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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96450_cuf2 >transcript:BL96450_cuf2-protein ID=transcript:BL96450_cuf2-protein|Name=transcript:BL96450_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=198bp
EGFKLDADGTRCIDEDECSQDNWRPCHQVCQNTVGSFQCSCRHGFRLLNN
GRSCMDINECTEGRPRCHHQCQNTYGSYKCTCRPGFRLLEDGSTCGDIDE
CAVTAEICQGACVNTIGSYQCACPQGYNMEGGRCVDVDECRLPDRGRCEQ
MCINNVGSYFCSCNRGFALTSDGRGCGDIDECGLYGTRVCQQGCRNTY Run BLAST on NCBI mRNA from alignment at Sc0000243:341115..346544+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96450_cuf2 ID=transcript:BL96450_cuf2|Name=transcript:BL96450_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5430bp|location=Sequence derived from alignment at Sc0000243:341115..346544+ (Branchiostoma lanceolatum)
GGAGGGGTTCAAGCTGGATGCAGATGGCACAAGATGTATCGGTGGGTTAC
CCCTAACTTTTATATCACATTATTATCCCTGCCAAGTGATAATTGCATGT
AGACAAGTGATTATATTTCATACTTATCTAGTAACTATTTTAATGGATGC
AATGTATGGCGAATTGCTAAACAGTACAGTAACTATATAACAAGTCTATT
CACAGGAACTATATGATAAAGTAAATGGTGATGATGATGATGATAATCAT
GATGTACAGGAAACATTGTGTACATTCAATTTTTATGTCTCTTCATTTGA
ATGACACAACATACAAATAGCTAAATCTGACCCTGTATCATTTGAATGAC
ACACCCTAGAAATAGCCAAATCTAACTCCGTATAATTCAAATAACACACC
TTACAACAGCCTAATCTTACCATGTATCTAGATACATTGGCCTAGATATA
AGTAAATCAAACCAAGGCATGACATCCTGACTCAGACTGCAGGCTCAGTC
TGCATGCCTGTTGTTGGTTTATCTGATGTTCTGTCTAAGCCGTTTGGTCT
GTTCCAGATGAGGATGAGTGTTCCCAGGACAACTGGCGCCCGTGTCACCA
GGTCTGCCAGAACACCGTGGGCAGCTTCCAGTGTTCCTGTCGACACGGCT
TCAGGCTGCTGAACAACGGCAGGTCCTGCATGGGTAGGTATCGTGCATGG
GTAGGTGTCCTGCGTGGGTAGGTGTCCCGCATGGGTAGGTGTCCCGCATG
GGTAGGTGTCCTGTATGGGTAGGTGTCTTGTATGGGTAGGTGTCCTGTGT
GGGTAGGTGTTCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTA
TGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGT
GTGGTTAGGTGTCCTGTGTGGGTAGGTATCCTGTATGGGTAGGTGTCCTA
CATGGGTAGGTGTCCTGTATGAGAAAGTGTCCTGTATGGGTAGGTGTCTT
GTATGGGTAGGTGTCCTGCATGGGTAGGTGTCCTGTAGGGTAGGTGTCCT
GTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCC
TGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTC
CTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGT
CCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTG
TCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGT
GTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGG
TGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAG
GTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTA
GGTGTCCTGTATGGGTAGGTGTCCTGTATGGGTAGGTGTCCTGTATGGGT
AGGTGTCCTGTATATAGGTAGGTGTCCTCATCCTGCATTGGTAGGTGGCC
TGCATTGGTAGATGTTTTTTGTATGGGAAGGTGTCCTATATTGGTTGAGT
GCCCTGCATGGGTAGGTGTCCTGTATGTGATGACAATGTGTTGCAATGTC
CATTGTAATGTCTTGTCTTTGTCAGCAGGGCTAGCCCTTTGTAATATCCA
CATGCTAATTGGGCAGCCCTGGCTGTGCATGCTGTTAGGCAAACCAACAA
ATAAAGAATAAAAAACGTTGTGTTGTCAGATATCAATGAGTGCACAGAAG
GTCGTCCCAGGTGCCACCACCAGTGCCAAAACACCTACGGCAGCTACAAG
TGCACCTGCAGACCGGGCTTCCGGCTCTTGGAGGACGGCAGCACCTGTGG
AGGTAGGGGTCTGAATCTGTCCAAGCCGGAATATATATAACCTCCTTTTG
GAGTAACGCCTTAAAAAACTAAATTTAGTCATCTGTGTAGCCGGTATAAC
AGCCCTTCAGCATAAGACACCAGCTTTCCAGGCAAGTTGCCTGGCAGCAG
CTGGTTATGTTACACTGAACCGTTGCACATATTCATTTTTCTGTTGAAGT
CATGATTTGCAGCATTGTATGAACCTTAGACCCATTTACACGGGGGAAAT
TTTCTGGACGTATGACAACAACGTCCAGAAAATTTCCCCGGTACGTAGGT
GGGTACGACGTCACCTTTTTTCCTGGGTGTGAACCGGCTCTGCGCGACGT
ACGACAGGCATTTTTATGGCCCACACGAACCCTGGATGTAACGTACGACA
AGGTCATACAGGCCATAGAAATGCCTAACGTACGTCACGCAGGGCCCGTC
CACACCCAGGAAAAAAGGCGGTGTACGTCAAAGACATGCGTCGTTGTCGT
ACGTCATCGTCGTATGTCCACAAAATTTTCCTAGTGTGTATGGGGTCTTA
ATTGGCCTCGAGGCATAACCAACACAATTGCCAAGGCAAAGAATCAGTCC
CAAGTTGTTGAAATTTGTTTCCTTGATTGTTGATTGCATGGCACTGTCAA
CTCTAATCTGTGGAAAAGATGACAAACTGAAGAGCGGTGGAGAGAGAGAT
AGAATCTGTGGACTTCTCAAGTAGCTCTGCCTGGGATTCTTCTAGAACAA
GTTGAGGAGACTCAATTTGAGCAATTAGTCTCAACCGCTCATGGCAAAGC
TGACAGCAGGTTATCTGTCAGGAGGGAAGGGTCGTATCAAAGTTCAAAAT
GTTAAAAGAGGTTTTATTCCTTTGACATTAGATGTGCCAATTCAAGGGCT
TGATAAGTGAATGGGCCTTTATGGAATGCTGTATGGAATACTTAGTACAG
GGGAACTACAACAATCTGTAATCGTTTGATATCTTTCACTAATAAAAAAA
GTGAACAAGAAAGGTCACTTTTCAATAATAAAGATAAAGATCAGCATCTG
GGATAAGTAAAAAAAATTATCTTTTCACCTGATGTCAAGTAAGGTGCAGG
TATAAATTGTGAGTTAACCTTGCGGTCAACAATGTTGATGCAAAAGACAT
TCCAATCTTAAGGTCAAGAAAACAAGACACCCCATTGTTTTAGCTTCTGC
CACCTGTGAATTTATTAACCTTAACAAGCTGCCTGAGGGTCCAGGTCACA
ACACAGTTTCGTGACTAGATGTCACAGACATGTGCCCCCTGTGGAATACT
GTTTGGGCATCAATATTGATGATTATGATCTATTTACATGTATCACATTT
TGGATCTTCAAACTTAAGCATTTTTCTTCTTTTATAAAGAATAATTTATT
AGATATTTTGTATTTCATATTTAATAAATAACTGAATATGGAGAGCAGAG
AAAGTAAATGATTTGTCTCAAATCCATTGGCCCACCCAACAATATTTCTT
GTTTTAGTTTTGATATTCAATATACAGCTGCTTCAAGTTTTATGACTGAT
GACTGAATTTGAAAATTCCACAGCAAATACAGAAAAGTGTAAATGTTGCC
GATTATACAAATCTTATTCAATACACATTTACCGGTAGCTTATTTATCAA
AATTACTCTTTTGAGCCCCATGGGTCTAATTGTACCACATGATGACATAT
CAAAAACGTCTGTTAAGGGTCCAATAGAAAACTCTAAAACAATAATCATG
ATAATCCAATAGTGTCTGTGAATGTCCAATTTAAAGTGACAACCTTGTGG
GTGATAAACTATATCTAAAATGGCAGACAAAAGTCTAGATACATTGTGCT
GGTGTCTCCTCTGCATGATGTGCCCACATCATAATTATGTCTTTTCCCCA
GACATAGACGAGTGTGCAGTGACTGCCGAGATCTGCCAGGGGGCGTGTGT
GAACACCATTGGGTCCTACCAGTGTGCCTGTCCTCAAGGCTATAACATGG
AAGGAGGAAGATGTGTTGGTGAGGTCCACTGGTTGTTGTAGCTGGGAGAG
AATTTAGTCTTTATGAAAGCAAGACAAAATTTGTTGCAACAATGTAAGAA
AGGCCGATAAGAGAGGAATAATAATCAGGGAATTCAATAGCACCACTCCT
TCACTCTGCCAACTGGCAAAATCATTACTTACCATTACTTACTAATCATT
ACTTTGAACAGTTATCACCTCCATGAAAACTGGAGGTATAGTTTTTGGTC
CGTTTGTTTGTGTGCATGTCTGTGTGCGTGTGTGTCCGGTGCAATATCTT
AAGAACCTAAGGATGGATTGTGATGATATTTGGTATGTAGGTAGGTGTTG
TAGACCCAATTGTCAAGATTGATTATGGCCTCCTGTTGGCCATCCACGGC
ACTGCAGGAGAACTTAAGGTTTCCTGTGGTCATGTTTATGATTGGTTTCT
AGTCTGTGTTCCTTTTCCCACGCTGTAGATGTGGACGAGTGTCGGCTGCC
AGACAGGGGGCGGTGTGAGCAGATGTGCATCAACAACGTGGGCAGCTACT
TCTGCTCCTGTAACCGGGGCTTCGCCCTGACGTCTGATGGCCGGGGGTGT
GGAGGTAGGTACAAAACACATTTCAGACTAGGACCACCCTCCTCTAGCAG
GCTCGAAGTGCTTGGCAACAAAGCCTCCAGCATCTACCCTGTTCTTCTGC
CCCATTAGGTTTTAGGTATTGGTGACGTCACCATCAACAGCTTTCAAGCT
CGTCTTGTGGAAATCCGGAAAGGTTGCTGGGAACCTACCAGCCAATCAGG
ATATGTCTTAATAAACAAACAAAATGAGGGGTGTTTGTGCCAAATAAGGC
TAGCTCATTAATTATTTATGAGCAACTGTCAGTAACATCACCAATACCTA
AAACCTTGGGTCAGAAGAACAGGGTCGATGCTGGAGGCTTTGTTGCTGAG
CGATTCAACCCCTTCTAGAGGAGGGTGACCAGGACAGGCTTCAACAGACA
GACCAGGGATGGAGTTTTGTACATGTCCATGTATAAGATTTGTATAAAGT
TCTGGTGTAACCTGTGTTTGGGTTGTATTGTATGGACTGCGGGAAGAGAT
TTTCTTATAAAAAACGGAGTTGAAATTGTATCGTCATCTTGTGGAGTCTA
ATGCCATCTCCATCCTTCCCAGTCCTCCATATAACTCTAGGTAGCACTAT
GTCATAATAATAATCATGACCGAAAAAGCTTTTCACTGTTTTTTATAACA
ATGGTTAGGCCTGATTTGACTGTACATTATCGGTGCATGTACATTGTAGT
ACCTAGTATGTACCCATCACAGAAGATATCCCTAAGAGCAGGAAAGTGGG
CAACACAACTTAGCTTGGAATGAGAATTACTTTTCATAGCTTTAACCTTC
TCCCTGCTGCCTAACTCTAACTGTATGCCTAGCCATGTTAATAATGAAAG
CTGAACTTTACTTACAGATATCGATGAGTGTGGACTTTACGGGACCAGAG
TTTGCCAACAGGGCTGCAGAAACACCTACG Coding sequence (CDS) from alignment at Sc0000243:341115..346544+ >transcript:BL96450_cuf2 ID=transcript:BL96450_cuf2|Name=transcript:BL96450_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=594bp|location=Sequence derived from alignment at Sc0000243:341115..346544+ (Branchiostoma lanceolatum)
GAGGGGTTCAAGCTGGATGCAGATGGCACAAGATGTATCGATGAGGATGA
GTGTTCCCAGGACAACTGGCGCCCGTGTCACCAGGTCTGCCAGAACACCG
TGGGCAGCTTCCAGTGTTCCTGTCGACACGGCTTCAGGCTGCTGAACAAC
GGCAGGTCCTGCATGGATATCAATGAGTGCACAGAAGGTCGTCCCAGGTG
CCACCACCAGTGCCAAAACACCTACGGCAGCTACAAGTGCACCTGCAGAC
CGGGCTTCCGGCTCTTGGAGGACGGCAGCACCTGTGGAGACATAGACGAG
TGTGCAGTGACTGCCGAGATCTGCCAGGGGGCGTGTGTGAACACCATTGG
GTCCTACCAGTGTGCCTGTCCTCAAGGCTATAACATGGAAGGAGGAAGAT
GTGTTGATGTGGACGAGTGTCGGCTGCCAGACAGGGGGCGGTGTGAGCAG
ATGTGCATCAACAACGTGGGCAGCTACTTCTGCTCCTGTAACCGGGGCTT
CGCCCTGACGTCTGATGGCCGGGGGTGTGGAGATATCGATGAGTGTGGAC
TTTACGGGACCAGAGTTTGCCAACAGGGCTGCAGAAACACCTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000243 | genome | Sc0000243:341115..346544 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96450_cuf2 |
| Biotype | protein_coding |
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