGCTGCCCGTCG
AGGTTGGGCGCGAGCTGCAGGACCAGGAGGTCTGGGAGGACGAAACCGCG
CGCTTCGAGATCGAACTCTCGCGACAAATCACGGAGTTTCACTGGTACAA
GAAGGGCGAGGAGCTGCAAACCGGCGCCTCCGTCGACTTCCTTCAAGACG
GCAACGTCTACAAGCTGGTCCTCATGGACTGTAAGATCGAGGACATGGGA
ACCATCAAGTTCGAAACGGAGGACAGAAAATCCTCGGCGACGCTGGTGGT
GAAAGGTACACACGAGTGCCTCAACAAGGCGCTGACCTTTGGGCTGCTAC
CTGCATTCGCTCTGCAATAGCGAAGCTGTTAAATCTGTCGCTTCCAAACT
ATGAGATTGAATCCGCTGCTACCTGCATTCGCTCTTCAATAGCGTAGCTG
TTAAATTTGTCGCTTCCAAACTATGAGATTGAATCCGCTGCTACTGCTTT
GATATAGAAGGCTTCTAGAATAGACTACATTCTTGTAGTGGTAGACCATG
GATAACTGCGTGGTCACTGCAGGCAACTGAAGAATCGTTAGCCAGTTTTG
ATTAAGCGCACTTTTCAAATTACTGCCGCACGCTATTGGCAAAACTTTGC
ACATCATTAGAGACGCTCAATCATTGCAGCAGCTCACTTCTGGCTTGCGC
TGTTCAGAAGAAGCCTTTGAATTGTGTCCATTATGAAGACTACAACCCAC
CTCACTCCTTCCATAGCGGGCCCTATAGTGGCTGGTACCAAATGAAGGAG
TAAGATGGAGTTAAAAATTCAGTCAACAACTTTTGATAACGATGTCTATG
TTGAGTCTGCTCACAAAACATTCTAGACACAACATTACGTCTTTGAAATG
GACACAAGTTCCCACCGCTTTGTGGGGCTGCTTGCAGCTTGTACCATTGC
CAGTGCATTGCTGAGCTCTTTCCACAAGCACACGACCCTCATTACAGGTT
TGCGATAGCGAAACCTGTTCTGTTACCATTTCATCATGCCTTTCCACCCC
CCGCAGAGCTCCCCGTGGAGATCACGCGCCAGCTCGAGGACGTGGAGGTG
TACGAGCGAGACTCCGCCACCTTCGAGGTGGAGCTCAACAAGAAGGAGAT
GCAGGTTCAGTGGTTTAAGAAAGGCGTACTTCTTGAAGACAGCGGAAGGC
GGACGCCTGGTCGCGTCACGCCGCACGAGTCGGTGGACATCATGTGCGAC
GACTACAAGTACAAGTGCACGCTGCACAACTGCCAGCTGGAGGACATGGG
GGAAATCAAGTTCCTGGTCAACTCGCACAAGGCCAAGGCGCACCTGCGCG
TCAAAGGTACCGTGCTCTGTCGCGCACAGACACGCTGCGTTCCGCTGATG
CACTTTTACGCCTGAATTTGCACAAGGTTGCAAAATCGTTCATTCACGCT
AGAATGATACTTTCTGCGTTGCGCTCTTTGTTGTTTGTCGTTGTTTACTG
TGTTCACTTAATCTCCAAGCAGATCTACACGGTGACAAAATCCAGACTGA
AGCTTATCTGGCTGACTGGAGCTTCTCTGGCAAACATATACGATTTTGGC
ACCATGTAGATCTGCTTGGAGATTAGTGTTTACTGTCTCTTCATCCGTTT
CCCTCTCTGTCTGCGCGCTCTCAGAGCTGCCCATCGGCTTCCTACTGGGG
CTGAAGGACCAGCGCGCTGTCGAGCGCGACGACATGGCCAAGTTCACCTG
CACCATGTCCAAGAAGGGCCAGGTGGCCAAGTGGTTCTTCGAGAGCGAAC
CTTGCGAGGAGAATGGGAAGTACCAGTTTGAGGTGGACGGCACGGCCTAC
AGCCTCATCATCCGGGACATCAAACTTACGGACGCCGGGAAGTACACATG
CGCATCTAAGGACAGCGAAACCACCGCCAATCTGGTCGTGGACCGTACGT
ACAGTCTTGACCCTTGACATGACCACTGGCGCTGTAGATCTAATGACCTC
TGACGTGACCCCACATGTAGCAGATCTAACGACCCTTGACACGAGCTCTG
ACACCTTTATGCTACATCAGACCAGAAAGCTAACTAAAGACGGCCAAAGT
AGTGATCAGCTGACGGTAGCGCACTTTGACTTGACGGAAACGCTTCCAAA
GCGAGCGACTGATTTTGCCTTTCTTAACATCCGTACTGCGGGCGGTGCAT
TGCTAATACGACTTCTGCCATATTTCTGTTAAGGCGTATGCATAGGGCTA
TTGCTTCAGGCAAACCAAGGTTTAAACCTACTTGGGCAAACTCAGCTAAA
CCCCTTCTTTGAGTTTGCTTCGCTTAGTTCTACTCATATTCTTTAGCCTA
TAGCAGACTACTCTAGCTTTCTTCCTTCCTACATACTACCCTCTCTGCTT
TGCAACTGCGACTACTTATCTGTATATAAATTTACTATAGTGGACTCCTG
TAACACTAAGTGTTCAACTGCGACGCCTTAAGACTATGCAAGCGCATGCA
GGCAAGCGACAGAAGCACACAGCGTAACACAATGCCTATGTGTAGTAACA
GCGACTTCCCTATTATCTTACAGGGGACTGTACATTGCTCTAACAACCTC
TTTTGTTATCTACATCTCCTATTTGCAGTCCCTGCTCTTTTAGGCGCACT
CGAATTTTATCCTTTTGTCATCATGATCTCTAGGGTAAGGTAACAAAATA
CGACTGTCAAATCGCATAAGCACTACTACGTACATGTAGGATATAACTGC
ACTTCTGAAGTTGCACTCCTACTGCGCAAAGATATGACAACTATAATAAG
TAGGCTGAATACGTACACTTTAAGTATCATCAGCATTACTGGCGTCTTAA
GTAGATCACGCCTTTAGGGTCTCATGACTTTCCCACCCCTCAGCGCTGCC
ACTTAAGATCGAGAAGGACCTCGAAGACGTTGAGGTCTGGGAGAAGGAGA
CTGCCGTCTTCCAGACGGAGCTGAACCACCCGGACCGGCCGATCGTCTGG
TTCAAAAAGGGCCAGCAGCTCGAGGCGTCTGACACGGTACAGATGACGTC
AGAGGGCATGAAGTATTTCCTGACCATCCGCGACGCGCAGCTCACAGACA
TGGGGACGATCAAGTTTCAGGTCGAGGGCCTGAAATCTGCTGCGACCCTG
CTTGTCAAAGGTAGACCCACGCAAGGTTGCCGTGACAACGGTTGCCATGC
CAACCGCTGCAAAGCAGAAGCGATGCTACAATGCACTTTGCATTGCTATA
CGCTCAGGCTGCCAAATATCGTTAAAGTTGCACTACGCCATAGTAACGTA
TGCGCACTTAGTATACCTACCTAGTAGCTATTATATCTAGCTCACCAACT
CTACACTTGATGAAACAAGTTTGTAGGAATACTGCAGTTTTGGGAATGGC
GTTTAAAAAGCACGAACTAGAAAGACATAGCAATTAACTATCTATTAGAA
GTTTCTAGAATTCACTGAGGAAGTACATTACGCATGCGCGTCTTTAGAGT
TGTTCAAATAAGAAGTGGTGCATGCGTGCGTTCAAAGCTTTCCAGAAGGG
CGAGCACTGCGTCGACTAGCTGTTGCGCAAGCGCCGGATTTGCACAATAT
ATGCCACTGCTGGTCCGTTTGTGACCAATTCGTTTCGAACGTTAATACTC
TTAAGTAGCAGCATCACCTACTAACCATCCAGTTCATATCCTATTCATTG
TCTCTCCACGTAATCTCCAAGCAGATGTTGGAGGGCAAATTCGTAACGTT
TTGTAGCTCTGGGCCATTTCAAATGGCTATCCTACAGTTAAACCTGGTCA
GGCAACCACCTCCAGTCACAAGCCATATTAAAACAGTCCCGTACATTTTT
ACGTAGTTAACCACACCCTGACCAGAGCTACCACCTGTCATCAACGACCA
TATTCCCTCAGTCCGTTGGGTGGTTGCCGAATCCAGGTTTGGCTGTATCA
GAGCGTGGGCTATTAAACGTTACGAGAATGCTTTACGACATCTGCTTGTA
GATTATACCTCCACGTGGTGACTAACCCATTACGTGTTCACCAGAACTCC
CCTACACCTTCACCCTCGAGCTGGAGGACCAGCGAGCCATGGAGCGAGAC
CCCCTCTCCACGTTCACGTGCGAGATGTCCAAGCCCGACATCGAGGCGAC
GTGGTACCGCGGCGAGGAGAAGCTCAAGGCGGGGGAGAAGTACGAGATGG
AGCGTGAGGGCTGCGTGCACAGGTTGCTCATCCGGGGCATCCGCCTGGAT
GACGCCAGCTCGTACACATGCGCTAATAAGGACAATAAAACGACGGCGGC
GCTCGTTGTGGACGGTGTGTATCACTAGCAAAGCTCTTCGTTAGGTCCTT
GCTACCTTTGCAATTCCCAGCTTCCTGTGTTGACCCCCTGCGTCGCACGT
TTTCCTCAGATGGCGTTTGCTGCCATCAATGACTTCCCTTTATGCCTCCC
GATGTTCCCTCCTCTTCCCTTCCTTCCCCCTACCCTTCGTCCACAGCGGT
TTACTGGTATCGTGGCGTATTCCTCTCCTTTGCCAATGTCTTCCCAAGGC
GATTGGTGTCTGAAGACAATTGTCTTCGCCTGTCCTGCCTCCTTTCCAAG
CATGACCCCATCTGTAGCTATTTATCCCAACCTCCCTGTGTCCTACCCCA
GCCTCAGATGACCCCCAGTACCCTACTCCTCTTCCTCCCTTTCCTTACGC
ATACTCTTGACTCCCGGCAAGTTTGCGGCAGCTCTGCTCCATCTCGGCAA
TAGTTCCCGGCCCCCCGCTGCAACGCCGCTCTCCCTCCCTTGGCAGTCTT
TTCTAGCGATCACTTTTTCATCATTTGTGTATACATTCTCTCACTTTCAA
TTGTCATTTCATTTGAATTCATTCACTTTGTCGTCATTTGTGTATTCATT
TTTTCACTTTCAATTGTCATTTCAATTGAATGAAGGCTTTTCTTACACAA
CCGTTTTATTCAACCGACGTTTCGATGACAGTCTGTTAACCTTCACTGTC
AGAATTGCCCTGAGGAAGGTGACAGAGGGTCACCGAAACGTCGGTTGAAT
AAAACGGTTGTGTACAAAAAGTATTTTTATTCAGTGACTTCATTGAATTC
ATCTTTTACACCTGTGATAACACATTATGTCTGTTTCTACATATCTCTTC
TTCATATCCATTCTTCATGTCTGTTTACACTGTCGAGCGAGCAGCTGAAG
GGTAAGGCGTCACGTTAACATGATTTCTCACACGGCCTTTCCTCCGCTCT
TGCAGCGCTTCCTCTGGAGATCGTGCGCGATCTCGAGGACGTGGAGGTCT
GGGAGAAGGAAACCGCAACGTTCGCCATAGAGATGAACCACGAGGGCCGA
GAGGTCGAGTGGTACAAGAAGGGCGGCAAGTGCGAGAAGAGCGATACCGT
CGATATGAAGTCCGAGGGGTACAAGTATTACCTGGTGATCCAGGATTGCC
AGCTGTCAGACATGGGGACGGTCAAGTTCCAGTCTGATCGCCAGAAGTCG
TCCGCGACTCTGCTCGTGAAAGGTACCCCGTGCAACATGTCCGCTGGCTC
CGTCCTGTCCGCTCGTCGCTTATCGCTCCTAGATGCTACAACTTGCTTAA
GAGTCTTGCGCTAGTCTATCGCTCCTAGTTTCTACAACTTGCTTGCAAAT
GTTCCTGACAAATGTTTACTGCCGACCTGCATCGCTTAAAATATAGGCGT
TAGACAACTTGCTCAAGAGTCTTGCGCTAGTCTATCGCTCCTAGATGCTA
CAAATCTTGCTGCTACCCTAGTTCATGAGGATTCAGCTAATAGATATGCA
AGGCTAGTTTACTCACTGCCAAGTAGCTACAGCAATCTGCATGGAAATGC
GAACTTTCGCCTTTAAGTTTGTAGTTCCGCTTGCGTCGAGTCATTAGAAA
GCGTCGCTGCCCTTACATACCCTGCAACTGTGAATGCGACTTCCCTGCTT
CTGATGATGATGATCCAAAGTATTCAGCAGCTCAGGTAGTTGTAGAAACA
ACCTCTGGCTGCATTCAGTCATACCCTGCTTCTAGTGCGCCCAATTGTCA
ACACTCACTCTGTCTTCTTATTCTCACAGCTACTGAAGTATACCGCAACT
CTGTACACCATTATGACAGGGACTTAAACTTCATCTTTCTTCCCGAACAG
AGCTGCCGGCGACCTTCACCAAGCAGCTACAGTCCTGCCAGAGGCTGGAG
TTCCAGCAAGCGGTGTTCGAGTGCGAGACCTCGCGCGGAACTGCACAGTG
CAAGTGGTTCCGCAAGGGGGCGGCCATCGAGCCCAGCGACAAGTACGAGA
TTCGCGCCAGCGACCGGGACCACATGCTCATCGTGCACGACGTGCGCTTC
GAGGACGAGATGGAC Coding sequence (CDS) from alignment at Sc0000008:5461032..5468396+ >transcript:BL96379_cuf43 ID=transcript:BL96379_cuf43|Name=transcript:BL96379_cuf43|organism=Branchiostoma lanceolatum|type=CDS|length=2124bp|location=Sequence derived from alignment at Sc0000008:5461032..5468396+ (Branchiostoma lanceolatum)
GAACTTCCGCTTAAGATCGTTAAGGGTCTTGAGGACCAGGAGATCTGGGA
GAAACAGATGGCCACCTACGAGGTGGAGCTGAACAAACCGGATATGAACG
TGTTCTGGTTCCGGGAGAACGTGCGCATCGTGCCCAATGACGAGATCGAG
GTCAGGTCAAAGGGCAACGTCTACACCCTTGTGCTGCACAAGCGGAAGTT
GTCAGACGCGGGAGAAATCAGGTTCTCAGTGGGAGAGCTCGCCTCCACCG
CGCAGCTCATCGTCAAAGAGCTGCCCGTCGAGGTTGGGCGCGAGCTGCAG
GACCAGGAGGTCTGGGAGGACGAAACCGCGCGCTTCGAGATCGAACTCTC
GCGACAAATCACGGAGTTTCACTGGTACAAGAAGGGCGAGGAGCTGCAAA
CCGGCGCCTCCGTCGACTTCCTTCAAGACGGCAACGTCTACAAGCTGGTC
CTCATGGACTGTAAGATCGAGGACATGGGAACCATCAAGTTCGAAACGGA
GGACAGAAAATCCTCGGCGACGCTGGTGGTGAAAGAGCTCCCCGTGGAGA
TCACGCGCCAGCTCGAGGACGTGGAGGTGTACGAGCGAGACTCCGCCACC
TTCGAGGTGGAGCTCAACAAGAAGGAGATGCAGGTTCAGTGGTTTAAGAA
AGGCGTACTTCTTGAAGACAGCGGAAGGCGGACGCCTGGTCGCGTCACGC
CGCACGAGTCGGTGGACATCATGTGCGACGACTACAAGTACAAGTGCACG
CTGCACAACTGCCAGCTGGAGGACATGGGGGAAATCAAGTTCCTGGTCAA
CTCGCACAAGGCCAAGGCGCACCTGCGCGTCAAAGAGCTGCCCATCGGCT
TCCTACTGGGGCTGAAGGACCAGCGCGCTGTCGAGCGCGACGACATGGCC
AAGTTCACCTGCACCATGTCCAAGAAGGGCCAGGTGGCCAAGTGGTTCTT
CGAGAGCGAACCTTGCGAGGAGAATGGGAAGTACCAGTTTGAGGTGGACG
GCACGGCCTACAGCCTCATCATCCGGGACATCAAACTTACGGACGCCGGG
AAGTACACATGCGCATCTAAGGACAGCGAAACCACCGCCAATCTGGTCGT
GGACCCGCTGCCACTTAAGATCGAGAAGGACCTCGAAGACGTTGAGGTCT
GGGAGAAGGAGACTGCCGTCTTCCAGACGGAGCTGAACCACCCGGACCGG
CCGATCGTCTGGTTCAAAAAGGGCCAGCAGCTCGAGGCGTCTGACACGGT
ACAGATGACGTCAGAGGGCATGAAGTATTTCCTGACCATCCGCGACGCGC
AGCTCACAGACATGGGGACGATCAAGTTTCAGGTCGAGGGCCTGAAATCT
GCTGCGACCCTGCTTGTCAAAGAACTCCCCTACACCTTCACCCTCGAGCT
GGAGGACCAGCGAGCCATGGAGCGAGACCCCCTCTCCACGTTCACGTGCG
AGATGTCCAAGCCCGACATCGAGGCGACGTGGTACCGCGGCGAGGAGAAG
CTCAAGGCGGGGGAGAAGTACGAGATGGAGCGTGAGGGCTGCGTGCACAG
GTTGCTCATCCGGGGCATCCGCCTGGATGACGCCAGCTCGTACACATGCG
CTAATAAGGACAATAAAACGACGGCGGCGCTCGTTGTGGACGCGCTTCCT
CTGGAGATCGTGCGCGATCTCGAGGACGTGGAGGTCTGGGAGAAGGAAAC
CGCAACGTTCGCCATAGAGATGAACCACGAGGGCCGAGAGGTCGAGTGGT
ACAAGAAGGGCGGCAAGTGCGAGAAGAGCGATACCGTCGATATGAAGTCC
GAGGGGTACAAGTATTACCTGGTGATCCAGGATTGCCAGCTGTCAGACAT
GGGGACGGTCAAGTTCCAGTCTGATCGCCAGAAGTCGTCCGCGACTCTGC
TCGTGAAAGAGCTGCCGGCGACCTTCACCAAGCAGCTACAGTCCTGCCAG
AGGCTGGAGTTCCAGCAAGCGGTGTTCGAGTGCGAGACCTCGCGCGGAAC
TGCACAGTGCAAGTGGTTCCGCAAGGGGGCGGCCATCGAGCCCAGCGACA
AGTACGAGATTCGCGCCAGCGACCGGGACCACATGCTCATCGTGCACGAC
GTGCGCTTCGAGGACGAGATGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000008 | genome | Sc0000008:5461032..5468396 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96379_cuf43 |
| Biotype | protein_coding |
|
