transcript:BL96389_cuf68 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96389_cuf68
Unique Nametranscript:BL96389_cuf68
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96389_cuf68

>transcript:BL96389_cuf68-protein ID=transcript:BL96389_cuf68-protein|Name=transcript:BL96389_cuf68|organism=Branchiostoma lanceolatum|type=polypeptide|length=283bp
KVVARDAIEPPGPPSAPEITEICKDAIGFAWEPPKYDGGSAITGYIIERR
EKQSRRWIKLNREAVKKREYRSEGLLEGFEYDFRVRAVNQAGTGDPSEPS
VPVRAEEQISPPRNLRVIDYSRSFVTIAWEPPEFDAGSKILGYFIWRRNI
EFKGWAPCNEKIWTDRRFHIKALTENKKYLFMVKAKNAAGMISLPATIGP
VETKDEFEPPKILLSETFKDVITVKAGETVSVNINFTGRPRPRATWEKDD
STLTLRDRIRVETTPENSLLTLEKTERADTGKY
Run BLAST on NCBI

mRNA from alignment at Sc0000008:5566505..5570546+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96389_cuf68 ID=transcript:BL96389_cuf68|Name=transcript:BL96389_cuf68|organism=Branchiostoma lanceolatum|type=mRNA|length=4042bp|location=Sequence derived from alignment at Sc0000008:5566505..5570546+ (Branchiostoma lanceolatum)
AGAAGGTGGTGGCCAGGGACGCTATTGGTGAGTACAAGGGAGTCCCGTTA
TTTTATAGCTGTCTGAACGGTTGATGATATCACAGGTTGCATAGTTGAAG
GGCCAGGGACGCTATTGGTGAGCACAAGGGAGTCCCGTTATTTTATAGCT
GTCTGAACGGTTGATGATATCACAGGTTGCATAGTTGAAGGGCCAGGGAC
GCTATTGGTGAGTACAAGGGAGTCCCCAGTTGTCTGAAACATTGAGTTGG
CTGTATGATTAAAGGGCATAGAAACAACCCTTAGAAAATCGTGGATGACA
CAACATTTTTAGAAGCCCATGCTTGTATATGTTGCAAAGAAAAATCATGG
ATAAAAATGTAGCCTTAATGAATGAATGAAGACTTCTGGTTGAGTTGTTC
TTACATGTAATTACAGTCCAACATGTACTCAGAACAACCTTGGCATCACG
ACATTCAAGACATTATTTTCTGGTCTGTTACAATACTTTACCCATCACCC
TAAGTGTTACAAATTCTGCCTATACAGTGAAGTGAGCACCTGGCTATTGT
GATCATTTATGCTAGGGTCACATTTCCAATCCGGGGCCCAGCCGGGCAGT
CTTTTGGAACAAAAATTATGATATAAAAAGACAACCAAAACACTAAACGT
ACGCAAAATTATCTAAGAGCATAGCTTGTGCAAATTTATTGACATACACT
TTGATTTTTCGTTTCCGCAAACAGCCCGGCCGGGCCCCGGTTAGGAAATG
AGACCTTAGCATTACCAGTAGTTTTAGACAGGTTTGACCATAAATGAACA
TACTTGTAACCATCGTCACCGTCTCTTGCCCCACAGAGCCCCCAGGCCCT
CCCTCTGCCCCTGAGATCACGGAGATCTGCAAGGACGCGATCGGGTTCGC
CTGGGAGCCGCCCAAGTACGACGGCGGCAGCGCCATCACCGGCTACATCA
TCGAGCGGCGCGAGAAGCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAG
GCCGTCAAGAAGCGCGAGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGA
GTACGACTTCCGGGTCCGTGCAGTCAACCAGGTGTGTACATCATATTAAT
CCTAAGATGTATGTAGGGATCTTCTGTCACAAGGTATATAAGACTCTAAG
AAACAAACAAATCAAGATTAGTCAGATTTGGGGCTGAATAGCAGTGTCTT
CAGGAATATGTTTAGACTGGACATCTTCTGTCTATATAAAACTCTAAAAA
TAGTATGTGTGCCAAGCAACAAAAAAACAACAAACAAGATAAGTGATATA
TACTAGCCTAAGGGTTATCTGTAAACTTTTAATAGAAAGTGAAAAACAAA
GTCAGAGAAAGACAAAATGGAATTCCGATGTTCACAGTTTTATTGAATTT
CACTTGAACTGCAATACGTCTTGTTTCTGAGGTGCTTAACTCAGAATTGC
TTCTATGATAAGAACACATGACAGTTACCAGTCAGAAACCACTGGTAAGA
ACCGAACTGACCACTTGTGTGTTTCCGCAGGCTGGCACCGGAGACCCCAG
CGAGCCGTCCGTGCCTGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCA
ACCTGCGCGTCATCGACTACTCCCGATCCTTCGTCACCATCGCCTGGGAG
CCGCCGGAGTTCGACGCTGGCAGCAAGATCCTCGGCTACTTCATATGGAG
GTGCGTACACTTGTTTTGATGAGATTTAACTTTTCCCTCGGATATAAATT
CTTAAGAATATCACTCAGACTATGAGTGAGTGAAACGTTTTTGAAACATA
GGAACTTTAGTCCAGAATGACCAAATATGACACACACTGTTACGACATGA
AATAACACATATATGTTAGAAAATAGCCTGAAAGCTAAGTGCATATAAAT
TTTGAACTAAGTAAAGGTACACTGTATCACAATGGATTTAAGGGTGCAAT
TCCAATTGTACAATTTCGTGGGAAACACATACAAATATGCCTGTATCAAG
GTGACTTATCCATTTTGTTTTTCCCCCACAGGCGTAACATTGAGTTCAAG
GGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCGGTTCCACAT
CAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCAAGGCCAAGA
ACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCGGTGGAGACC
AAGGACGAGTTCGGTATGTCTGGATACAAATGCTTCTTAATGCGTCTTAG
GCGGCTAAATACTTCTTAGTGAATCGTTTAGAATCTGCGAAGCATGCCTC
TTTATTTGTGGCTCAGCTGCTTGACTGGTCTTTGTACAGCTATGTCATAT
GGTATATTCCTACAGATAGATACAAATACAATGGAGGTATTTGCCATATT
CATAAAACAATACTCGTACACTAAACGAATAGTCGTAAGGAATTATCTAT
CTTTTATAATCATAAACTTTAAGGTACAAATGGTCAAAAGAAGGTATCAT
TTTAGCCTTTTTCTTTGATCTTGCTACCGTCTATGTCTACCATTCAAACG
TACCTTTTTCGCACGAGAATAATTGTAACCTTTCTGTACCCCCCCTTCAG
AGCCTCCCAAGATCCTGCTGTCGGAGACGTTTAAGGACGTCATCACCGTG
AAGGCAGGTGAGACGGTCAGCGTCAACATCAACTTCACGGGCCGACCGCG
CCCCAGGGCCACCTGGGAGAAGGACGACAGCACGCTCACTCTCAGGGTAA
GGACAGGTCTCACGTCTTTAAGAACAAGTCTTAGATTTTAAGGACAAGTC
TTAGATATTAAGGACAGGTCTCACGTCTTTAAGGACAAGTCTAAGGTATT
TAAGGACATGTCTAAGGTCTTTAAGGACAAGTATTAGTTTTTAAGACAAT
TCTTTAGTCTTTCAGGACAAGTCTTAGTCTTTAAGGACAGGTCTCACGTC
TTTAAGGACAAGTCTAAGGTCTTTAAGGACAAGTCTAAGGTCTTTAAGGA
CAAGTCTTAGATTTTAAGGACAAGTCCTACGTCTTTAAGACAAGTCTTAA
GTGTTCAAAGATATGTCTTAAGTGTTTAGGAAGATGGAGCCTGACCTTTA
ACATGGAAGGGAAGATTAAGCCTCTGGTGCGACTGATACTACCTTAAACA
ATGTTCGCCAATGTCTTATGCCAGTATCTTTGGTTTCTTTGGCAAGTTGC
ACTTCTTACAACTCATACTGGTTTTGGCATGATTATGATATAATATAAAT
TGACCCAAAGATGGCTTATTAAAACTGCAAGGATGAGAGATGAATGTGAC
CAATTGGCATCAAATTGCATGTTCTTTATGTTTTCATGTCCTTTTTTACT
TCGAGGATTTTTTTACTGATGCGGATGAATACTGTGAAATTCTAGAGCCT
TCTGAGTTGATGTAATCTTTGAAACTCATACTGGTTTTGACATGATCTTG
ATATACAGTAATATGAAATGACCTAAAAATGACCTAAAAACGACCTATAA
AAACTGCAAGGATGAGACACAGATGATAAATGTGACCAATTGACATTAAA
TGTTCTTTTTTATAAAGATTATTGTTTACTGATGCTAATGAATGCTGTAA
AATTCTAGAGTCTTCTGAGTTAAGTTCTGATAGCGTGCGTAGTCCAGTGG
TTAGCGATCTTGCCTCTGGAACTAGAAGCCCCGGGTTCGATCCCGGCTGT
GTTGCTCACCCGACATGCACGCTACCAGAAAGGATCGCAGTCCTTAGGAC
GGGACGTTAAGCCGTGGTCTACTGTTCATTGTGTTATTCGAAAAGAGCTT
GGGGAATTTTCCCGGTACAAGGAACCTGTAAATACTGTACATAGCGTCTG
TCTTCTTCTCTGTCACGACCAGTGGAATATTAGCTCTTCAATGAGCTAAA
ACTGGATCGAGATTACTTTCCTTTTTCCTGATATGATTTTTTAACCCCTG
TTCCCTTAGGACCGTATCCGCGTGGAGACGACTCCCGAGAACAGCCTGCT
GACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTACAC

Coding sequence (CDS) from alignment at Sc0000008:5566505..5570546+

>transcript:BL96389_cuf68 ID=transcript:BL96389_cuf68|Name=transcript:BL96389_cuf68|organism=Branchiostoma lanceolatum|type=CDS|length=849bp|location=Sequence derived from alignment at Sc0000008:5566505..5570546+ (Branchiostoma lanceolatum)
AAGGTGGTGGCCAGGGACGCTATTGAGCCCCCAGGCCCTCCCTCTGCCCC
TGAGATCACGGAGATCTGCAAGGACGCGATCGGGTTCGCCTGGGAGCCGC
CCAAGTACGACGGCGGCAGCGCCATCACCGGCTACATCATCGAGCGGCGC
GAGAAGCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAGGCCGTCAAGAA
GCGCGAGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGAGTACGACTTCC
GGGTCCGTGCAGTCAACCAGGCTGGCACCGGAGACCCCAGCGAGCCGTCC
GTGCCTGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCAACCTGCGCGT
CATCGACTACTCCCGATCCTTCGTCACCATCGCCTGGGAGCCGCCGGAGT
TCGACGCTGGCAGCAAGATCCTCGGCTACTTCATATGGAGGCGTAACATT
GAGTTCAAGGGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCG
GTTCCACATCAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCA
AGGCCAAGAACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCG
GTGGAGACCAAGGACGAGTTCGAGCCTCCCAAGATCCTGCTGTCGGAGAC
GTTTAAGGACGTCATCACCGTGAAGGCAGGTGAGACGGTCAGCGTCAACA
TCAACTTCACGGGCCGACCGCGCCCCAGGGCCACCTGGGAGAAGGACGAC
AGCACGCTCACTCTCAGGGACCGTATCCGCGTGGAGACGACTCCCGAGAA
CAGCCTGCTGACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96389gene:BL96389Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96389_cuf68transcript:BL96389_cuf68-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96389_cuf68-E1BL96389_cuf68-E1-1564476830-87155Branchiostoma lanceolatumexon
BL96389_cuf68-E2BL96389_cuf68-E2-1564476830-87157Branchiostoma lanceolatumexon
BL96389_cuf68-E3BL96389_cuf68-E3-1564476830-87159Branchiostoma lanceolatumexon
BL96389_cuf68-E4BL96389_cuf68-E4-1564476830-87161Branchiostoma lanceolatumexon
BL96389_cuf68-E5BL96389_cuf68-E5-1564476830-87163Branchiostoma lanceolatumexon
BL96389_cuf68-E6BL96389_cuf68-E6-1564476830-87166Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000008genomeSc0000008:5566505..5570546 +
Properties
Property NameValue
Transcript idBL96389_cuf68
Biotypeprotein_coding