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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96429_cuf2 >transcript:BL96429_cuf2-protein ID=transcript:BL96429_cuf2-protein|Name=transcript:BL96429_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=823bp
GEALLDEDVEQGVVEMLAIHRRRGEKLGMELNVVGNSDPEEPIDGVFVRC
VTAGGAADRAHGGSGGLRRGDEILSINGQMLRDMTQNEAIALFQELPDTV
TTIVARNVRATAGSSESSSQEEPDRTREDVSSPALTRQDAFESRNVSRSE
TADSFKSQHSSLSPEDDNEERTGPQERTVDADVVHVPEGYDLKVVQIHKR
NSSSMGLSIAACEGPTAGYHQVHQVRDGSVCARSGQVVLGDCIAAINGHC
LKNRPQREVLQALNLPAQDVTLAILRRSQAGQLHNGGHPDVEGPDVEDPD
VPVTDIDDLLFSSDEDDQVKAADGEDQEKVNGGCDELEAFLALMNEESKR
GASLGLMSGKLTPVDEDEDENEVPSQTSSKDGNDLPIDASDDTNNGSLDS
PVLPVSQITTSVESLHDSQPSPEHTSPRGNRKRLSLPCENGEDALPGNSG
LPGDGLPPCHRRQVSTESRDSTSTFDSGWERVISDVELNSEFDDDNDSVI
LETPPPLPPYNAHNMFNDVLGMDDIVRASPMYGPDTSSSDSDTLKENSDS
EDALEVSLEHTTPPRNSLKANQHHGANGTEGASLGIHFSKPIATPGLSPA
GSVSRTPSSPEEASVPSPPAGFRDSDEMASNLSESVNSTLSAAETESLLY
RDEANFLDEPLNLPDDSETLETPSSLQGEPASPSTSDLPDVSELSSESGI
DSSITTATTSPSSDSYTVNPTSPELSDITEEAYASAASEISRRREAKHEE
PDSESDLSEFNPMQFPRQPPDGHEFPEEMSSSHCSSDLSRETSDHDLAKV
ETPEEAKGDSGPSSKNTPEEEES Run BLAST on NCBI mRNA from alignment at Sc0000019:2540739..2546982+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96429_cuf2 ID=transcript:BL96429_cuf2|Name=transcript:BL96429_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6244bp|location=Sequence derived from alignment at Sc0000019:2540739..2546982+ (Branchiostoma lanceolatum)
GGAGAGGCCCTGTTGGATGAGGATGTGGAGCAGGGAGTTGTAGAGATGCT
GGCGATCCACCGTCGCCGTGGGGAGAAGCTCGGGATGGAGCTGAACGTGG
TGGGGAACTCCGACCCAGAGGAACCCATCGACGGGGTGTTCGTGCGGTGC
GTCTACAAATGATTTGTGATTTGGGCAGATTGGGATCTTAGCGTCTATCT
TAGGCCACATCAATTTATTTTAGCTGTGGCTGGTCTAGCTGTGACTGCTA
CTATAAAAATAATTGATTTCGGTGTTGATTTTAATGTTGATACACGTATT
ACCCAATATTGTTAGCCCTAAGAATAGAGATCTGTGATCACCACTCTAGA
ATAATCCATACTGATTTTGTCCTTGATACATGTATAGATTTTTGTGTTCT
CATGTATATTCAAGCTAATTTGACTGCAGCAATAATTTCCTTGTTCTGAT
TTTAACTTATTGTAAAGTCCACGAAACAATTCAACCATTAGCTGCAGCCA
CTCCTGAACATTCCCGCATTTTTGCTCAATAAACCATTAATTATAATTAC
TATTATTAGCTAATGACATGTCATACTAATTATCGCTGATTACATAACGT
CACTAAGAAGCCAATCACTACTCTCATTATATCGATATGTCCCTCATATG
TTCTAGCTGATCACATTACTAATTATCGCTAATTACATGATGTTGCGTCC
GTTACAGGTGTGTGACAGCTATTAGCTAATCACTTGTCCTACTAATTATC
GTTAATTACATGATGGCATGTTCGTTACAGGTGTGTGACAGCAGGAGGGG
CGGCGGACCGGGCGCACGGCGGGAGCGGGGGGCTGCGACGCGGCGACGAG
ATCCTGTCGATCAACGGGCAGATGCTGCGGGACATGACGCAGAACGAGGC
CATCGCGCTGTTCCAGGAGTTACCCGACACCGTCACCACGATCGTGGCCA
GGAACGTGCGCGCGACGGCGGGAAGCTCCGAGTCAAGCTCGCAAGAGGAG
CCGGACAGAACTCGGGAGGACGTTTCCTCTCCCGCGCTCACCCGACAGGA
TGCCTTCGAGTCCCGCAACGTCTCAAGATCGGAAACAGCCGACTCCTTTA
AGTCGCAGCACTCAAGTCTTTCCCCTGAGGATGATAACGAGGAAAGGACA
GGTCCCCAGGAGAGAACGGTGGACGCAGACGTGGTGCATGTTCCTGAGGG
ATATGATCTGAAAGTTGTGCAGATTCATAAGAGGAACAGCAGCAGCATGG
GGCTCAGTATCGCGGCCTGCGAGGGACCAACCGCAGGGTACCACCAGGTA
AGAACGATAAGTTTCCCGTATTATGAATCACTGTAAATATTTCATGAAAA
TATGTTATCTGAAGAATGATATTTCTATTTGACAATGTGACATCAAAGCA
TGTACGGTACATGCATGTAGATCACAGCATTTCAAGAGGAAAAACTGGGT
AAATGCATGTCTCCTAGGAAATTCTCTTGTGCCCCTGAACAACATTTGAG
CCTCTTAAGCTTCTGAAGTTAGTTTTCACTAGCAGGTTGGTTTCAGGAAT
CACTGGCAGCTGGTCTCCACACACTGTGATCATTCTGTTATCCTTTAACA
TGCCATTTCAAGCCACTTGTAGACTCTGAGGTTAATGCAGGGTACAAGAC
AATGCCAAATACTCAGAAAGGCACAAACGTTACACTGTCTTTAGATGTTG
ATGTGCCTCCAGGATTACTGTGGCAGAAATGGCAATTGGCAAGTGTTTCA
GGGGCTGATCACTGTGATGTTTTCTGAACCCAGTATCGAATCAGTCAGGA
AATTCTGTTAAACTTCTTGTCTTAAAAAACATAGCCTGGGTAAGGTTACT
TGGGCTCCCATATTCCCTGGGCCTCACTAACTGATTGCTAGTACTGTAAA
TGCATTTAAATTTGCGTGGTTTTTATTTCGTGCTAAGGGGAAAATGGAGT
GTTCGCTGTGGTTTTGATTTCACGGCAGTGCTTTAGTCAAATACTGCAAA
GCTACAGTATTGGACAAAAATGTTCGCCGTGGTTTTAGTTTGCATTAAAA
ACCGCGAACATAAAGCAACCGCAAACATTTCTGCATTTACAGTAGTATGG
GAGCCACAGTAAGTGAACCCAGATGGCACCCAGGCTATTCAGAACCTTTA
GATAAATACTTCCTCAGGCTAATATTGTTGCTAGAACAACCGGTGTTGCG
CCCACGTGTTTGCCACCTTCCACAGTTGCGACGTGTTTGACGTGTGTTTT
AGGACAACCCATCTTCCCAACATGTGTGCGTGTACTCACGCATTCAGGTC
ATTCCACACCAAACCTCTAATTGTTTTAAGTTTGCCCTGACAGTATTTTT
CTGCCATGTCACTCATCCTGTGTTGGTCTGTCAATAGTACAACTGACCAA
CACACCACCTCTGTTAGCTATAGACAAGTCTAAATACTGAAAACGTTTTC
GTAGCTCTCCAGAAGGAATTAAAGGTTTAAGGTGACGTTTTGTTAACCCT
AACCCTGATGAACCAGCCTTTTCGCACCAAATTTGTTCAGGTTATAGGCT
AAAGCAGCAGGGAGAAGTATTAAGAAAAACTTGGTAAATGGCAGCGAAGA
GGATTAAACCCCTATAAGCCCTTGTTTAACATGCCAACAGACTCACCCTT
ACTTTATATAGCCAACTTGAAGTCAAACAGCACCGCCTCCAAAGGCATGT
CTGAGAAAAACATGACGGACAAAAGTTGACTTTCTTGTCCTGCAAAGTTT
ATTATTTCTACTCGATGTTACAACTGACTGTAGCTGTAAGACATTTTTAC
TATCTAATTTGTCTTCACTTTATTTGCATATCAATTCATAGTTCAGGGTT
AAAAACCTGCTGATGTACAACTTTTGATCAGTGTCACTGACAAAAAATAG
TTGATGCTACTTGAAACTTCCAACGACCGTTTCCAAAATCATATCCAGTT
GCTTGACTAACTGCTATTTGGCATATTTTATTAGCTACATCAACATATGT
GATGTTTTGACTTCAAGCAAAACTGGTACAGAGCTTTGTAAGAGAATGCA
AGACCTTCTTGGGAAAATTGCATGATTTACAGTGTGAATGATTAAAAGGT
TTCAGCCCATGAGGCTTGAGAGATTCTGTGTTACTGCTCCCATTTAATGC
AAGCTTGAGAACAGTTTTACCCCAGTGAGATATACGACGCCCCTTCTCTC
CCATGGCCTGGCTTTATCGGTGTGTCGATGGATGGGTGGTTTTCATGGCC
CCTGTGATTGGAGCCATCCATCAACACGTCCTTGTGGGTGAAATGTGGCG
TTTTACGACAGACTGTGAAGTATGGGGTCGCTGGCACTACCAGTTGGCTG
CCTTTTTATAGTAGTAAAGAACTGATCATGACTGTCAGAAGTAAGGTGAT
TGGAACTTTATCTGTTCTTAGTCATAAAGGGCGATCTTTTATAAGGAATT
GTGAAATTTAGGAGTGATTACTGAATGTGGTTTTAACTCCTAATTTCATA
CAATATCGTACAGTCAAAGGAATAGGGTGCCTGCACTTGTGGTTTTGCAA
CATTGCTTGTAATGCTAGAGGTAAATTGGAATTTGTGTGATATAGTTACA
GTCAGTCTCATATCTATGCAATGTTGCAAACTGTCCACCATGTTATACAC
ATGCAAATCTGTGAGGCTTCCAGTTTAAACAACCAGCATGATAGCTGTGA
CATGCAAACAACCAATAGTAGAGGTATAATGCGACATAGTGGTAAGTTTT
GTAGCTTTCTTAAAGTTCTTTTTGTGACTTCCTCCAGGTGCATCAGGTGA
GAGACGGGAGCGTGTGCGCCAGGAGCGGGCAGGTGGTCCTCGGGGACTGC
ATAGCAGCCATCAACGGGCACTGCCTGAAAAACCGGCCGCAGCGCGAGGT
CCTGCAGGCACTGAACCTGCCCGCACAGGACGTCACACTCGCCATCCTCA
GGAGAAGTCAGGCAGGGCAGCTGCACAACGGAGGCCACCCGGATGTTGAG
GGCCCGGATGTTGAGGACCCGGATGTTCCGGTGACAGACATTGACGATCT
GCTGTTCAGCTCGGATGAAGACGACCAGGTAACTAAATAGAGAGAACTTT
ATTGTGCGACAGTTGTAACCGCACAATGTATACGCCAAAAATAGTTACTC
ATTGACAAGCAACTGGATAAAATTTTGAAACAGTCAAACATTTCAGACAA
CATCCGCTGTCTTTCACATCAGTGACTAAAGGGAAGAACTAGAGCCAAGT
TTTATACCAAAACACTGCCATACAACTTGAACCAAAACATGGCAGTTGAA
CTATTGCTAATATCTAAGAATTGTAAAGAACTAAATCTACTAATACTTTA
TAACATTAATGTTGATAACAGTATGCTGCATCAGGAATGTATAACATTGT
GTCGTTTTTGCATTGAGTCGTGTATATATATAGATTGGCCTACATTGGAA
GATATTTGAACAGAGCATGATAATATGATATTGAATAACTCTTTTTAATG
TCTTTGTATGTGGTTATGTTTTATCGGACTTACATGCAATAGACTGTAAA
AAAATTTTGTCGGTCTTTATCATAACTTGGACAATCCATTATGAAGTGGC
ATTCATAATCTGAATATCAACATGGCATGTTCGACACAGTCCCTCATTGA
CTGGTGAGTAGTGTCAGCCCTTTTTGATTTGTAGAGAGTGAACACTAATC
CTTACTTTCGTTATGCCATTCCTGCAGGTGAAGGCAGCAGATGGGGAGGA
TCAGGAGAAGGTGAACGGGGGATGTGACGAGTTGGAGGCCTTCCTGGCTC
TCATGAACGAGGAGAGCAAAAGAGGAGCGTCACTCGGCCTCATGAGTGGG
AAGCTGACCCCAGTGGATGAGGATGAAGATGAAAATGAAGTACCATCACA
AACTTCATCAAAGGATGGTAACGATTTACCCATAGATGCTAGCGACGACA
CAAATAATGGCAGTCTTGATTCACCAGTCTTACCGGTGAGTCAAATCACC
ACCAGTGTAGAAAGCTTACACGACAGCCAACCGTCCCCGGAACACACATC
ACCGCGTGGCAACAGGAAGCGGTTGTCGTTACCGTGTGAGAATGGGGAAG
ATGCGTTGCCTGGCAACAGTGGTCTCCCTGGTGACGGTCTTCCCCCCTGT
CATCGGCGGCAGGTGTCAACGGAGAGTCGCGACAGCACAAGTACTTTCGA
CAGCGGATGGGAGAGGGTTATCTCCGATGTGGAACTGAACAGCGAATTCG
ACGATGACAATGATAGCGTCATCCTAGAAACCCCTCCCCCACTCCCTCCT
TACAACGCCCACAACATGTTCAACGACGTTCTTGGGATGGATGACATTGT
GCGTGCCAGCCCCATGTACGGCCCAGACACAAGCAGCTCGGACTCAGACA
CACTTAAAGAAAACTCAGACTCAGAAGATGCCTTGGAAGTAAGTCTTGAA
CACACAACTCCACCCAGAAACTCCTTGAAGGCTAATCAGCACCATGGTGC
AAACGGTACTGAAGGAGCATCTTTGGGGATACATTTCTCCAAGCCGATTG
CAACACCGGGACTCTCACCTGCAGGTTCAGTCAGTAGAACACCTTCCTCC
CCTGAGGAGGCGTCTGTTCCCTCTCCTCCAGCGGGGTTCCGGGACAGCGA
TGAGATGGCGTCGAACCTGTCGGAGTCTGTGAACAGCACGCTGTCCGCTG
CTGAGACTGAGAGCTTGCTGTACCGCGACGAGGCAAACTTCCTGGACGAA
CCCCTCAACCTCCCCGATGATTCGGAAACCTTGGAGACCCCGTCCAGCCT
GCAGGGCGAACCCGCGTCCCCGTCGACCTCTGACCTTCCCGACGTCTCTG
AGCTGTCCAGCGAGAGCGGCATCGACAGCAGCATAACCACGGCAACGACT
TCTCCAAGCAGCGACAGCTACACCGTCAACCCGACAAGCCCCGAGCTGTC
CGACATCACAGAGGAGGCGTACGCGTCAGCGGCCTCCGAAATCTCCCGGA
GAAGGGAAGCGAAGCACGAGGAACCGGACTCGGAGAGCGACCTGTCGGAG
TTCAACCCCATGCAGTTTCCACGGCAACCGCCGGATGGTCACGAGTTTCC
CGAAGAGATGAGCAGCTCCCACTGTTCCTCCGACCTCTCCAGGGAAACCA
GCGACCATGACCTTGCCAAGGTCGAGACGCCCGAGGAGGCCAAGGGAGAT
TCGGGACCTTCATCCAAGAACACGCCCGAAGAAGAGGAATCTCC Coding sequence (CDS) from alignment at Sc0000019:2540739..2546982+ >transcript:BL96429_cuf2 ID=transcript:BL96429_cuf2|Name=transcript:BL96429_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2469bp|location=Sequence derived from alignment at Sc0000019:2540739..2546982+ (Branchiostoma lanceolatum)
GGAGAGGCCCTGTTGGATGAGGATGTGGAGCAGGGAGTTGTAGAGATGCT
GGCGATCCACCGTCGCCGTGGGGAGAAGCTCGGGATGGAGCTGAACGTGG
TGGGGAACTCCGACCCAGAGGAACCCATCGACGGGGTGTTCGTGCGGTGT
GTGACAGCAGGAGGGGCGGCGGACCGGGCGCACGGCGGGAGCGGGGGGCT
GCGACGCGGCGACGAGATCCTGTCGATCAACGGGCAGATGCTGCGGGACA
TGACGCAGAACGAGGCCATCGCGCTGTTCCAGGAGTTACCCGACACCGTC
ACCACGATCGTGGCCAGGAACGTGCGCGCGACGGCGGGAAGCTCCGAGTC
AAGCTCGCAAGAGGAGCCGGACAGAACTCGGGAGGACGTTTCCTCTCCCG
CGCTCACCCGACAGGATGCCTTCGAGTCCCGCAACGTCTCAAGATCGGAA
ACAGCCGACTCCTTTAAGTCGCAGCACTCAAGTCTTTCCCCTGAGGATGA
TAACGAGGAAAGGACAGGTCCCCAGGAGAGAACGGTGGACGCAGACGTGG
TGCATGTTCCTGAGGGATATGATCTGAAAGTTGTGCAGATTCATAAGAGG
AACAGCAGCAGCATGGGGCTCAGTATCGCGGCCTGCGAGGGACCAACCGC
AGGGTACCACCAGGTGCATCAGGTGAGAGACGGGAGCGTGTGCGCCAGGA
GCGGGCAGGTGGTCCTCGGGGACTGCATAGCAGCCATCAACGGGCACTGC
CTGAAAAACCGGCCGCAGCGCGAGGTCCTGCAGGCACTGAACCTGCCCGC
ACAGGACGTCACACTCGCCATCCTCAGGAGAAGTCAGGCAGGGCAGCTGC
ACAACGGAGGCCACCCGGATGTTGAGGGCCCGGATGTTGAGGACCCGGAT
GTTCCGGTGACAGACATTGACGATCTGCTGTTCAGCTCGGATGAAGACGA
CCAGGTGAAGGCAGCAGATGGGGAGGATCAGGAGAAGGTGAACGGGGGAT
GTGACGAGTTGGAGGCCTTCCTGGCTCTCATGAACGAGGAGAGCAAAAGA
GGAGCGTCACTCGGCCTCATGAGTGGGAAGCTGACCCCAGTGGATGAGGA
TGAAGATGAAAATGAAGTACCATCACAAACTTCATCAAAGGATGGTAACG
ATTTACCCATAGATGCTAGCGACGACACAAATAATGGCAGTCTTGATTCA
CCAGTCTTACCGGTGAGTCAAATCACCACCAGTGTAGAAAGCTTACACGA
CAGCCAACCGTCCCCGGAACACACATCACCGCGTGGCAACAGGAAGCGGT
TGTCGTTACCGTGTGAGAATGGGGAAGATGCGTTGCCTGGCAACAGTGGT
CTCCCTGGTGACGGTCTTCCCCCCTGTCATCGGCGGCAGGTGTCAACGGA
GAGTCGCGACAGCACAAGTACTTTCGACAGCGGATGGGAGAGGGTTATCT
CCGATGTGGAACTGAACAGCGAATTCGACGATGACAATGATAGCGTCATC
CTAGAAACCCCTCCCCCACTCCCTCCTTACAACGCCCACAACATGTTCAA
CGACGTTCTTGGGATGGATGACATTGTGCGTGCCAGCCCCATGTACGGCC
CAGACACAAGCAGCTCGGACTCAGACACACTTAAAGAAAACTCAGACTCA
GAAGATGCCTTGGAAGTAAGTCTTGAACACACAACTCCACCCAGAAACTC
CTTGAAGGCTAATCAGCACCATGGTGCAAACGGTACTGAAGGAGCATCTT
TGGGGATACATTTCTCCAAGCCGATTGCAACACCGGGACTCTCACCTGCA
GGTTCAGTCAGTAGAACACCTTCCTCCCCTGAGGAGGCGTCTGTTCCCTC
TCCTCCAGCGGGGTTCCGGGACAGCGATGAGATGGCGTCGAACCTGTCGG
AGTCTGTGAACAGCACGCTGTCCGCTGCTGAGACTGAGAGCTTGCTGTAC
CGCGACGAGGCAAACTTCCTGGACGAACCCCTCAACCTCCCCGATGATTC
GGAAACCTTGGAGACCCCGTCCAGCCTGCAGGGCGAACCCGCGTCCCCGT
CGACCTCTGACCTTCCCGACGTCTCTGAGCTGTCCAGCGAGAGCGGCATC
GACAGCAGCATAACCACGGCAACGACTTCTCCAAGCAGCGACAGCTACAC
CGTCAACCCGACAAGCCCCGAGCTGTCCGACATCACAGAGGAGGCGTACG
CGTCAGCGGCCTCCGAAATCTCCCGGAGAAGGGAAGCGAAGCACGAGGAA
CCGGACTCGGAGAGCGACCTGTCGGAGTTCAACCCCATGCAGTTTCCACG
GCAACCGCCGGATGGTCACGAGTTTCCCGAAGAGATGAGCAGCTCCCACT
GTTCCTCCGACCTCTCCAGGGAAACCAGCGACCATGACCTTGCCAAGGTC
GAGACGCCCGAGGAGGCCAAGGGAGATTCGGGACCTTCATCCAAGAACAC
GCCCGAAGAAGAGGAATCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000019 | genome | Sc0000019:2540739..2546982 + |
Properties
| Property Name | Value |
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| Transcript id | BL96429_cuf2 |
| Biotype | protein_coding |
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