transcript:BL96402_cuf8 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96402_cuf8
Unique Nametranscript:BL96402_cuf8
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96402_cuf8

>transcript:BL96402_cuf8-protein ID=transcript:BL96402_cuf8-protein|Name=transcript:BL96402_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=355bp
VAGGELFERVIDDDFVLTEKDCVIFTRQICEGVGFMHNQGVLHLDLKPEN
VLCVNRTGNDIKLIDFGLARRYNPQEELKVMFGTPEFVAPEVINYDKIGY
GTDMWSVGVICYVLLSGLSPFMGEDEAETLNNVTEGVWDFEDESFDSISE
DAKNFIEKLLLKEQGSRLTAAQCMSHRWLHQEAASNTTLSKSNLKKYMAR
KRWQKTGNAVRAMSRLASLGRLASLGGKKSAKGTGGFLAKVKDQLAREEQ
AEDKPKEEPTFLKKISDLQVVEGESAMFVCKVGGAPEPEVTWYRDGERIH
SNKDYQMQRSPGGDCTLLVVRATEEDDAEYECRAENEAGKVACRAELLVE
LPGSK
Run BLAST on NCBI

mRNA from alignment at Sc0000008:5764433..5768420+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96402_cuf8 ID=transcript:BL96402_cuf8|Name=transcript:BL96402_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=3988bp|location=Sequence derived from alignment at Sc0000008:5764433..5768420+ (Branchiostoma lanceolatum)
GTGGCCGGTGGCGAGCTGTTTGAGCGAGTTATCGACGACGACTTCGTGCT
GACAGAGAAGGATTGCGTCATCTTCACTCGACAGATCTGCGAGGGAGTCG
GGTAAGGAGTCTTATTCTTTGTCTTGCATGCATGCTTCTGTTCTATTCTT
CTGCTCTTGAGTAAAGAAACCACTCTCGGGTAATAGCTTGAAAGCTCCGC
CAAAAATGATTACTCAAGCAACTGGATAAATTTTTTTTTATTGGCATAAA
ACTTTGTCTTGAATTAATCTTCTTTTAAAAACTGCTTCAAGACATCCCAA
ATTGTCTTAATCTCATTAACATATCTATTCAGAGTTTTGGTATAAAACCT
GGTGTTCTCAGTCCTATCGTTAGTCACTGACGAAAGACAGTGGATACTGT
CTGAAACGTCTGACTGTTTCAAAATCTTATCCAGTTGCTTGAGTAATTAT
TTTTGGCGTATCTTACTACCTGGATGTCTAACCTTCATCAGCTTGAAAGC
TCATCTATGTTGGTAGAAATCGTTCTGAAGCAAATTTGAACTGTAATGTC
GAACACAAGCGTTCAGGAGATATGGACAGTTGAAAAAAAGGTCCAATTTT
TGTTGGACGTTTAACTCAACTTTGCTCCAGAGCTGCTGGCTAGTTCTGCA
CATGATACAAGGTGCACAAGGTGAAAGTCGTTATCAAGACGTGCTTAAGT
TGCTTTTTGCTCCCGCCAGGTTCATGCACAACCAGGGCGTCCTGCACCTT
GACCTGAAGCCGGAGAACGTCCTATGCGTGAACCGGACGGGAAACGACAT
CAAGCTGATCGACTTCGGGCTGGCCCGGAGGTACAACCCTCAGGAGGAGC
TCAAGGTGAGATGGGACAAAATAATCTGCAGTTAATTAAATAAAAGACTG
ATCCTGACTATCCAGCACAATTAGCGATTCAGCCAATGAGGGACTGCATC
CACAGATGACCTGCTCCAACTTCTCAGATTACATGCTTCCAATTTACTTA
AAGAATTTTAATGATAAACAGATTTAAAAAAGTAATCATCAAGGAAGTTA
TGCTGATTTTTCAAACTTTGGCCCTCTCCAATGGCTGCCTGGTTGAGCCA
CTCATTGAGTGAAATGCACTGACAATACTTTCTTCTTTATGTTGTATTTT
GTGTTCTGTACAGGTGATGTTCGGCACACCTGAGTTTGTAGCACCTGAAG
TCATCAACTACGACAAGATCGGGTACGGAACAGACATGTGGAGCGTCGGC
GTCATCTGTTATGTCCTGTAAGTACAAACAAACAAACAAACTTGCACACA
ACAAACTAACATTATAGATTAAAGTCACTGTAAATCAGTTGAACTTGAAA
ACATCTTGTGTTTGAAGTTTGCAAATAGACAAGACGAATACAATTAAACA
ATAGCTTACACACCTGCATTTCAAGGTGTAGGTCTTTGCTGTATAATGTA
TGATTTTGTCATACAAAACCATTGGGCTTGTTTATTATAGATTGTTAGTG
CAAACAAATAATGACTGTAATTCTTCTTCTTCTTTTGTCAACCTCAATTG
AGGTGAAACATGGTGCTTTTTTCAAGCAGTTTTCAAGTTTTCAGCCAAGC
ACCCCTACTCTTCTCGATAAGTGTGTTGGGTTCTTTTTCATATTCCATGA
AGTGAAAACTGACTGCTTCTCCCCCCTGCAGTCTGAGTGGACTGTCCCCA
TTCATGGGTGAAGACGAGGCTGAGACGCTGAATAACGTGACGGAAGGAGT
CTGGGACTTCGAGGACGAGTCCTTCGACTCCATCTCAGAAGACGCCAAGA
ACTTCATCGAGAAACTCCTCCTTAAGGAGCAGGGGTGAGTCTTTGGTTAT
AGCAAGGGAGGGAAAAGCTTATCAGTACATACCTAGCCTAATATAAAGAA
GTACAAAAATCTCTTTCAGGAGCAAATAGCACTGTTTCTTTTATAAGTAA
TTTCGAATGTAAACACTTGAACCATCTTTATTGGTATAACATTGTGCAGT
AATGAGTTGTTTTATTAGGTAACTACTCCCCACTATTGGAGACAGAAAAC
AGACAGTTGCTGTTCTTCAGTTAGATTGTATTTTAACATATTTCAGACTG
ATCAGTACAACCAAGATAATCTCCAAGCAGATCCAACGGTTGCAAAGACC
GTATCCAACTGGCAGAAAAATTTTTTATTGTAACCGAAGCAATAAAACCT
CCTTTTGCCAGTTGGATACGGTCTTTGCAACCGTTGGGTCTGCTTGGAGA
TTACAACCAAGATACTCAACCTTGAATATCTGCTCATCTTAAGTTTGCAA
AATCTGTCTACTTCTCACAACCATCATCAACTTTTTCTCAAAGCTGTTTC
TATAATACAGTGTATTCCATCCTGAAGCCCAGGGTGTTACTAGCAATATT
ATATAAAAGTTGTAATCTTATCCTTGTAGGATTATTAAAAGTTGTGATTT
TTCCTTGCCCCTCCAGAAGCCGTCTGACGGCTGCCCAGTGCATGTCGCAC
CGCTGGCTCCATCAGGAGGCCGCCAGCAACACCACACTCTCCAAGAGCAA
CCTCAAGAAGTACATGGCAAGGAAACGCTGGCAGGTAGGACGTCTTACAT
CTTTAGGAAAGATTTTTAAGAAGTTTTGAAATGGAGAGGTTTCAAAAGAG
TAACATGTTTGAGAGCTTCCAGATAGATGTGCTTAAGAGAGATATCTAAG
ACGTTACATGTTTGAGAATGATTTTGAGAAACATAAAGTTACATTTTGGA
GAAAGATTTCTAAGAAGTTGCACGTTTGAGAAGGGTTTCTAAGAAATTAC
ATGTTTGAGAAAGGTTTCTAAGAAGTTGTCTGCGTGACATAAGGAAGCTG
TTGTTGTGAACTTGTGGCTGAAAGGTTTTAAAAAGCTTTCAGTCCACGCA
ACATTTGTGAAGAGCACAATGTTGGAAGCCCGACATGTCATGCCAGACTG
TTTCCAAGCCCTCAAAAACAGGCTGGAGCTTCTTGGCTCCTAGGCTAACA
AGGAAATTTCATCACTGATCGAGAGCCTTTCAACCTGAAGGCACAAGGTC
TAATCTGCATGCATATATATATGTGTATATAAACATATATATATATAAAA
AGAAATTGTGTGATTTGATTTGATTATAATTGCAACGGTACAATACATGT
GGGACACAGGCAGTGTGTGAAATGTCAAGAGCTTTTTACTATGAGTAAAT
AAGTAAGTTTTTATCACAATTAACTAAATCGATAATAAAAGTATGACAAC
AGTACGATAAAAGCCATAATGTGCATGACACTACGTAACCACAGAGTCTG
ACTCAGTCTGCTGACCCGACTCCCTCCCGTTTCACAGAAAACCGGGAACG
CGGTCCGCGCCATGAGTCGACTCGCGTCCCTCGGCCGCCTGGCATCGCTC
GGCGGGAAGAAAAGCGCCAAGGGCACGGGCGGCTTCCTCGCCAAGGTCAA
GGACCAGCTGGCCAGGGAGGAGCAGGCGGAGGACAAACCCAAGGAGGAGC
CGACGTTCCTCAAGAAGATCAGCGACCTTCAGGTGGTGGAGGGCGAGTCC
GCCATGTTTGTTTGCAAGGTCGGCGGCGCGCCGGAACCCGAGGTCACGTG
GTACCGCGACGGCGAGCGTATCCATAGCAACAAGGACTACCAGATGCAGC
GGTCGCCGGGCGGAGACTGCACGCTGCTGGTCGTCAGGGCAACGGAGGAG
GATGACGCGGAGTACGAGTGTCGCGCTGAGAATGAGGCTGGGAAGGTCGC
GTGTCGGGCGGAACTGTTGGTGGAGTTGCCAGGTAGCAAGTAAACAAACT
GGTGCATGCTGGGTGACGTGGCTGCATGTGCGACGTTACTGAGGAAACGG
AACGTTCTGGTTCTACGGAATGCGCAGACATTTTGTTTTACCGTAGGTCT
GCTAATTTATGGATGCAGTAATTCAAGTTTGCTACTTTTGGAAAGGATGC
CTTACTGCAAATCTGCATATTTTTGTGAGAATGCTGGA

Coding sequence (CDS) from alignment at Sc0000008:5764433..5768420+

>transcript:BL96402_cuf8 ID=transcript:BL96402_cuf8|Name=transcript:BL96402_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=1068bp|location=Sequence derived from alignment at Sc0000008:5764433..5768420+ (Branchiostoma lanceolatum)
GTGGCCGGTGGCGAGCTGTTTGAGCGAGTTATCGACGACGACTTCGTGCT
GACAGAGAAGGATTGCGTCATCTTCACTCGACAGATCTGCGAGGGAGTCG
GGTTCATGCACAACCAGGGCGTCCTGCACCTTGACCTGAAGCCGGAGAAC
GTCCTATGCGTGAACCGGACGGGAAACGACATCAAGCTGATCGACTTCGG
GCTGGCCCGGAGGTACAACCCTCAGGAGGAGCTCAAGGTGATGTTCGGCA
CACCTGAGTTTGTAGCACCTGAAGTCATCAACTACGACAAGATCGGGTAC
GGAACAGACATGTGGAGCGTCGGCGTCATCTGTTATGTCCTTCTGAGTGG
ACTGTCCCCATTCATGGGTGAAGACGAGGCTGAGACGCTGAATAACGTGA
CGGAAGGAGTCTGGGACTTCGAGGACGAGTCCTTCGACTCCATCTCAGAA
GACGCCAAGAACTTCATCGAGAAACTCCTCCTTAAGGAGCAGGGAAGCCG
TCTGACGGCTGCCCAGTGCATGTCGCACCGCTGGCTCCATCAGGAGGCCG
CCAGCAACACCACACTCTCCAAGAGCAACCTCAAGAAGTACATGGCAAGG
AAACGCTGGCAGAAAACCGGGAACGCGGTCCGCGCCATGAGTCGACTCGC
GTCCCTCGGCCGCCTGGCATCGCTCGGCGGGAAGAAAAGCGCCAAGGGCA
CGGGCGGCTTCCTCGCCAAGGTCAAGGACCAGCTGGCCAGGGAGGAGCAG
GCGGAGGACAAACCCAAGGAGGAGCCGACGTTCCTCAAGAAGATCAGCGA
CCTTCAGGTGGTGGAGGGCGAGTCCGCCATGTTTGTTTGCAAGGTCGGCG
GCGCGCCGGAACCCGAGGTCACGTGGTACCGCGACGGCGAGCGTATCCAT
AGCAACAAGGACTACCAGATGCAGCGGTCGCCGGGCGGAGACTGCACGCT
GCTGGTCGTCAGGGCAACGGAGGAGGATGACGCGGAGTACGAGTGTCGCG
CTGAGAATGAGGCTGGGAAGGTCGCGTGTCGGGCGGAACTGTTGGTGGAG
TTGCCAGGTAGCAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96402gene:BL96402Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96402_cuf8transcript:BL96402_cuf8-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96402_cuf8-E1BL96402_cuf8-E1-1564476830-87675Branchiostoma lanceolatumexon
BL96402_cuf8-E2BL96402_cuf8-E2-1564476830-87677Branchiostoma lanceolatumexon
BL96402_cuf8-E3BL96402_cuf8-E3-1564476830-87679Branchiostoma lanceolatumexon
BL96402_cuf8-E4BL96402_cuf8-E4-1564476830-87681Branchiostoma lanceolatumexon
BL96402_cuf8-E5BL96402_cuf8-E5-1564476830-87683Branchiostoma lanceolatumexon
BL96402_cuf8-E6BL96402_cuf8-E6-1564476830-87686Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000008genomeSc0000008:5764433..5768420 +
Properties
Property NameValue
Transcript idBL96402_cuf8
Biotypeprotein_coding