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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96433_cuf3 >transcript:BL96433_cuf3-protein ID=transcript:BL96433_cuf3-protein|Name=transcript:BL96433_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=303bp
SRQLWQGKVYMFAFRKLLSTRNTEQRAVGTTVPYPSPSMSARRSRPRAVT
GVLAVLLAAACAPLPRGTATAVPGTVDPIVNVARGKPVRANVTCGDPTED
FYPHSDSVKRPPDRQLQICDASDPVLSHNASLMTDGNSSTWWQSTSLQQL
MFAGNGLGHRAEVFITLDLGETYHPENITILMGDTKRPGRLAVMRSADGL
TFDPWLYLVTNGNRDCRRFGVAQQPEPDSSDSVVCKEYPQLGVEQLYSER
ITVSLSEVPPSFSDEAVLRWQAVRHLQLRFYDMDLVLGIFEDQFHHYAVS
EVS Run BLAST on NCBI mRNA from alignment at Sc0000019:1966446..1973182- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96433_cuf3 ID=transcript:BL96433_cuf3|Name=transcript:BL96433_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=6737bp|location=Sequence derived from alignment at Sc0000019:1966446..1973182- (Branchiostoma lanceolatum)
GTTCACGCCAGCTGTGGCAAGGTAAAGTTTACATGTTTGCTTTTAGAAAA
CTTCTGTCGACAAGGAACACCGAACAGCGAGCGGTCGGTACAACTGTACC
CTATCCCTCCCCGAGCATGTCAGCGCGGAGGAGCCGTCCCCGCGCCGTTA
CCGGGGTGCTGGCGGTGTTGTTAGCGGCGGCCTGTGCGCCCCTGCCCCGA
GGGACTGCTACAGCTGTGCCCGGGACTGTCGTAAGTGTCGCCATGGCGGA
TTTATGTCGTTTATCGATCCTCACGTACGTTTTATTTTCTCACAAACACG
GACACTTTCCGTGTCAACTCCAGCCCAACTTTAGCTGGAAGCCAACCCGG
ACTTTCATTCATTCCCTGGTGGTTAAAGTGGCAGTGTAGGGTATCAGGTT
TCACAACACGGACACATGTGAAGAAGGGGTAGCTAGCTAGCCGGAGTCTT
CTTGGGAATGAACGATTGTATAAAATCAGCCAAACTTGAGGAATTTCTTG
TATGGGCAAGAAGCCCAACTTACTACTCTTACTAGTAAGCGAATCATTCG
CACCATTTGGGCCCAATTTCTTCTACAAATTGTGTGACAAACATTTAGAC
AAACTGGGCGGAAACTAGCGTTAGGGCACTGGCGCGATGGCGTATTGGCG
GTCTATTTTCCACAAGCTCCTCAGAAGAAAACTTGCCACCAGAAAACTGA
AGAGAGTTGTCAGTACCAGTATTGATGATTTGGTAGCTTCTGTAAATGAT
GCCTCTAGCTTTAGGGAGAACATTTCTATCCCCCCCCCCCTCCCCAAAGC
GACCAAAGAACCTCAGTTTGCAAGGTACATGTAACCTGTAAATAATCCAC
AAAAGTAAATAAACTAAGGTGCTAAAATCCTGACGTTACAGGGCATAGGC
CTCAATGCTTGTCGCAGAAACTCTAATTTAAGATCGTACCTAGCTGCACC
ATTTGGAAGTGTGTTTTTTAATTTTCTGTGAGAAAAAATTGCAGGTGGAA
ATATGCAAATTAGCCCAAGAATTAGCCCAAGAATTGAGAAAATACGTATC
CTGAAGTTTAGAGATATTGATTGTATCAGGGAATAGTATGATATTGTTAT
ACATGTATTTGAAAGTAGAAAACCTTGTACTGTCAATTTTTAATGTGTTT
CTGCATGACACATCAGTAAATATTTCATATGTAAAGTGTAATATCAAAAG
GTATTTCAATGCAAGAATAAAAGATCATTTTAGTTTTCAAATAAGAGATC
TTAGTATCTTTTTCATCATTTAGACTTAATTGAAATTTTCAAACAGCTTT
GTAGCCCAATTCAACTTCTGACAAATCGATTTTCAAGGGCTACAGTACAC
ACAACACATAACACATAGAATCAACATTGCAGTATGTTATTTTGCTAGAT
GTTGGAAATTACATATTGGGTACAAAGATATTGAGTAGATCACAGTGCTC
AACAAGTACTGATTTTGTAACCATGCTATGCAGAATAAGTGAATGACTCG
ATTTTGAATGAACCAGGACCCAATAGTGAATGTGGCGCGAGGCAAGCCAG
TGAGAGCGAACGTGACCTGTGGTGACCCTACAGAGGACTTCTACCCACAC
AGCGACTCTGTGAAACGTCCACCAGACAGACAGTTACAGATCTGTGATGC
AAGGTACTGCAAACCTTTCCTTACAATCTATATAAGTATTACATCGTTTG
TTTGTTTGTTTAGACCCTTGTAGTCCTATGAAAAGCTAGTGGCCCATACA
CATGTATGGCAGCAAGTTTCCTTGCTGCTTCAGGAGCAAGGTATATCAGG
GCTCGAAATAGTGGGTGCATGTGCACCCAGTGCACCCAAAATTGGAGCTG
TGCACCTAATTTTTGACTGTGGGTGCACTGGTGCACCTATATATTTTTGT
AGCCTATAAGGTTAAGGTACTATTGTACACTAGTATATAGAATATTCTTG
AATTGTAAGTATAAAAAACAGCATGATAACATTTTGTTGTACTTTATTTA
ATGTATTGTTTGAAATTTTGAAGTTAGCTATAGAATTACAGATTGAAGTT
CTTAAGTTAAGAAAGGCAGCAGCGTTAAGCTTTGTAATTATGTTCTGAAG
AACATTCAACTTTATTTCATCTGGTGCACCCAAAATTCTTTCTGTGCACC
CAATTTTTTGAGTTGGGTGCACCAGTGCACCTATTCCCAAATATAAATTT
CGAGCCTTGTATATTTATACAGGGAGATGTTGCTAGCCTTTCCCCTTTAA
CGAACAGTCCAAACTAAAAACGGCTGGCCTTGGTGCTGAATGACTGGCCT
TGGTGCTGAATGAATACTAGTACTCACCAGGGAGTGACCCCCCTGCCCAC
TGATCATGAAGAGCCAAAAGCCACCAGCCAGCCACCTGTGCCACCTGTAC
AAAGATGAAACCCTTACACCCGTGCCTGAGCCCTCAACCTACCGAGGTTG
CTTCCCCCTCAGTGATACCCCTTCGAGCGTAATGATGATGTTAAGAAGGT
TTGACAGTGGTACGTAGATAAAGAAGAAGAAGAATGGAAACTGAGGACAA
TTTGATTTTAAACTACATAAATAACATAAAGAGAATGGAGCCCTCAGTCA
TTGGCAAAGATAGTGGACACAATCAGAACCGTCTGACCATTTACAAAGTC
TACCTCCTCAAACACGGGACATCCCTCCCTCATTTTACGTCCCTTCCAAA
CGATGGGTGCAGCCCTAACTGAGATGTCACTTGGATTGAACCTGGGTCTC
CCAGTTACCAACAAATTAAACCAGGAGCTCAACTGTGAGGCTGTTTCCAG
TTGAGCCACAGGGACATCCCTGTATTCCATGGTATAAGATGTTATTTGAT
ACTTTGGCTTCAGCATTATATACAACAGGGTTGCCAAACAAACTTGGGTC
GATTCAAAAAGAGGTGCTGAAATCACAACTGAGGACAATTTAACTTGAAA
ACTCCCGCAACTTATCATTAAAAGTCGCCACACCCTTGAAAATGACACGG
TCGTCATCAGCAACATTTTGTTCCCTTGCGGTCTGGATTGGGGTGGTCGC
GGTCACAGAATGCTTGGGTCTATGAGGGAACAAAATCGGGACCGGCCGAA
AGTCGTCTTAAGGCCGATGGTCATCTTTTGGATGTGGTCGTTAGACCAAA
TCTGACTGTACATAAAGAACATAAGAGAACACTGTCCTCAGTCACTGGCG
AAAGACAGTAGCTGCTATCTGAAACGTCTGACCATTTACAAAATCTATCC
AGCTGCTTGAGTAACTTTTCTAAGGTGTATCATACTACCTGGATGTTTAA
CCTTCTTTTTCCACAAGATAATCAGAAATCTGCATATAGATATCTTTTAC
TTTCTGTAACTTTACAAAAATAACACATTTATCTGTACTTTGGGTAGGAT
GTAATTTTTTTACAGGCTTTACAAATGTCAAAACTTAATTGGTTTTTTTT
TCCCACAGTGATCCTGTCCTGTCCCACAATGCCTCCCTGATGACTGATGG
CAACAGCTCCACCTGGTGGCAGAGTACATCACTGCAGCAGCTGATGTTTG
CTGGGAACGGACTGGGCCATCGAGCAGAGGTCTTCATAACCCTGGACCTG
GGAGAGGTATGGTTTCTAGAAATAAGCGACATCTTAACGAGCAAAAACTT
TCAATAGTTTTTCCTCAGGATTTACCTGTGTGCACTGGCAGTCCACACTG
TTCACTGTGGAAGTTAACCTCTTCCTAAGTCTTTGTTAAGCCAATGATGT
ATGTTTATAAGCCCTCTCTATAAACCAAGAATCTCAAGAGAATCTTCATC
ATTTCACTAGAAGAAAGAAATATATACTAAAGGTATGTAAAATAATCAAT
AAATGACTTAAGTCTTTTTCTACCTAAATGTATGTACATACAAGAATGTA
ATGTTGAAAATCAAGGTCAAGATTTCATAAATCGTTTGCTTCATGGTTTT
ATATCTAAGGTCATCAGTTTCCATGATGATGACCTTTCACCTGCCCTCTG
ACCCTTCCAGACCTACCACCCAGAGAACATCACCATCCTCATGGGCGACA
CCAAACGTCCGGGACGCCTGGCCGTGATGAGGTCAGCTGACGGGCTGACC
TTTGACCCCTGGCTGTACCTGGTAACCAATGGCAACAGGGACTGTCGGAG
GTTTGGGGTTGCCCAGCAACCAGAGCCGGACAGTTCAGATTCTGTAGTGT
GCAAGGAGTATCCACAACTGGGGGTGGAGCAGCTGTACAGTGAACGGGTG
GGGACCAGTTATCAATATTAACCATTTGTTTATCATATTATAGTGTATCA
TGTATGGTTGTATTGAGCATCCTAACAAGGTGAAAACAATACCTTTTACC
AGAGCTGAGTGGTACAGTCAAAGCTGGCCAGCCAACCACCTGGCACAGCA
AACCATCTTCAGTTGTAAGGCACCAGCCATTTTTCATCAGTCAGTTGTTT
GATACTGAGACCAAGTTGTCAAAGGCTAGGTGTGACAGGTTGTAATTCAA
AGTAGTTAACATCTTTTTTCACAATTGGTTTTGAAATTTCAACTTTTATG
CTTTTTTCTGAAAGTCAAATTCAACCTGAGTTTGGTGTTACCATTGTCTA
ACAATGAAGGGCAGCTCTTGATTATATACAATGGACTGTAACAGCATCTC
TTCACCGTAATTCAGAAACATTGATAATGATTGAGGCAAGCTTAACTCAC
TGAGAGCGACGACTAACTAAACCAATAGGAGAAACAGGCTGATGGGTGTT
TGAGAAATTCCCTACCACATTTGCTGCTTTCAGTGAGAAATGTATGGATT
CAATTCAACCATCCATTCATTCATTTATTCTTGAATAACAGATAAATGCT
TCTTCCCCCCAGATCACAGTGTCCCTGAGCGAGGTTCCCCCCAGTTTCAG
TGACGAGGCTGTCCTGCGCTGGCAGGCAGTGAGACATCTGCAACTACGCT
TCTATGACATGGACCTGGTGCTGGGGATATTCGAGGACCAGTTTGTGAGT
ACACTGGGCATTTAACTTTTAGAATGTTAAAAGTAATTTTGCCAAAAAAC
AGTTACTCAAGTGTTTTCAGAATGTTATCAGATGGATGTCTAACCTTCAT
CAACGTAAAAGTGCTTTCCTTTGGCAAGACGTTTTTTGAAGCAGTTTAAT
TGTGAGTACACCGGGCTTTTTAACCTTCTCCCCGCTGCAGTAGCCTTTTT
GGCACCAAATCCGTATTGGTTACAGAGTTAGGCAGCAGGGAGAAGGTTAA
CTTTTATAGAGTTAAAAGTACAGTCAAACCTGTATTAGCGGCCACCTTTG
CATAGCGGCCACCTGCCCATAGTCACAGTGGTCACTTTTTGTCGGTCCCT
TGGATTTTTCCCATTGACGTAAGCATTAAGAATTCGTCTATAGCGGTCAC
TGTCAAACGCGGTCGCGGCCACACGGTTTTCGGTCCCACGGGTCTGGAAA
CACTGCCAATAACGGTCGCGGCTCATGGTTGCCGCAAGATTTCTTCCAAA
TCTCGGCAGAAAAATATTGTCATTAAATTTTTTTTATAGCATGCAGTATT
ACCCATGAAAATGTTGCCTATGGTTTTATTTGGCCCCTGGTGAGGGTTTT
GAATTTCCAAAACCGCTAAGACGCCAGAAATTTGCAGACAAAGAGTCTCT
TGCGCGCGGTACATGTTGCCGACGCTTTGTTTACTTGGGTTACTTCACTA
GTAGTAGCATGGTCGANTCTCTTGCGCGCGGTACATGTTGCCGACGCTTT
GTTTACTTGGGTTACTTCACTAGTAGTAGCATGGGCGAGCACTTTATTAT
AAATTATACGGACGCCTTTCATCCTCTACAAAAAGGTTTTAAAGTCATCA
ATTCTTTGTTTGTGTGTTCTCTTTATTCAAAGAACTTCTTTGACGAAATA
GGTTTACATATTGTACTATTTAATATAGAGTAAAATCATACCCCACACCT
ACATTACAGTAGACTATCCCAATGACCCTATGACCTCAAGCACCATTTTG
TTTTTCCCACACCGTCAAGGAATCCAACCCAAACAGGCTGATTTTACCGT
GATATTCCGCAATTTTTTCCCGATAAATAATGTCACCGCGCAATTGAAAA
TGACACGGTTGTCTTCGGCAACATTTTAAGTCGCATGTGCTCCGGTTTGG
GGGCGGATCTATGGATCGACTTGGACTTAAATAATATGCTTGTGGAAAAA
TCGAGACCGACCGAAATCAGTCATCTTCAAGATCTTGAGCCGATCGTCGT
CTTGTGGAAGTGGTCGGTAGACCAAGTTTGACTGTACACTGTACATGTAT
AGTATGTGAATAAATGTTTCTCAGTGTGGCACTTATTGCTCGTGGTCAAA
ATCAACCGTTTCTATAGAGCGGCCACCTGTCCATAGCGGTCGATTTTGGC
CAGTCCCTTGAGTGACCGCTATAGGCAGGTTTGACTGTACTTTACTTTCA
ATTAGCAAGTTGTTATGTTCAATCATTTTTATCCTCCTGTATGTAATGGC
AATCTTTGTTTGTAATAAAAAATGCTGTCTTTATTTCATACCTAGCTGCA
AAATATGTAATATTATAGCAGATACTCGTCGACTAGTATCTTATGGCTAG
TAAGGGCTTACTGGTTTCATATTTCAAAACGTTTTAGATTTTAAAAAAGA
TCTCAGACCTTTTACTGGCTGGGCCAAGAAATATGATATTTTTATCTATT
TCTTGCCAGCACCACTACGCCGTGTCTGAAGTCTCTG Coding sequence (CDS) from alignment at Sc0000019:1966446..1973182- >transcript:BL96433_cuf3 ID=transcript:BL96433_cuf3|Name=transcript:BL96433_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=909bp|location=Sequence derived from alignment at Sc0000019:1966446..1973182- (Branchiostoma lanceolatum)
TCACGCCAGCTGTGGCAAGGTAAAGTTTACATGTTTGCTTTTAGAAAACT
TCTGTCGACAAGGAACACCGAACAGCGAGCGGTCGGTACAACTGTACCCT
ATCCCTCCCCGAGCATGTCAGCGCGGAGGAGCCGTCCCCGCGCCGTTACC
GGGGTGCTGGCGGTGTTGTTAGCGGCGGCCTGTGCGCCCCTGCCCCGAGG
GACTGCTACAGCTGTGCCCGGGACTGTCGACCCAATAGTGAATGTGGCGC
GAGGCAAGCCAGTGAGAGCGAACGTGACCTGTGGTGACCCTACAGAGGAC
TTCTACCCACACAGCGACTCTGTGAAACGTCCACCAGACAGACAGTTACA
GATCTGTGATGCAAGTGATCCTGTCCTGTCCCACAATGCCTCCCTGATGA
CTGATGGCAACAGCTCCACCTGGTGGCAGAGTACATCACTGCAGCAGCTG
ATGTTTGCTGGGAACGGACTGGGCCATCGAGCAGAGGTCTTCATAACCCT
GGACCTGGGAGAGACCTACCACCCAGAGAACATCACCATCCTCATGGGCG
ACACCAAACGTCCGGGACGCCTGGCCGTGATGAGGTCAGCTGACGGGCTG
ACCTTTGACCCCTGGCTGTACCTGGTAACCAATGGCAACAGGGACTGTCG
GAGGTTTGGGGTTGCCCAGCAACCAGAGCCGGACAGTTCAGATTCTGTAG
TGTGCAAGGAGTATCCACAACTGGGGGTGGAGCAGCTGTACAGTGAACGG
ATCACAGTGTCCCTGAGCGAGGTTCCCCCCAGTTTCAGTGACGAGGCTGT
CCTGCGCTGGCAGGCAGTGAGACATCTGCAACTACGCTTCTATGACATGG
ACCTGGTGCTGGGGATATTCGAGGACCAGTTTCACCACTACGCCGTGTCT
GAAGTCTCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000019 | genome | Sc0000019:1966446..1973182 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96433_cuf3 |
| Biotype | protein_coding |
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