transcript:BL96405_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96405_cuf5
Unique Nametranscript:BL96405_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96405_cuf5

>transcript:BL96405_cuf5-protein ID=transcript:BL96405_cuf5-protein|Name=transcript:BL96405_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=276bp
TCRAINSVDVVSCSAELRVEEELTDEEGEPMVHPEFQQKIKPLEVAEDDP
ARMDCKVTGVPEPEVTWYKDGVEITQDPEYQFLFEDEESMCLIVPVASKK
HEGLYSCLAGNKLGQVACYARLTVKEKSRRPAHPGPPSFLTTLADVFAVE
GSQACFTCTVVGNPNPDIEWLLDSRLLKPTQDFNMSFENDMAKLILKTAY
PEDQGLYTCKASNGYGETSCSARLHVSEEYTLDTTHAMPPKFIHTFHDTD
AMEGREVRFDCRIIGIPQPKVAWYLH
Run BLAST on NCBI

mRNA from alignment at Sc0000008:5955558..5959868+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96405_cuf5 ID=transcript:BL96405_cuf5|Name=transcript:BL96405_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=4311bp|location=Sequence derived from alignment at Sc0000008:5955558..5959868+ (Branchiostoma lanceolatum)
CACCTGCCGCGCCATCAACTCTGTCGACGTCGTGTCTTGCAGCGCAGAGC
TACGTGTGGAGGAAGGTACGGTCTCAGTTAAAGGTTAAAGGTTGAATGTT
AAAGGTTGAATGTCAGGGCTGTACACCTGCCGCACCATCAATTCTGTTGA
TGTCGAGTTACGCGTGGAGGAAAGTACGGTCTGAGTGAAAACTGTCATTA
AGCATACATTCAACGCTCAGCTGCAGCCAGAATAAAGTGTCAGTGCATCT
GCGGACATTGTCCTTGGTACTGAAATGTGGGTTAAAGCCCATTCCGATGA
AGAGTATGTGTGCTGTAGAGAGTTGGTAGACTCCAGTTACAATCACATCC
ATGTAGTTACAATCACATACATGTAGTTACCTTGACTCATTATGTTTTTC
ATCAATTTGGTTGTATTTGTACGGTGTTGTGGGTTTGACAGTATGACTCA
AGAAGTTATGGATGGATTGTTACGAAATTTGGTAAGTGCTCAGGTCTTCA
GATGTCAAAGTCAAGCCAATGGTCCATCTGGAGTTCCAACAGAGGATGTA
GTGATGTGAGGCTTAAGGCTGAATGTTAAGGTTGAATATTAAAAGTTGAA
GGTCAATGTTAAACTTAAAGTTTGAATGTTAAAGGTTAAGTGTTAAAGAT
TAATGTTTTTGTTTTCAGAGCTGACAGACGAGGAAGGTGAGCCGATGGTC
CATCCGGAGTTCCAACAGAAGATCAAGCCACTGGAGGTCGCAGAGGATGA
CCCCGCCAGGATGGACTGTAAGGTCACAGGTGTGCCGGAACCTGAGGTCA
CCTGGTGAGTCACCATCACTGGTAACCTCTCCAATGTCGGTGTGGACTGA
CTTCAACATTGACAAATGTATGGTTAACATCTACTCATTACTCAAACAGC
ACAGTTGCAGAAGTTTCTCTGACTGTAAGGCCACTGAAATGGTTTCAAGA
TGGCACCAGTGAATGTACTGATTTTCACCCAAACCCGAGCAATTAAATCT
GTAACCCTTGTTAGTTTATGTTCCTAGGCAAAAGTATATAATTCATTATA
GGAATCCAACCAAGAATTGGCTCATGTATTTCTGATGAAAAATTGACGTT
TTGTTGATTTTTGTTTATTTCTTTTTGCAAAGCCAACAATGGAGTATAGA
GTAACCAGAACCGACACAAGAACTGGCTCCTTAGACTGCCTTTCACATGT
ACATTTATTATTGTTTGTTGATTTTTGTTTGTTTATTTCCGCAGGTACAA
GGATGGAGTTGAGATCACGCAGGACCCGGAGTACCAGTTCCTGTTTGAGG
ACGAGGAATCGATGTGTCTGATCGTGCCCGTCGCCAGTAAGAAACACGAG
GGGCTCTACAGCTGTCTGGCGGGAAACAAGCTCGGGCAGGTGGCCTGCTA
CGCTAGACTCACCGTCAAGGGTAAGGTTATGACCAGCTTCTTTTGTGCAC
AGTGCTGGCATAAGTTAGTTTAGTTAAAATCCTCCCACACCATTATTGAT
GTATAGGGCGGTGCCCATCTCCATTTCATAGCCCTGGGCCACACTGTGGT
GCAATCACTGTAGCAGAGGGCTAGTCCACTGGCAGTGGAGTGTGTTTAAC
TTCCATACTGTTTCAGAAGTATGTACCATTTTTATGAAGTCTTTGGTATG
ACTCAATGCGCCTCTTGTCCAGAGGTGTCCTTCCTGGGGCTTGAACCCCA
GTCTTTCTGGTCCAAGTAATTTGAACCAGATGTGGTAAGAGACAGAAGCA
CAGACCACTACACCACAGGGACACCCCAGTGCTGGCATAAAGCTGGCATC
AAATTGAGCAGGAAAATGGATTGCATAATGAGTCAAGCTGAAAGGAATAT
TACATTTTTGGCAGCAATACACTGAGGGATTTGTAGGGATCAGCCAATCT
TCACAGGTCACTGAACATTAACTCTTAAGTACAGTAAACTTTTTTTTGTT
CTATCGTCAAGGGTGAGGTCAAAGTTTACAGTCAAACCTGTCTATAAGCT
GGTTCACTGTTTGAACTGCACATGCGCAGTGTGATGCATTGTGGGTAATA
TGTCAAAGTTGATAGCCCCTCAGACATAAGCAAAAAATACACCTGAACAA
GTGCAAGCATAGTCTAGGCATCAAGTGTTTAGAAATTTGCGGCCTTCACC
TGTAACCTCACAGCATACACTTTCAACCTGTTTGTACAGTACTATCCATA
TCTTCAATTCATCAAAGTTAAAACGTTCTAATTTCCGATTCTCTCCAGAG
AAGTCACGTCGGCCGGCCCACCCCGGCCCCCCGTCCTTCCTGACCACGCT
GGCGGACGTGTTCGCGGTGGAGGGGTCGCAGGCGTGCTTCACCTGCACCG
TGGTCGGGAACCCAAACCCCGACATCGAGTGGCTGCTGGACAGCCGCCTG
CTGAAACCCACGCAGGACTTCAACATGTCGTTTGAGAACGACATGGCCAA
GCTGATCCTGAAGACAGCGTACCCAGAGGACCAGGTAGGTATTGTTTTAT
TTCAATTTATCACAAATGTAGCCAATGTTGCTGGACAGCCGCATTCTGAA
ACCCACGCAGGACTTCTCCATGTTGCTTAAGAACAATATCTGATCCTGAA
AACAGCGTACCCAGAGGACCAGGTGGGTCAACAGATCTTACTCAGTGTCA
CTGACAAAAAAGAGGGGATCCCACATGAAACGCTTGACCGTTTCTAGAAT
CTATCCAGTTGCTTCAGAAGCTGTTGCTTGCCGTATATTATTACCTGGAT
GTCAGACCTTCATCAACGGACCAGGTACGTAGTGTAGCGTGCATAGTCCA
GTGGTAAGGGGTCCTGACTCTGGAACTAGAAGCCGTGAGTTTGAATCCCG
CTGGGTCACTCATACAACGTTCAAACGTGCTTCACCTGCACCGTGGTCGG
GAACCCCAACCCCGACATCGAGTGGCTGCTGGACAGCAGACTGCTGAAAC
CCACGCAGGACTTCAACATGTCGTTTGAGAACGATATGGCCAAGCTCATC
CTGAAGACAGCGTACCCAGAGGATCAGGTTGGTTTCGTTTGATTTCAATT
CATCCCAAATGTAGCCAATATTGCTGGACAGCCGCGTTCTGAAACCCTCG
CAGGACTTCTCTATGTTGTTTGAGAACGATATCTGATCCTGAAAACAGCG
TACCCAGAGGACCAGGTGGGTCAACAGATCTTACTCAGTGTCACTGACAA
AATAGAGGGGATCCTACCTGAAACGTTTGACCGTTTCTAATATCTATCCA
GTTGCTTGAGAAGCTGTTGCTTGCCGTATCTTATTACCTGGATGTCTGAC
CTTCATTAACGGACCAGGTAGGTAGTGTAGTGTGCGTAGTCCAGTGGCAA
GGGGTCCTGACTCTGGAACTAGAAGCCCTGAGTTTGAATCCCGCTTGGTC
ACTCATACAACGTTCAAACGTGCTTCACCTGCACCGTGGTCGGGAACCCC
AACCCGGACATCGAGTGGCTGCTGGACAGCCGCCTGCTCAAACCCACGCA
GGACTTCAACATGTCGTTTGAGAACGATATGGCCAAGCTCATCCTGAAGA
CTGCGTACCCAGAGGACCAGGTAGGTAGTGTACGTTGATGAAAGTTAGAC
ATCCAGGTAGTAAGATACGCCAAAAATAATTACTCAAGCAACTGGATAAA
GTTTTGAAACGGTCAGACGTTTCAGACAGCATCCACTATCTTTCGTCAGT
GACTAGGTAGTGTAGCCAATGTTGCAGTGCAGGCAATGTCCTTGGTGCTG
AAAGCCAGGTTACAATAACCCTGTAAATGCTGTATTTCATGTCTGTCTTC
TCTATCACTACCAGGGGTAGAATAGCTCTTCAGTTCAAGATCACTTTCAC
TTTTTTTCCCTTTCACTTTTTTCCCAGGCCTTTACTTTTGCTTTTTTTTG
CCTTTCACTTTCAATTGTCTTTTTTTTTCACTTTCACTTTTCACTTTCCA
TTGGCACTTTTTTCACTTTCACTTTTCACTTTCAATTTTTTCACTTTCAC
TTTTCACTTTCAATTTTTTCACTTTCACTTTTCACTTTCAATTTTTTCAC
TTTCACTTTTCACTTTCAATTTTTTTTACTTTCCCTTTCCTCCAGGGGTT
GTACACGTGCAAGGCGAGTAACGGTTATGGCGAGACGTCGTGCAGCGCCC
GGCTCCACGTGTCTGAGGAGTACACGCTGGACACGACGCACGCCATGCCG
CCCAAGTTCATCCACACATTCCACGACACGGACGCCATGGAGGGCAGGGA
GGTGCGCTTCGACTGTCGGATCATCGGGATCCCGCAGCCGAAGGTCGCTT
GGTACCTGCAC

Coding sequence (CDS) from alignment at Sc0000008:5955558..5959868+

>transcript:BL96405_cuf5 ID=transcript:BL96405_cuf5|Name=transcript:BL96405_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=828bp|location=Sequence derived from alignment at Sc0000008:5955558..5959868+ (Branchiostoma lanceolatum)
ACCTGCCGCGCCATCAACTCTGTCGACGTCGTGTCTTGCAGCGCAGAGCT
ACGTGTGGAGGAAGAGCTGACAGACGAGGAAGGTGAGCCGATGGTCCATC
CGGAGTTCCAACAGAAGATCAAGCCACTGGAGGTCGCAGAGGATGACCCC
GCCAGGATGGACTGTAAGGTCACAGGTGTGCCGGAACCTGAGGTCACCTG
GTACAAGGATGGAGTTGAGATCACGCAGGACCCGGAGTACCAGTTCCTGT
TTGAGGACGAGGAATCGATGTGTCTGATCGTGCCCGTCGCCAGTAAGAAA
CACGAGGGGCTCTACAGCTGTCTGGCGGGAAACAAGCTCGGGCAGGTGGC
CTGCTACGCTAGACTCACCGTCAAGGAGAAGTCACGTCGGCCGGCCCACC
CCGGCCCCCCGTCCTTCCTGACCACGCTGGCGGACGTGTTCGCGGTGGAG
GGGTCGCAGGCGTGCTTCACCTGCACCGTGGTCGGGAACCCAAACCCCGA
CATCGAGTGGCTGCTGGACAGCCGCCTGCTCAAACCCACGCAGGACTTCA
ACATGTCGTTTGAGAACGATATGGCCAAGCTCATCCTGAAGACTGCGTAC
CCAGAGGACCAGGGGTTGTACACGTGCAAGGCGAGTAACGGTTATGGCGA
GACGTCGTGCAGCGCCCGGCTCCACGTGTCTGAGGAGTACACGCTGGACA
CGACGCACGCCATGCCGCCCAAGTTCATCCACACATTCCACGACACGGAC
GCCATGGAGGGCAGGGAGGTGCGCTTCGACTGTCGGATCATCGGGATCCC
GCAGCCGAAGGTCGCTTGGTACCTGCAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96405gene:BL96405Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96405_cuf5transcript:BL96405_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96405_cuf5-E1BL96405_cuf5-E1-1564476830-87837Branchiostoma lanceolatumexon
BL96405_cuf5-E2BL96405_cuf5-E2-1564476830-87839Branchiostoma lanceolatumexon
BL96405_cuf5-E3BL96405_cuf5-E3-1564476830-87841Branchiostoma lanceolatumexon
BL96405_cuf5-E4BL96405_cuf5-E4-1564476830-87843Branchiostoma lanceolatumexon
BL96405_cuf5-E5BL96405_cuf5-E5-1564476830-87845Branchiostoma lanceolatumexon
BL96405_cuf5-E6BL96405_cuf5-E6-1564476830-87847Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000008genomeSc0000008:5955558..5959868 +
Properties
Property NameValue
Transcript idBL96405_cuf5
Biotypeprotein_coding