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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96437_cuf19 >transcript:BL96437_cuf19-protein ID=transcript:BL96437_cuf19-protein|Name=transcript:BL96437_cuf19|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
AVLAQGLQVLNVQRADMGTYSCIALNDVMIVSKFSQLLVRGPPHITQGPR
SYNLSTGEAIKLRCETIGVLTPTITWLKDGHQVPQDGRHVWLPGGGLQLF
RVGLSEAGLYTCLAENRFGQDRASAVINVTGPPLPEDASHSGVIAGVIIA
VLVVFLFVGAVLLFRYLRNRKSPYTIKMPEKLRNFRFPSRNTHSIALDQT
VAFLGESVELDTKPPESYPDQQPIYVPDPGPQNKYVKL Run BLAST on NCBI mRNA from alignment at Sc0000019:3524750..3534254+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96437_cuf19 ID=transcript:BL96437_cuf19|Name=transcript:BL96437_cuf19|organism=Branchiostoma lanceolatum|type=mRNA|length=9505bp|location=Sequence derived from alignment at Sc0000019:3524750..3534254+ (Branchiostoma lanceolatum)
TCGCTGTGCTGGCACAAGGTACCCAAATCACTCTTCTTAAATCCCCCTCT
CACTGGACCCACGGCACGCTGGCGACGTCGCTGCGTCCTAAAGCCCCCCT
CTCACTGGACCCGAGGTACGCTGGCGTTGTCGCTGCATCCTAAACTGGAT
TTGTGTTGCCCTTGACTTTTTAATGGGAATATCATGCAAAACGTACAGAT
ATGACCAAAAAGACAACAAAACACACAAAGCTTAAAAAGTTTCGTTTCTT
GTGGATGAAATTCGTTGAGTGCTTTGTCAATTCGATCGGCTGCAGCAACC
ACACCAGCATGCCGCGGGCCCAGTGAGAGGGGGGCTCTAGGTAAGCATGA
AGGGCTTTAGAGTCAGAGTTTGCACGTCCGCATGTTTAATCCCCACCTCT
TTGCCTGTTTGTACCCCCCCCCCAGGTCTGCAGGTGCTGAACGTGAAGCG
GGCAGACATGGGCACGTATTCCTGCATCGCCCTGAAGTCTGCAGGCTCCA
GGCTAACTGTCCCATGTTTGTACCCCCCCAGGTCTGCAGGTGCTGAACGT
GCAGCGGGCAGACATGGGCACGTATTCCTGCATCGCCCTCAACGACGTCA
TGATCGTCTCCAAGTTCTCCCAACTGCTGGTCAGAGGTCAGTAAAGGATT
TTGTACAAAAATAGACAAAAGATAAAGGTCATGGCAGGAGGTTTGATCAA
AGTATTGTAGTAAGACATAAACTGCAAAATGTAAGGCTCTGATTCAGAAA
TGGTGACCATACGGTCCATAGTCTGATTATACTGTCTTCTACTGTGCTGC
CATTAAACAGTACAACCTAGAGCAGATTACCATCCTGACACTTTGTGCCG
TTTGTCAGAGTTGTTCGCTTCCTCTGCAAGACACAGATTTCTCCTGTGAG
TCGTTCTGTCCGAGTCATTGACTGGCGCTTCGTGTGGAGGCGCGGGCAGT
CGTAAACTTCAGATCTGTCTGAGTCAGGGCTTGTTTTAGTGTTGGTGGGC
GGGTCAGGGCTTGTTTTATTACACAGGTTTAGTTTGGGTTGAGTTTCCAA
TGTCAATCTTTAGGTAACGCAGAAGTGACACAGCAAATCCTGGACATGCC
AGCCAAGTTATCCATATTGTTGTATTGTATCATAGTCATGTAGTGATAAT
CATGGACAGGGACTTCCAGAAACAATTGATGGTACGTTTAGCACCAAGGA
CATTCAGTTCAGCACCAAGGACATGTCACAGATTCAGAGTTGTACTTGAA
AACTCTATCAGTCTGGAATTTTTCTGCCTTGTACTGATCCCATGTGATGG
CCCAGGATTGGCCTGTGTGTCTGGCCCTAGTGACTGCTCTCCAAGCAGAG
GAGTGGTTTTTGATGTGTTTTTAGGCATTTTATTGGGTGGGGGGGTTCTA
CTTTGTGGATTATGTGGCCATGGGTTATTGAGAAAGAAAAAAAAAACATG
ACAAAGTAGAAAGCCCCCTAAAATCTAGAAGGACCCACTCTAGTGATGGC
CCGGTGTTGGCCTGTGTATCTGTCCCTAAGGATGGATCAGCACTGGCCCA
TAGTGGCCCGTGTGTCTGTCCCTAGAGACAACCAGGATTGGCCTGTAGTG
GCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCGTAGTGGCCCG
TGTATTTGTCCCTAGAGATGGCCACGGTTGGCCCATAGTGGCCCGTGTAT
TTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTC
CCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTCCCTAA
GGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTCCCTAAGGTTG
GCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTCCCTAAGGTTGGCCAC
GGTTGGCCCATAGTGGCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTG
GCCCATAGTGGCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCA
TAGTGGCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTG
GCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCG
TGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTAT
TTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTC
CCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTCCCTAA
GGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTCCCTAAGGTTG
GCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTCCCTAAGGTTGGCCAC
GGTTGGCCCATAGTGGCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTG
GCCCATAGTGGCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCA
TAGTGGCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTG
GCCCGTGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCG
TGTATTTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTAT
TTGTCCCTAAGGTTGGCCACGGTTGGCCCATAGTGGCCCGTGTATTTGTC
CCTAAGGTTGGCCACGGTTGGCCCGTAGTGGCCCGTGTATTTGTCCCTAA
GGTTGGCCATGGTTGGCCCGTAGTGGCCCGTGTATTTGTCCCTAGAGATG
GCCCAGGATTGGCCTGCAGTGGCCCATGATAAAGTACCCAATTATCTGTA
TTAAAACCAGGCTACATTGAATTAATCTCATTACAGGCTGCAACAGCTCA
GCGCCACTCCCTCCCAGCGGACACTCAGGTCCAGATGCTGAGAGTCTGTG
TTGTTTTAAACAGTTGTAACAGTGGGGTTCAAGCCCCTCCAACTGACCAG
TCTAACTGGTCTAGACCTTTTAGCCTAGTGGTTAAGGCGTGCGACCTGTG
GACTGGCGGGCCCGGGTTCGATCCGCTCTACTCACTTCTTTGTTTCACAG
GTATTACAGTCGGGCTAAACACGTTTTAACACAGAAAAAGGCTATGCGAC
TATTGTATTGACATTTTAAGCTATATTGCAGCCATGTGTGCCACACGTTG
CGCCTCTATATGGCGATATTTGTGTCTCGAGTTGCGCCAATTCGAGTTCC
AGAGCCTACCTCTTTAAACAGCCCTCCTCTGTAGGTACTACAGTCAGGCT
GAACACGTTTTAACACAGAAAAAGACTTTCCAACTACAGTCAGGTTAAAC
ACGTTTTAACACAGAAAAAGACTTTCCAACTACAGTATTGACATTTTAAG
CACTGAGGGATTTTGTCTCATCGGCCCCATCTGGCTGCCTCCCCTGACTG
AAAATTAACCAGGGGTGAGCCATTAATTAACGGGGGGAGTCATTATTTTC
CTGGGGCCGGCTCATTGCGGATGACACAGTCGGGGGCTGTTCACTCAGCC
GAGAAATGGGAGCCATAACAGCTCGCACAACTGACACAGAAATGTGAACC
ATAAAAGCTCGGAACTGACACAGTTGTCGGTGGCATTTTTTTTAAAGTGG
TCAGTAGTAATGTTTGTTTTTAACAGTCCAATGCAAGGCCATAGTTCACC
ACTTCTTTTTGTACAGTTTCTTTCTTTCTTACCGTGACCCCATCCCTCCA
CTTCGACCTTGTTGAAAAATGGCCGTGTGGCCGAACAAGCATTCAAAGCT
GAATATTAGGCATTGACCTGACTTGACTTCTAGGCATGGAACTAAGTTGA
TGGAAGATGACGATTACGCTAGGAGATAACAGTGAACTTGGCTTTGTAGG
CTTGTACGTAGGTTGTATACGGGAGGAAAACAGTTTTGTCATCGAGAGAG
TTCCATAGTTTGGCAGTACGTGGAAAGAAGCTGTTTGCTGTAGAAGAAAT
TAGAAAGTGGTGACACAATAGTTGGATGAACATTAGTGGCACGACTGGAC
ACAAAATTGTGATTTTGCTTTCTCAAGGAGGTTAAAATACCTATTTTCCT
CCTTGGTTTTCTTAAGTAATTATTTTTATTTTGTACCTGGATGTTTTTCT
GAAAGTCCCCATCTCTGTCAGAGGTCCAATATATGTGACGAGTAACGCGT
GAAATTGACGGATGTTAATGATACTCACCAGCGTCACACTGCAGTACCGT
TACCATGGTTACATTGCCTGTCCTCGAGGGACGTTTTCTCACATCAGCGG
CTCCGGCCAGCTGTTTCAGGCTGGGTGACTTATGCTGTGGGTGGTGGGAG
GCTGGGAAACAACTTGGCTCAGAATAAGACTATCGTGTGGTCTGAGACTG
TCGACTACAAATGATAAGGGCCCTTCTTCAAGATGAACGGATGTCTGCCT
TGTGTATATATATATGTATATTGTAGAGGGAAAGAAGATTTATTGGTGGA
ACAGAAAGTACATGTAAGGACTGCTGTTTCAGCCTGGATGACTTCTGCTG
CTGGGGGGAGGCTGGGAAACAACTTGGTTTAGAATAAGACTCCCAGCTAC
TCTTGCCATCGTGAGGTCTGAGACTACGAATGATAAGGGCCCTTCTTCAA
TCTCTCAAGACAAAAGGATGCCTGCCTTGTATATATATATGTTTATTGCG
GAAAGAAAGAAGCTTTATTGGTGGAACAGAAAGTACATGTTAGGGCCTCT
GTAGGCAGGTTTTACCGTTTACCTGCATTGGGCAATGACTGAGGAGGAAA
GTCCGTCTCCACAGCATATATGGCTGGCACAAATAAAATCATTGAACATC
AAGGCAACTTTAAGTCACACCCTAGGTATACATGATTGTATGGTCATGCT
TTTTTTCTTCACATATTTCCTCCTGGCCTTTTTACTGGCATTGAAGTCTG
AGGTTCTAGGGTGTTCTTTTATATCATTTTGTGTCAGTGGCACGCTGATG
TAAATGTGTCCCGACTGGTGCATTCCCAGCTGCCCCTCTGCGTTTCCCTT
GAGGCTCCAGCAATAAAGTGGGGATTAAAAGGGATCATTGTGAATCCATC
CGGTGACCCAATAACCTCTGAACCATGACCCAATAGCCTCTGAACCATGA
ACCATAAGCGATATTGTCACACGTGGATGAACAAAATTAATGTGCCCTGA
GATTAGACTAGGAAATCCTTTTTTTATTTTATTCAAGAGGATGTAGAAAT
ATCTGGCCTGTCTTGTGTTGCCGTTCCCAAGGGCTACAACCCAGTGGATT
AAAAGATTTGGTCCAATTATAGTTTTGGTGTTGTTTTACAGTATTTCCTC
TCTGAAATGCTTGACGTGAATGTGAGATTACATGGGACCCCGCTTTGCAA
CACAAAGGACAGTGACAGTTCCTGTGGTGTTGTCTTACCATAGGAACCAT
CCCAACATCATTCACCTTTGAGTGACATTTTCGCATTACGATCCTTACGA
GTTAGGGACTTTGGCATGTTAAACCGTTTTTTCCAGCAACGGTACTAGAC
TTCAAAGTGTTGATTCGTTCTGTTAGTTCATTCTAGTGTCACACTGAAGA
AAAGTGATGGATGTCACTCGAAACGTCCGGAAATAAATCTCCGAATTGTT
ATCCAGTTGTAGAGTTTGAATCATCTTTATACAATCACCACCATTAAAGG
TCATGACCTTCGTGTCCCCTGCAGGTCCTCCGCACATTACCCAGGGTCCT
CGGAGCTACAATCTGTCCACCGGGGAGGCCATCAAACTGCGGTGTGAGAC
CATCGGGGTACTGACCCCGACCATCACCTGGCTCAAGGACGGACATCAGG
TACAGTACAGGATAGTGGGGACGAACTGTAGTATGAGACCAGACTGTAGT
ATGAGACTAGACTGTAGTATAGAACCAAACTGTAGCATGAGACCAGACTG
TAGCATGAGACCAAACTGTAGCATGAGACCAAACTGTAGCATGAGACCAA
ACTGTAGCATGGAATCGACTGCTAGGATGGGACCCAACTGCAGTATTTAT
TTTTTAAGGCCAAACTGTTACAAAGTATGATTCCAAACTGTATCATGGGA
TCAAACTATAGTATTGGACAGAACTTAAATTGTAATGGAACCAAAGTGTA
GTCATTAACTGAAGTATGGGGCAACACTGAAGTTGCTATATGGGTGCAAA
CTGTAGTTCCTTTATGGGAGTAAACTGTAGTATGGAGCCAAACACTAGTA
TGGGACCCAACTGGACTATCAGACCAAACTGTTATAAAGTATGGCACAAT
TTCTTAAAACTCATAACCGACCCTCTCCCCACAGGTCCCTCAGGATGGGC
GTCACGTCTGGTTGCCGGGCGGCGGCCTGCAGCTGTTCCGCGTCGGTCTG
TCAGAGGCCGGGCTCTACACCTGCCTGGCGGAGAACCGCTTCGGGCAGGA
CCGCGCCAGCGCTGTCATCAATGTGACAGGTGGGTACCACATAGTACTCA
TCTCTCATCTATCCCTTAGTCTAACTATTTGACCGTTGTGGCCCCACAGA
AAATCTGGCAACCAGTTTTCTCCACCCTTCTCAGTTTTCAGAGGACATTT
TACTGGACTGCCACAAGCCATGAACCGTAGTGTCTGATATGAAATGTAAC
CTTCCCCGATGCTTTAAATAATATTACTGCTCTAAAGATCTGACTGTTCA
GGTAAAGCCAGTAGTAAGGCCGTAAGCTACAACTGAATGTTATTTTTCAG
ACGAGTTGTACTAGTACTGTTGATATTGTTGATGATGTTGATGTTAATGA
TGCTGTGTTGTCACCAGGTCCGCCTCTCCCGGAGGATGCCAGCCACAGCG
GCGTGATTGCGGGCGTGATCATCGCGGTCCTGGTCGTGTTCCTGTTCGTG
GGCGCCGTGCTCCTCTTCAGGTACCTGTGCATGAAAATGATAGTGATGAT
GATGTAGATGATGACAATGTAGACGATGGTGGTGATGATGACGATGTAGA
TGATGTTGATAATGATGATGTTGATGTAGATGATTTTGTTTGTTTTTGTT
TGTTTGAACCTTTGATGACGATGTAGATGATGATGATGTTGGTACTGATG
TAGATGATAATGATGATGATGGTGTAGATGATGTTGGCAGTGATGCTGAT
GTTGTGCTGTCCTCCTCAGGTACCTGCGCAACAGGAAGTCCCCCTACACC
ATCAAGATGCCGGAGAAGCTGCGAAACTTCCGCTTCCCGAGCCGGAACAC
GCACAGCATCGCGCTGGACCAGACGGTCGCGTTCCTGGGGGAGTCGGTGG
AACTCGACACCAAGCCGCCCGAGAGCTACCCCGACCAGCAACCCATCTAC
GTGCCTGACCCAGGCCCACAGAATAAATACGTCAAGCTATAACCGACCCA
GGCCCACAGGACCCGGGTCCACACGACCCAGGTCCACAGGACCCGGGTCC
ACACGACCCAGGCCCACAGGACCGGGTCCACACGACCCCGGCCCACAGGA
CCCGGGTCCACACGACCCAGGCCCACAGAATAAATACGTCAAGCTATAAT
GTCCGCAGGCTCCCCGCTCAGGCCTAGGAAAAATGGTGTTTCCGGTTACC
AAGGCAACCCTAGCAGAAACCTGCCGACACTAAGCTTTTATTTGTCGACC
ACTAGCACTGTATGAAATTTTTGATCTGACTGATGAGAATTCAACACAAA
ATCGAAGACACCTTGCATATTTTTTTCAGCCTAATGATATAATGTTACTT
ATGCTTGTACAATGTATATCAGAGTGTATGAATATTATACGATGTTGAAA
ATATGTCATAATATGATGCATTACAGTTTTGCTATGTTATCTGAACGGAT
CACTTGGCTGAAATCTAAAAAAAAGGAAGAAAAGAGAATCTCTACCTACC
GACCCTACTTTCTTCAGTGCCATAACCGGAAACACAACTTTTTTCTTAGG
CCTGATCAAGTTGTAAATATTCAGAATATCCTCAGCAAAGGTTGTAATTA
ATAATAATTCATTCTCGCCCCTTTTCACTGACCTGAAGAATCGAAAAGTT
CGAGCTTTGCATGGTCACCTGGTGTTGCAGGAAGGGCTGAGAGTCAGAGG
TGTTTGTTTGTTTGTTTGTTTCACCAAGAGAAATAAATAAACAAGGCAAG
GGACTTGTGAAGCACAAAGGCTTTAATAACTGCCAAATTTGCCAGATAGC
AGACAGACAGATTGTGTCTCATATTTTGTAAATGTTTTAAACCAAGAGTA
CTAGAGTAAAATGGCCTAGCCTTCCCTAAGGTTGGCGCTTTTATTTATTT
AAAACTCTTTGTCAGCTTTTAGCTGTAAGTTATTTTTAAAGTGTTGGAAT
GTAAGAATATGCATATCATTTACAGTGAAGTATGTATCACCCAAGACCAG
CTAACTTCCATTCTCTAGGACTTGACAGAATCTGATGTGTATTTTCCAGT
ATTAGTTGCCAGGAGCTGATAGTTACTCTACGGAACACAAAACCTTTCAA
CTGTCTCTTCATATTAACTGTACACAACAGGAAAGATTCTCCTGAAGAAT
GCCCAGCTTTACTGGGCATACTAATGAGGCCTGTTGTTATTGTTTTTGTT
GTTTGGATGTTGCATGCTCGAGCCATAGCATAGTCTAGTACAGAGTTTTT
ATTTCCTATTTTATTTTCTGTTTTTGAGTTTTTGTTACATTGACTAAATT
AGATGTCCATGTTTCTGTCTTATCTTTATTCATGAAGCACACTTAATTCA
CTCGTCTACAAGCTAATTAGACATTATTTTTCTTCTTTGATGTCCGTTAA
AGTAAATAGTGCTGATTTTGATGTTCTGAAGAGTTTTTATTATCATCTGT
CAGGCTTCAGTTTCAGAATGTATTTATTTTCATGAAGTTATGTTTCTTAG
TTAAAAAATTAGTTAAATGTTTCAAGTCATGGACATACAAAAGTGCGAAT
AGAACATGTATGCAAGTCTATGATTATTATAAAAAGGTTTTAGACATTAA
GCCATTAGTGTGCGCATCTACACTACTGATAGGTAATAGTCAAGAAAAAT
GCTATTGTCATGGAAATACTCACATTTGTATATATTGTTGGCAATTACAA
AATTATAAGCAATAAGAAAGGGGCACCACCAATGCAAGACGTTAGGCCTA
CATTAAGCTAAGGTTTACAATGAACTAAGCTAACGAAATGGTTAAATCAA
AACTGAATCAGAACTTGTTACTGACCATGATTAAGACAAAAGAAAGGCAG
AAACGCAAGAGACTCGGAATTTAAAGCAAGGCCTGAACCCTGTCTAACAG
GAGGCAAGACACGATGCTGCAGTTTTGGAGTTATTTCTTTAGAGTTGCAG
ACAACAGCCATGTCATGGGCATGCGAGCCGTTCAGTTGTTTGGTGGTAGA
AAGTTATGTAGATTTTACCTGGATGTCATCCCGCTTCTTTTCGCGGGCGG
TTTGCACTTTCAAAATATGTCCGCAAAAAGAAGATTCCGAAGAATATTTT
CGACAATCGTAGATAGAGTAGGGAATGACTACAATAAACCATTTTTGGAG
GGGAT Coding sequence (CDS) from alignment at Sc0000019:3524750..3534254+ >transcript:BL96437_cuf19 ID=transcript:BL96437_cuf19|Name=transcript:BL96437_cuf19|organism=Branchiostoma lanceolatum|type=CDS|length=717bp|location=Sequence derived from alignment at Sc0000019:3524750..3534254+ (Branchiostoma lanceolatum)
GCTGTGCTGGCACAAGGTCTGCAGGTGCTGAACGTGCAGCGGGCAGACAT
GGGCACGTATTCCTGCATCGCCCTCAACGACGTCATGATCGTCTCCAAGT
TCTCCCAACTGCTGGTCAGAGGTCCTCCGCACATTACCCAGGGTCCTCGG
AGCTACAATCTGTCCACCGGGGAGGCCATCAAACTGCGGTGTGAGACCAT
CGGGGTACTGACCCCGACCATCACCTGGCTCAAGGACGGACATCAGGTCC
CTCAGGATGGGCGTCACGTCTGGTTGCCGGGCGGCGGCCTGCAGCTGTTC
CGCGTCGGTCTGTCAGAGGCCGGGCTCTACACCTGCCTGGCGGAGAACCG
CTTCGGGCAGGACCGCGCCAGCGCTGTCATCAATGTGACAGGTCCGCCTC
TCCCGGAGGATGCCAGCCACAGCGGCGTGATTGCGGGCGTGATCATCGCG
GTCCTGGTCGTGTTCCTGTTCGTGGGCGCCGTGCTCCTCTTCAGGTACCT
GCGCAACAGGAAGTCCCCCTACACCATCAAGATGCCGGAGAAGCTGCGAA
ACTTCCGCTTCCCGAGCCGGAACACGCACAGCATCGCGCTGGACCAGACG
GTCGCGTTCCTGGGGGAGTCGGTGGAACTCGACACCAAGCCGCCCGAGAG
CTACCCCGACCAGCAACCCATCTACGTGCCTGACCCAGGCCCACAGAATA
AATACGTCAAGCTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000019 | genome | Sc0000019:3524750..3534254 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96437_cuf19 |
| Biotype | protein_coding |
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