transcript:BL96452_cuf12 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96452_cuf12
Unique Nametranscript:BL96452_cuf12
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96452_cuf12

>transcript:BL96452_cuf12-protein ID=transcript:BL96452_cuf12-protein|Name=transcript:BL96452_cuf12|organism=Branchiostoma lanceolatum|type=polypeptide|length=159bp
EFECENTIGSYRCVCPAGFRLNEEDQSTCLDIDECEEQVCSQQCMNSYGS
YKCNCDLGFVLDVDGFNCTELKLFPCTFEGVLYESGSTWEVDACTECSCN
DGKILCGECPALPCTATEQPEGDCCPRCKACIQDGLEYQHQDLWSPTFDS
CQICTCLGG
Run BLAST on NCBI

mRNA from alignment at Sc0000243:376171..380895+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96452_cuf12 ID=transcript:BL96452_cuf12|Name=transcript:BL96452_cuf12|organism=Branchiostoma lanceolatum|type=mRNA|length=4725bp|location=Sequence derived from alignment at Sc0000243:376171..380895+ (Branchiostoma lanceolatum)
GTGAGTTTGAGTGCGAGAACACCATCGGCAGCTACAGGTGTGTTTGTCCA
GCCGGATTCAGACTCAACGAAGAAGACCAGTCCACCTGTCTCGGTAAGGA
AACTAAAAGCAGCCTTAACTTTTTCTGTAGTCTTTGTTGTTTTGTGGATC
AAACTTAAGCATTGAATTCAAGTTTATCGGAGACATTGTCATCTAGTAGT
GGTAGCATGACTCAAAATACTAAACTTAAAAAACAAATGCTGAAAAGGAA
AGTTTGGTCTATGGCCTGTCTCATCAATGGAATGCTACATGACATGATAG
GAAAATTACTGGATAAACTTGTATTTTCTTTATTTCTGTATTCTGGTTAT
GTATGTTATGTGTGATTGTTATTTTGTATTCAACCTGTCATTTTGTCATA
ATAATTAATGTGCTTCATGTATACAGGATCACAGGAAGAATAGCTGATAT
GTCAAGCTAGTTGTGGATCTTAATAAGGTCAAAGTTGTCATAATTTGAAT
AGGTCAAGAATGGCCCGTCCAGCAAAGTTTATTGCAGAATATAAAAACAG
CCACAGACTATCTTTGATAGAATGTCCTATTGGCCACATGTGAATGGGTT
TATGACATCATGCAAAAATATGATGGTCTGAGTCATCTAATATGTACTCT
AACTTGAATGTGTGATTGTTATATAATGTAGTCCTGAACATGTTGGCTCA
AATTTCTCAAAGCTGCTGTTGTTGATTCTTGTTTGTTTGTTTGTTTGTAT
GTCCCAGACATAGACGAGTGTGAGGAGCAGGTGTGTTCCCAGCAGTGCAT
GAACTCCTACGGCTCCTACAAGTGCAACTGTGACCTTGGCTTTGTCCTGG
ATGTAGACGGCTTCAACTGTACGGAACTGAAGTGTAAGTTGTGCTATTTC
ATCAAACATCATTTTTTCAAGACAACTTCTGTCATGTTTCACTTAACATG
ATTTGTTTGTATAGTGATGAGTAGTCACTAATCTAGACTGCATGTCCTCT
GACACATTAGCTGATAGACACATCATCCATTCCCAGGTTAGGCCACACCA
ACTTAATTTTATGGATGACATCCTCTGAAGACTAAAAAAAAAAACTAATG
TGTGCGAGCAAAAAAAAGAAAAACCAGCCAAAAAAAATGCCTCAAACTGT
CGGACTGCAAAGCTGGTATTGCGAATTGAACCGCAGAACACAGTGTATCA
AACAAGCAACAAGTCTTTATTTGTAGGAGGTACATGTATTCTAAGTTGTC
TTGTTCATCTTGGCAGACTCAGCTGAAGTGATCGATGTTTGATATATTGA
CAAGAATGATCAAAGAAGTACACTATTAGAAGGTATTTGGCTCCAAGGAC
TGTGGATGATATATATGACTGATGAGAATACTAAGGGCAGTTTCAGCATA
CATGGCATTTTCTAGAACAGTCAATGTGCACGCAGATGTCATCCATAAAA
TTAAGATGGTGTGGCAATTTATATAACTTTATCATAAGATGTTAATGTTA
CCATAATGGAAAGAGTGAGAAGACTATCAGGTGTAAACTTATTTGGTTGT
AGATAGATTGATTTTTGCTTGCTTATCTATTTTCTCTTACTTGCATTGTT
ATTTATGCATAATTCATGTATGCCCATGGCATCACTGTAACGTCACTGAG
CTGGTCTATCCTGGCTAATGAAAACAGAAATAGAGCAATAAATGAATACA
TAACTCTGGTAAATAATTTCATCAGATTCAAGGTAGAATATAGGTTATAG
GAGACTCTTTTTACACAACCAGGACTGGTTATCTCCCCTGCTAACGTTTC
GGTGTCTCTCAGACACCTTCTTCAGAGCTTCTGACTGGAGTACTGCTTTT
CACCGCTATAAGTAGCCTATGTAGGTGGCACTTTTGCAGTGAAAACACTG
CACCAAGATGAGGGGGGATACAAACTTAGCCACGTTTGGGACAGTGTTCT
CACCGCAAAAGTGCCACCTACTTTGGCTACTTATAGCCGTGAGCAGCAGT
ACTCCAGTCAGAAGCTCTGAAGAAGGTGTCTGACAGACACTGAAACATTA
GCAGGTGAGATTACCCGGTTGTGTAAAAATAATCTCCTATAACCTGTGTT
TGTTCTACCGGTCTTCTCTCCCCAGTGTTCCCCTGCACGTTTGAGGGAGT
CCTGTATGAGTCAGGGTCTACCTGGGAAGTGGATGCTTGCACAGAATGCT
CCTGTAATGTAAGTTTGTCTCTTGGTTATTAAGAAAAAGAGTCGTAACCT
AATTATGTGCCAAACACACAAAATATCTAAAAGGCATGAGAGCCATATGT
CTACATAAAGCTTCCAATTGCATACTACGCATACGCCTTTTCGTACGCAC
ACCCGATTTGGTGGCAATTTCAGACCTAGCCAAAGGAGCTGAAATGTTCA
AGGGAAAACATCCCCTAAACGAACCCACCGTCTGTCCAGGCCGACATTTA
GTGGCTCGCCAGGAAGGACATGATCGCTTGAGCTCCTTATAACTTACCAT
ACATATATGAACCCCAACGTTGGTGTCTGTTAGCAATAGTAAGTGTGCAT
AATTGTAATTGGAAACTTTATGGTACATGTAATTCTGATACAAGTGTCAC
TATTAAATGTACACATCCATGCCAATGCAACTTTTTTGTTTTGTTAACCA
TGTTGCAGGATGGTAAGATCTTGTGCGGTGAGTGTCCTGCACTTCCCTGT
ACAGCCACGGAACAGCCAGAAGGGGACTGCTGTCCTCGGTGTAAAGGTAA
CTAGCATGCAATTCTTCATTCCTGCCTAAAGATTGAGGGTATTTTATGGT
CATCTTTGCAAATAACACTATTTGTCAATGATGCAATTTGAAAGGGTGTG
CTATAACTTGTGCTATAACTAGGGATGATTTAGATAATCATGTTGGGTTA
GAGATTGCCAGAATTACCAGTCTACCAGTATAGAGATCACAAGCAGAGTC
TCTGTTGACAGAAATTGTGATCTAGATGCTAAGACTGCGTTAGGGTGGTC
TCCTATTTATAAATCCTGAGTTTCAAGTTAATCCGTTGATCAAAAAGTGA
CATGAATCAAATATGTCATGATTAGTTGAAAAGTCCTGACTGTCTTTTAA
GCGAATGTCCATAGGCACAGACAAATCTACAGATCGGAATCTCTACATTT
AGAATCAATGATTTCACTGGCGGAGATCCTGTCAACAGAGATTGCAATCT
TTACCTGCAGAATCAGCAATTAGCCACTTTTAATCTAATTAGTGGTGAAG
AAAGCTGAACTTTCCACATCATTTTTCGATGCAATATCCACTGGAAGAAC
TGGTGGTCAAAACACCGATTGTTCAGCACCAAGGACAAAGCAAGCTAAAA
CGGAGGAAAAAACACCATCTTTTTAGTGGTATTTACTAAACTTGTGCATG
TTGTTTTTCCCAGCTTGTATTCAGGATGGGTTGGAGTACCAGCACCAGGA
CTTATGGTCTCCGACGTTCGACTCCTGTCAGATCTGCACATGTCTGGTAA
GGCACGCCTAATCCAACAGTGTTGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCGTTATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCA
TGTCAGTAGTGTAGGCTTCATGTCAGTAGTGTAGGCTTCATGTCAGTAGT
GCAGGCTTCATGTCAGTAGTATAGGCTTCATGTCAGTAGTGCAGGCTTCA
TGTTAGTAGTGTAGGCTTCATGTCATGTCAGTAGTGCAGGCTTAATGTCA
GTAGTGCAGACTTCAAGTCAGTAGTGAAGGCTTCATGTCAGTAGTGCAGG
CTTCCTGTCAGTATTGAAGGCTTCATGTCAGTAGTGCACAATAAATTTTA
TGACAGTTAACATCTACTGAGTAAAGAATTCTGCCATGTTTTAGGCAATT
TGTCAAATGATGCTAATTTAGCAAAACTATGGTTGATGTTTACATTCTAT
CTGCCTAGTAGGAGGGTGAGACCCA

Coding sequence (CDS) from alignment at Sc0000243:376171..380895+

>transcript:BL96452_cuf12 ID=transcript:BL96452_cuf12|Name=transcript:BL96452_cuf12|organism=Branchiostoma lanceolatum|type=CDS|length=480bp|location=Sequence derived from alignment at Sc0000243:376171..380895+ (Branchiostoma lanceolatum)
GAGTTTGAGTGCGAGAACACCATCGGCAGCTACAGGTGTGTTTGTCCAGC
CGGATTCAGACTCAACGAAGAAGACCAGTCCACCTGTCTCGACATAGACG
AGTGTGAGGAGCAGGTGTGTTCCCAGCAGTGCATGAACTCCTACGGCTCC
TACAAGTGCAACTGTGACCTTGGCTTTGTCCTGGATGTAGACGGCTTCAA
CTGTACGGAACTGAAGTTGTTCCCCTGCACGTTTGAGGGAGTCCTGTATG
AGTCAGGGTCTACCTGGGAAGTGGATGCTTGCACAGAATGCTCCTGTAAT
GATGGTAAGATCTTGTGCGGTGAGTGTCCTGCACTTCCCTGTACAGCCAC
GGAACAGCCAGAAGGGGACTGCTGTCCTCGGTGTAAAGCTTGTATTCAGG
ATGGGTTGGAGTACCAGCACCAGGACTTATGGTCTCCGACGTTCGACTCC
TGTCAGATCTGCACATGTCTGGGAGGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96452gene:BL96452Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96452_cuf12transcript:BL96452_cuf12-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96452_cuf12-E1BL96452_cuf12-E1-1564476830-406026Branchiostoma lanceolatumexon
BL96452_cuf12-E2BL96452_cuf12-E2-1564476830-406028Branchiostoma lanceolatumexon
BL96452_cuf12-E3BL96452_cuf12-E3-1564476830-406030Branchiostoma lanceolatumexon
BL96452_cuf12-E4BL96452_cuf12-E4-1564476830-406032Branchiostoma lanceolatumexon
BL96452_cuf12-E5BL96452_cuf12-E5-1564476830-406034Branchiostoma lanceolatumexon
BL96452_cuf12-E6BL96452_cuf12-E6-1564476830-406037Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000243genomeSc0000243:376171..380895 +
Properties
Property NameValue
Transcript idBL96452_cuf12
Biotypeprotein_coding