transcript:BL96420_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96420_cuf0
Unique Nametranscript:BL96420_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96420_cuf0

>transcript:BL96420_cuf0-protein ID=transcript:BL96420_cuf0-protein|Name=transcript:BL96420_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=732bp
WTDGSVTLEGFELEFTSTESGDVDDEEDVCPCTYTIQDSTFRNNSGSSIN
ITRFCDATLDIQRNVFSQIRPRGENDEDAVIYSSGDIATATLSIRSNHFA
DNEIKGVYLNAWRHQVGTITVLENQFFRNKAGALLMIDGDTQIRTLRALS
IKNNIFSGNEASDSENIISIENLNACVENNTFFNNSGHYMVNWLSGDTFN
SEQVCEKNLFYDNIGMMPGEKYTIVVSGSDVQLHGNVLANPANDAELATS
HRTPLQPINATYNWWGFTSRNVIESRIRDKNDQAQWAEVLFDPWELDAPR
DGPCDLGWTYSKVASGACYRYMGGSQTWDNAVKSCRGQFSELVRRFSVLE
RTILDNLLTSREEEFLTGIPVWMEKGMDLDSSNASCKVYHPTYNGVLQTV
ACTSFYPFVCKRPMIDNCPNHCSHHGSCEAQSCICQRGWAGEDCSQFTCS
DRNNCEFGTCVGPNICRCRNGWQGRACTVSYCNRFTSCKSCSREVGCGWC
EERQSCEPGLYKGPDVTPCNAWFYHGCFTVGQRHRCSEHMEIIDCEARQC
NTALSTTTVESCLRCQDIEGCFRQSNGGYCDVWNEDQCPKGFIHPLYNDT
TRIEKILIGHNVEYVPLEGNILYRCPVRFSSWGATMFVNEGNLDIRIGQV
LSGPQANGVLHKVEQVVKTGDYTVIVAHPATLEDMLDYSDFSQEVQLEMA
VDMKRNEGVPELSVVERVLSGNGTLDGSTVRV
Run BLAST on NCBI

mRNA from alignment at Sc0000343:84073..89703+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96420_cuf0 ID=transcript:BL96420_cuf0|Name=transcript:BL96420_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5631bp|location=Sequence derived from alignment at Sc0000343:84073..89703+ (Branchiostoma lanceolatum)
CTGGACCGACGGTAGTGTCACCCTAGAGGGATTTGAGTTGGAATTTACAT
CAACGGAATCTGGAGATGTCGACGATGAAGAAGGTAGGAAACACGTTAAG
TTTTCTTCTTCATTTTTTTTGGATTGGTAATGTACTTAAGCAATTGGTCA
TTAGTATTTGATCTTTAACTTAATGATAAGCTTTGCATTTTTTATTGCAG
ATGTTTGTCCTTGTACGTACACCATCCAAGACTCAACATTTAGAAATAAC
AGCGGGAGTTCCATCAACATAACCCGGTTTTGTGATGCAACCTTGGATAT
CCAACGGAACGTATTCTCGCAAATTCGCCCCCGTGGTGAAAACGATGAAG
ACGCTGTGATCTACTCTTCAGGTGATATAGCCACCGCGACTTTAAGCATA
AGAAGTAATCACTTTGCGGATAACGAGATTAAGGGTGTGTATCTTAACGC
TTGGAGACATCAAGTTGGAACCATTACTGTTCTGGAAAATCAGTTCTTCC
GAAACAAAGCAGGTGCGTTACTGATGATCGATGGGGACACCCAAATCCGA
ACACTGCGTGCGCTATCGATAAAAAACAATATTTTCTCGGGCAATGAGGC
AAGTGATTCGGAAAATATAATTTCCATTGAAAACTTGAATGCATGTGTAG
AAAATAACACATTCTTTAACAACTCGGGACACTACATGGTAAATTGGCTA
AGTGGAGATACATTTAATAGTGAACAGGTTTGCGAGAAGAATCTGTTCTA
CGACAACATCGGAATGATGCCAGGTGAAAAGTACACCATTGTCGTGTCAG
GATCGGACGTCCAACTGCACGGTAATGTCCTTGCTAACCCGGCGAACGAT
GCCGAGTTAGCAACATCCCACAGGACTCCACTCCAACCTATCAATGCTAC
CTACAACTGGTGGGGGTTCACCTCAAGAAACGTGATAGAGTCACGAATCC
GAGACAAGAACGACCAGGCCCAATGGGCCGAGGTGTTGTTTGACCCTTGG
GAACTAGACGCACCTCGTGACGGTGAGTTGATTCTTGATTTAGTGTAGCC
CCGAACAATTGTTTATACCTCTGTACCTTCCTGGTATTTCAATATCTGAA
ATACAGTGTTGACATCAAGTACATCTTAGTCACTAATCTCCCCAATATAT
CTACAGGACCTTGCGATTTGGGATGGACATACAGTAAGGTGGCCAGTGGT
GCCTGCTACAGGTACATGGGTGGATCGCAGACATGGGACAACGCTGTGAA
ATCTTGTCGGGTATAGTAAATGGACTTATAAGTTGAATTACCGATCACAT
GTGCCCTTCAAGGGGTACTTTGGTTCACTTGTACAAATTAAAGAGACACT
CACTCTCTTTTGAAAAATAACTTATAGCAGAACATTTCTCTATTCAGGAA
TATTTTGTACCGCATATGTCGTTGCTTTTACTTCCAAGGGACAATTAACT
GACACAAACTATATGTTGTTCCAATTAGGGACAGTTTTCTGAACTAGTGA
GAAGATTTTCAGTGCTTGAAAGGACTATTCTTGACAACCTGTTGACATCA
CGAGAAGAGGAATTCCTGACAGGAATACCTGTCTGGATGGAGAAGGGAAT
GGATGTAAGCCGCTGGTGCATCATTTTATCTTGTCATACGACACAAAGTA
CAATATAACCCTTAGTACATGTGTTTGATCAGCTTTATATACACTCTAGT
TTCGAAAATTAGTTAAGCAACCTATCTATGACATTTCTGGTATCCTCGTT
TTAAACCTTTTATCGATCTCTGTCAGCTGGACAGTTCCAATGCAAGCTGT
AAAGTGTACCATCCTACATACAACGGGGTTCTGCAGACCGTGGCATGCAC
TTCCTTCTACCCTTTCGTCTGTAAGAGACCTATGAGTAAGTAGTAGAGTA
TCACTAGTTTAATTGAGACGTCTTCCACATGATAAATGTTTTCTGGGTTT
CATCTTGTTTCTCTTTTCTCTTCAAAAGGCAACTTATTACTGAACACGCT
GACTTTTAAACTTGCCTTAAGCTTTTATCAAAGGCTTATATTCGCATCCT
CTAGATCTGGCACCAACGAGCACTGTATCGAAATTTGATTGAAGATTGCA
TTTTTTTGTAGATAGTGCGGTGCCCTCATTTATTATTTTTGTTACATGTT
GTTCACAGTTGACAATTGTCCAAACCATTGCTCTCACCATGGAAGCTGTG
AAGCACAATCATGTATCTGTCAACGAGGCTGGGCAGGAGAGGACTGTTCC
CAATTTACCTGCAGCGACAGAAACAACTGTGAGTTCGGTACCTGTGTAGG
ACCAAACATCTGCAGATGCAGGAATGGATGGCAGGTAGGGAACGTCACTT
ACAATATTAGAATAACTGCTTTTGGCAAATACAGTATATTCCATTCCCCT
CCCATGCAAACGATTGTTCCATTTTGGCCTTTTCCAGAAATTGACCATCC
CAGATCAACTTCTACCCGTAAATCACCCAACTCCAAATTTTTCTTAATTT
CAGATTTGGAAGCTGGTATCGTATACAAAGTAGTTGACCGATACGTTTTC
CTTCGCTAGAGATTGCAGATGTCCTTATTTACTCTCTTAACTTAGGGCCG
CGCTTGCACTGTGAGCTACTGTAACCGGTTCACCAGCTGCAAGTCGTGTT
CACGTGAGGTCGGCTGTGGATGGTGCGAAGAAAGACAGAGCTGTGAACCT
GGACTATACAAAGGGCCAGATGTCACCCCATGTAACGCCTGGTTCTATCA
CGGCTGTTTCACCGTGGGACAAAGGCATCGATGCTCGGAGCACATGGAGG
TACGTGCCCAACTTTTTGCTCCTGTGATATCTCGTTCACGATCACTGATT
GTTCCCTTCGCCAAGGTTATGTTTTGCACAACCTTCTTGTGTCCTTCCTT
TTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCTGTCTATGAACACGATTAATCAAGAATG
CCTGGATGGATTGTCTTGGTACTTGGCAGGTGGGTAGGTCTTCCTGATGC
CTCGACATGATTAGATTTTGGGCCCCCTGGCGACTTGCTATGGTACTGCA
GCGGAACTTCCTGTTTTGATATCTCGTGTTCTGCAAATCTTACCCATCCA
CTAAATATCATTCAGAAAAATCAACAACTTCTCGAGTTATATTGTCTACA
TACAAACACACATACATACACAGTCCGCTGCAGTTCTGTAGGAAAATGCC
AGGTGTAACATTGTCGAACTTGACCTTTTCTACAACAGCTACTCACCTAC
CAAAACTCATGAAGATCCATCAAAGGTTTCTCGAGTTATGCTCTTGACAT
ACATACAGACCCAGCCCCCAGCTGGCGTAACCGAAAATATAACCTTGTCG
GCGAAGGTAATACAAGCAAGTAATATTATGATTAAGAGAACAGGCACTAT
TCATCTACAAACGCCGTGCCGTTGTAAGCCTGCCTTTACACAAAATTAGA
ATACAGACGTACCTATGCTATAAACCATAATCCACGTGGCGCGTAAAAAC
AAATACAACGACCCCATTATCAAACTGCATTAGGGAGAATTTCGTTTAAA
ACACTCCATCTCAATTCATCGCAGATCATCGACTGTGAAGCACGACAATG
CAACACGGCACTGTCAACAACTACAGTCGAGTCTTGCTTAAGGTGCCAGG
ACATAGAAGGCTGTTTCAGGCAATCGGTGAGTTGAACTGCAAAATAATAA
CACATGGGCTAACATGTCCGTTTTAAGAACCATGATAATCATTGACTCAA
CAATTGGCGTCACGTTGGCATAACGGTTACGATGTTGTGGCATTTTCTTC
ACTCCACCCAGGTGTAAAAATGTGCACTTGACTTCGGTTGGAAAGGCATA
AGGCGGTGGAATGAGAGAGTACGGCTCCACCTTTCAATACCATGTCCTTT
AAAAATGGATAACAACCAACTACCCCTACATCCCAAAGGAAGACCATGGA
GCCATAATACCTACCTACCGACTCAACAATTTCAAATAGTAAATATCTCT
TATAGTATTCAGCGAACAATTTCAAAACTGCAGAATCTCTCTCTAAATAT
ATATACAGTCGAGCAACTGACAAATCATAACAACCGAAAATCATTCTGTG
GCTTATCCTCACGCAATGCCGGCTATTGCGTATTACAGAATGGGGGCTAC
TGCGACGTGTGGAACGAGGACCAGTGTCCCAAGGGCTTTATCCACCCACT
GTACAACGACACCACGCGCATTGAGAAGATTCTGATCGGCCATAACGTAG
AGTACGTCCCGCTGGAAGGCAACATCCTGTACCGGTGTCCTGTCCGCTTC
TCCAGCTGGGGAGCAACCATGTTTGTGAATGAAGGGAACCTGGACATCCG
GATCGGTCAGGTTCTGTCCGGTCCTCAGGCAAACGGTGTACTACACAAGG
TGGAACAAGTGGTGAAGACAGGTGAGAAAATGAACGATGGTCCCTACCAC
TAAGACTATGGTATACATGTATCTCATGCAATTGGGTTACACTGGTGGTA
CCTATTCAAAAGAACTTAGTCACGGCTTTTGTTTTTATTACAGGCGATTA
CACCGTGATAGTAGCACACCCTGCCACTCTGGAAGACATGCTCGATTACA
GTGACTTCAGTCAGGAGGTTCAGCTGGAGATGGCGGTGGACATGAAGAGG
AACGAGGGAGTTCCTGAACTGTCTGTGGTGGAGAGGGTGCTGAGTGGAAA
CGGGACACTTGATGGGAGCACTGTTCGTGTC

Coding sequence (CDS) from alignment at Sc0000343:84073..89703+

>transcript:BL96420_cuf0 ID=transcript:BL96420_cuf0|Name=transcript:BL96420_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2196bp|location=Sequence derived from alignment at Sc0000343:84073..89703+ (Branchiostoma lanceolatum)
TGGACCGACGGTAGTGTCACCCTAGAGGGATTTGAGTTGGAATTTACATC
AACGGAATCTGGAGATGTCGACGATGAAGAAGATGTTTGTCCTTGTACGT
ACACCATCCAAGACTCAACATTTAGAAATAACAGCGGGAGTTCCATCAAC
ATAACCCGGTTTTGTGATGCAACCTTGGATATCCAACGGAACGTATTCTC
GCAAATTCGCCCCCGTGGTGAAAACGATGAAGACGCTGTGATCTACTCTT
CAGGTGATATAGCCACCGCGACTTTAAGCATAAGAAGTAATCACTTTGCG
GATAACGAGATTAAGGGTGTGTATCTTAACGCTTGGAGACATCAAGTTGG
AACCATTACTGTTCTGGAAAATCAGTTCTTCCGAAACAAAGCAGGTGCGT
TACTGATGATCGATGGGGACACCCAAATCCGAACACTGCGTGCGCTATCG
ATAAAAAACAATATTTTCTCGGGCAATGAGGCAAGTGATTCGGAAAATAT
AATTTCCATTGAAAACTTGAATGCATGTGTAGAAAATAACACATTCTTTA
ACAACTCGGGACACTACATGGTAAATTGGCTAAGTGGAGATACATTTAAT
AGTGAACAGGTTTGCGAGAAGAATCTGTTCTACGACAACATCGGAATGAT
GCCAGGTGAAAAGTACACCATTGTCGTGTCAGGATCGGACGTCCAACTGC
ACGGTAATGTCCTTGCTAACCCGGCGAACGATGCCGAGTTAGCAACATCC
CACAGGACTCCACTCCAACCTATCAATGCTACCTACAACTGGTGGGGGTT
CACCTCAAGAAACGTGATAGAGTCACGAATCCGAGACAAGAACGACCAGG
CCCAATGGGCCGAGGTGTTGTTTGACCCTTGGGAACTAGACGCACCTCGT
GACGGACCTTGCGATTTGGGATGGACATACAGTAAGGTGGCCAGTGGTGC
CTGCTACAGGTACATGGGTGGATCGCAGACATGGGACAACGCTGTGAAAT
CTTGTCGGGGACAGTTTTCTGAACTAGTGAGAAGATTTTCAGTGCTTGAA
AGGACTATTCTTGACAACCTGTTGACATCACGAGAAGAGGAATTCCTGAC
AGGAATACCTGTCTGGATGGAGAAGGGAATGGATCTGGACAGTTCCAATG
CAAGCTGTAAAGTGTACCATCCTACATACAACGGGGTTCTGCAGACCGTG
GCATGCACTTCCTTCTACCCTTTCGTCTGTAAGAGACCTATGATTGACAA
TTGTCCAAACCATTGCTCTCACCATGGAAGCTGTGAAGCACAATCATGTA
TCTGTCAACGAGGCTGGGCAGGAGAGGACTGTTCCCAATTTACCTGCAGC
GACAGAAACAACTGTGAGTTCGGTACCTGTGTAGGACCAAACATCTGCAG
ATGCAGGAATGGATGGCAGGGCCGCGCTTGCACTGTGAGCTACTGTAACC
GGTTCACCAGCTGCAAGTCGTGTTCACGTGAGGTCGGCTGTGGATGGTGC
GAAGAAAGACAGAGCTGTGAACCTGGACTATACAAAGGGCCAGATGTCAC
CCCATGTAACGCCTGGTTCTATCACGGCTGTTTCACCGTGGGACAAAGGC
ATCGATGCTCGGAGCACATGGAGATCATCGACTGTGAAGCACGACAATGC
AACACGGCACTGTCAACAACTACAGTCGAGTCTTGCTTAAGGTGCCAGGA
CATAGAAGGCTGTTTCAGGCAATCGAATGGGGGCTACTGCGACGTGTGGA
ACGAGGACCAGTGTCCCAAGGGCTTTATCCACCCACTGTACAACGACACC
ACGCGCATTGAGAAGATTCTGATCGGCCATAACGTAGAGTACGTCCCGCT
GGAAGGCAACATCCTGTACCGGTGTCCTGTCCGCTTCTCCAGCTGGGGAG
CAACCATGTTTGTGAATGAAGGGAACCTGGACATCCGGATCGGTCAGGTT
CTGTCCGGTCCTCAGGCAAACGGTGTACTACACAAGGTGGAACAAGTGGT
GAAGACAGGCGATTACACCGTGATAGTAGCACACCCTGCCACTCTGGAAG
ACATGCTCGATTACAGTGACTTCAGTCAGGAGGTTCAGCTGGAGATGGCG
GTGGACATGAAGAGGAACGAGGGAGTTCCTGAACTGTCTGTGGTGGAGAG
GGTGCTGAGTGGAAACGGGACACTTGATGGGAGCACTGTTCGTGTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96420gene:BL96420Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96420_cuf0transcript:BL96420_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96420_cuf0-E1BL96420_cuf0-E1-1564476830-442918Branchiostoma lanceolatumexon
BL96420_cuf0-E2BL96420_cuf0-E2-1564476830-442920Branchiostoma lanceolatumexon
BL96420_cuf0-E3BL96420_cuf0-E3-1564476830-442922Branchiostoma lanceolatumexon
BL96420_cuf0-E4BL96420_cuf0-E4-1564476830-442924Branchiostoma lanceolatumexon
BL96420_cuf0-E5BL96420_cuf0-E5-1564476830-442926Branchiostoma lanceolatumexon
BL96420_cuf0-E6BL96420_cuf0-E6-1564476830-442928Branchiostoma lanceolatumexon
BL96420_cuf0-E7BL96420_cuf0-E7-1564476830-442930Branchiostoma lanceolatumexon
BL96420_cuf0-E8BL96420_cuf0-E8-1564476830-442932Branchiostoma lanceolatumexon
BL96420_cuf0-E9BL96420_cuf0-E9-1564476830-442934Branchiostoma lanceolatumexon
BL96420_cuf0-E10BL96420_cuf0-E10-1564476830-442936Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000343genomeSc0000343:84073..89703 +
Properties
Property NameValue
Transcript idBL96420_cuf0
Biotypeprotein_coding