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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96462_cuf0 >transcript:BL96462_cuf0-protein ID=transcript:BL96462_cuf0-protein|Name=transcript:BL96462_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=672bp
GTVTGGQLYGDTTAFTCSAGYQLVGDQYRTCQANQTWSGLQPFCQKRCCT
LPTIGNGVITGSACFNETITVSCDAGYSIVGNSELTCTEDGVWDKSLPTC
KEICCDETLTIANGSVGQTGGGGFCFGNIVSFSCITGHQLVGGAAATCQE
DGTWSTVPVCERVCCGDVGLIHNGQSTTAESCYNDVVTFTCDPGFQLVSR
GDVVCGADGTWLGNMPYCEPSDLCSRDALSNPNDGYKVCYSAATGGEDKE
FCTMHCNPPKSYGLGRVVTYQCGDHTSWLWMTRVENLLKLVSVSSCQDPW
NPFAMIMIGGLTITSTTSPNLHQIRHYIRTELWRQGLCLPPCRISEISVD
AGVRTRRRRDISPLTVIDVTIQLYIEDNSQLSLQTNTLPADVDALIRKAA
LDIKTVMTSGIFVIPVNGENLTVADAGVVISDPFVGCPTGFLQQQSEPGC
FACPPGSFHNPMLKDCEPCPVGTYQTNSSQTSCEPCPEGTTTSAEGTSDP
SQCKEYSDCNCGPNACVPTSQGWMCQCPAGHIQEDDKCIAITECPAGSTV
FRDTCYLVSNTTATYRAAGDACRQHGGLLAMVKDKDTQDFIIENYSGKDM
WIGLDDTLKEGEFLWADGSRLDSFTYWTYGEPNDGGTASQDCVHLWSAAQ
QRWDDSSCTGRRLYICQISKQI Run BLAST on NCBI mRNA from alignment at Sc0000876:796..7420- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96462_cuf0 ID=transcript:BL96462_cuf0|Name=transcript:BL96462_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6625bp|location=Sequence derived from alignment at Sc0000876:796..7420- (Branchiostoma lanceolatum)
GGCACCGTTACAGGTGGCCAGCTGTACGGAGATACCACCGCCTTCACCTG
CTCAGCTGGTTATCAGCTGGTCGGGGACCAGTACCGGACCTGCCAGGCTA
ACCAGACGTGGAGCGGCCTTCAGCCCTTCTGTCAAAGTAAGTCTTCGGAA
ATCCTAAGAGATCTGTTTGCTCAATAACAAGCGAACGCTTTTGATTTATC
ATGTTCGTAACTCATTAGATGTTAAGACAAACTTGTACCAACACCGTATG
TATTTTCTGAACGAACGAACAAAGCATGGCAATATCATTATAATCATGAT
TATGTGTGGCGTAAAACATGTTGTCATTGTTTCAATGCTATAGCTAAAGT
AGAAATGTTCATACAGTATTGAATATGCTGTTTGCTCATGGCGTATGTAA
GTATCATGCTGTTACCACGTTTTCCCCAAAGAGAGATGTTGCACCCTGCC
TACTATTGGAAACGGCGTGATTACCGGAAGTGCGTGCTTCAATGAGACCA
TCACCGTCAGCTGCGATGCTGGGTACTCCATAGTTGGGAACAGCGAGCTG
ACGTGTACAGAGGATGGGGTTTGGGACAAATCTCTTCCAACTTGCAAGGG
TAGGGTTCTTACTCTCAAGAAGTTATATCACATAACATGTAATACACCTT
CTCATCGAATATTATCCCAATGCACAGCCCTTTTCCTGGTGGTATATGAA
GCAAAATGAGTTATAGTCACCAATATATCTGTCATCCTAGCTACCAATTA
GGTTATTTTAAGTTTGCTGCAATTTTTGCAATTTTAACCTGACTGGGTTT
ATTCTATGTATGTCCGTATTTTCTTTTAGAGATATAGACTAGTTGTTTAG
CCCATCCAGTGATGAGAAGTCGAAGGCATCTTACCACATGGTAGGTAGAT
ACCCCGGCAGTTGCAACCGTACCCTTCTTTTACCTTTACAGAGATCTGCT
GTGATGAGACACTCACCATTGCCAACGGCAGTGTTGGTCAGACAGGAGGT
GGAGGCTTTTGCTTTGGAAACATCGTGAGCTTCTCTTGCATTACCGGTCA
TCAACTGGTAGGAGGCGCCGCTGCAACATGTCAAGAGGACGGTACATGGT
CAACTGTGCCAGTCTGTGAGAGTAAGTAGAGGATAATGGATCGGAGCCAT
CGTCTCCATGATAGCAGGCCTTGGATTCCAATTGTTCTGTTATGGTACTG
TAATATCTCTGGTTTCAACTTTGATATCTTATTTCAGTTGTGCTTACATT
ATGGTTGGTGTCACTTTTTTTATCATCATCGTACAACTTCTGTTCCAACC
AGGGGTTTGTTGCGGTGATGTTGGTCTGATACATAACGGCCAGTCCACTA
CCGCGGAGTCGTGCTACAACGACGTCGTGACCTTCACCTGTGACCCCGGG
TTCCAGCTGGTCTCCCGAGGTGACGTCGTCTGTGGTGCAGACGGGACATG
GCTTGGAAACATGCCCTACTGTGAACGTAAGTACAGTAGTCATTAGTTAA
ACGAAATGAGATGAGTCCATTCCCGTAGCCAGGGGGGGTTCGGGGGGTTC
GGAAGAACCCCCCCCCCCCACAGGCTTGAAGGTCCACTTGAAGGTCCACT
TTCACAGGCTTGAAGGTCCACTTTTTAATAATCAAGATTTTTTTTTCAAG
GCGGACTTATTTGCATCACCAGCAAGGCCACAGAGGCTAGAATCCTAAAA
AAAATGCTCACTTTGTCTCTGATTTTTCCTCTGAAACCCTTTCAAAAACA
CAGGAAATGGCCTTTCAGAAGGTTCAATTTTTGAAATTTTACACGCTCGA
AGGTCCACTTTTTAACGTCCAAGGTTGTTTTTTCAAGGTGGACTTATTTG
TATCACCAAGCGGGGCTGGAATCCTAGAAAAACTGCTCACTTTGTCTCTG
ATTTCTTTCTTTGAAATCCTCTCAAAAACACAGGAAATGCCATATCAGAA
GGTTTAATTTTTAAAATTTAACCCCCCGGACCCCCCTAGGAAGCTCGCGC
CTGCGGCGCTCGCTGGTCCCTCAAACATTAAAAAGACCCCCCCCCCCTCC
ATCAAAATCCTGACTACGGGCATGATGACGGTCATTCTTGTGGTACTAAC
ATTTATGTAACCTAGAGAACAAACATACACAGGCAACATACCGTGAACTA
GCAGCTTTTAACACTGTAATCTGGAGATGATCCCCTTTGTCTGGTTTTCC
AGCCAGTGACCTGTGCAGTCGAGATGCTCTGTCTAACCCCAATGACGGCT
ACAAGGTCTGTTACTCGGCAGCGACGGGCGGAGAGGATAAAGAATTCTGC
ACCATGCACTGCAATCCACCTAAGGTAGGAGTGCACAGACATGATCATCT
GTCAAGTAGATACCCGTTTATAGATAGATGCGTCGCGTGATTTTCTTTTA
CATCAATACAAGAATTGGCTATCTGGAGAGATCTATGCAATGAACAATGC
ATTGTTATTTTGTTGGCCTGTCTGCACTGTTCTGTCTGTAATGTGACACG
AGAAAGTAAGATTTTTCTCCACATATGGATAGCAATCATGAAGTGGACGT
TTCAATCATGTAAATACCATTTGAATGAGGAAAGAATTGTGTTTTCTTAT
GTTCGCAATGACCATTATCTTCTAAAGTCGTACGGACTTGGCCGTGTGGT
GACGTACCAGTGTGGAGACCACACCAGCTGGCTGTGGATGACGCGAGTAG
AAAATCTTCTCAAGCTGGTCTCAGTCTCATCATGTCAAGGTGATCGACAG
CTTAGACATTACACTATGTCGTATTTTCCCTGTCCATCATTACTTTACAG
ATTCATCGTATACATATATATATGTATATATATATATATATATATAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAAAGA
GAGAGAGAGAAATATAGATATAGATATAAATATAGATAAGTGGGCCTCAA
GAGGGAAGGCATTATACAAAATATTTTATTAGCTATCAGCTTATGATGGA
GCATCATGATTCTAATTAAGAGCATGTATGCAACGCCACACTACTCTTCA
TGGGGCAACTAAAGGACATGATTTTACAGATGAGCATACAACTACAATAA
GTTATGGGACTCATTTACATTCTGCGCATAATGTCTTCTTCTTTCAGACC
CATGGAACCCGTTCGCCATGATCATGATAGGAGGTCTGACCATCACCAGC
ACAACCTCACCCAACCTGCACCAGATCAGACACTACATCAGGACCGAACT
GTGGAGACAGGGGCTGTGTCTACCGCCATGTAGGGTAGGGATCTGTCCAC
CAGTAGTGTGCATTGTAGCTAATCGAATTAGGTAAGTTAGATTGTGCAAT
AATACAACATCTCTGGCATTCAACATTGTCAAAATTGTGGCTGTTTTGCT
GCCAGTGTATCATATTAGGAATTTTGGTATCAGGCCTTTGATGTTTCGTG
TTCATGTACCATTTCAAAATCATACACATTTTCAAATAACAATAACAAAG
ACTTTTGGTCATAGATCAGCGAGATCTCTGTTGATGCGGGAGTGAGAACC
AGGAGGAGAAGAGACATCTCCCCCCTCACTGTGATTGACGTCACCATACA
ACTCTACATAGAGGACAACAGTCAGCTGTCCCTACAGACAAACACCCTCC
CTGCAGATGTGGACGCACTTATCAGGTTTGTTGGAAAATATCGTGTAAGT
AACGTGTAAGTGTAACGTAACGTGACCAATCACCTTCCAATTTCTTCAAA
ACGTCATTTATTTTAAAACGCGCGGACAGAGCCAAATGTTTAACCCTTGG
GAAGAAATATCAGCTCTATAATAATGTAGTGCAGCGAATTTCACCGACAT
GATAAAGGCATGACCATGATGTTTTGACGTGCAAAACGTACCATTGGTGC
GGGGGTCGCTAGGTTGTATCGAACCTTCCTAAAGCTAGTAAGAGTTTCAA
ACATCGAATCGCCATGGATAGTTTGAATATCAAAGAAAGGTTTAACGTCA
GCTACTTGTAAAACATACTAGCTATCGTGTAAGTTAGAAAAACATGATGA
AGTACGCGGTGTCGAATTACATATGAATTACGTCATGCATGACGCTTCCA
TGCAACTTGCTGTCACTGGTTCAGAGTTTATTATGATAACCTATTTTATT
GTATTCTACAAGGGAGAGTCATGACTAAGGACCATCCTTATGACGTTGTT
TATTACTGCTCATAAGAACTGGCTTTGGCGAAATACACCTCGACATGTGG
ACATGACCCAAAGTGGACGATAACTGGTAGCGCACGATAACTGGTAGCGC
GACGTTACATGACTTGAAGTGCTTTGCATATCAATGTACATTGAACTCGA
CTTAAAGGCTGTAGACGGTCGTATTGGTCAAGGAACAAGAGAAATCTGAT
ATAGACTTATTGCTGCATCCAAGTTGACATTATTATTGTTCATACGTAGG
GATATTAAGAAATAATCACTTGTTGTGAAGAAGGTGGGTATCTGTAACGT
TACGTATTTATTTCTCTCTACAGGAAAGCTGCCCTTGATATCAAAACAGT
CATGACATCGGGTATATTTGTAATTCCCGTCAACGGTGAGAACCTCACAG
TTGCGGACGCTGGAGTTGTCATCTCTGATCCCTTCGTAGGATGTCCAACC
GGGTTCCTTCAACAACAGTCTGAGCCTGGCTGTTGTGAGTTCATTAAAAC
ATCGCTTGCAAATTGTATTTCTTTTGGTGCCTTTTGTTGCATTTCTTTTT
GTTTAGCATAAGACTTCCATATTCAATCTTGCTAGTCATAGACGCAATAA
TGGAACATCTGATCCTTGGATATGCTATCCAACTGTTCTTTCTTTTCTTC
AGCTGTATCCGTTTGCTCGTGCATTCTTTTCAAGCCTTTTAAGAACCTGT
TCATCAGCTGCCCTGTCTCTCCCCTAGTTGCCTGTCCTCCCGGGTCCTTC
CACAACCCCATGCTAAAAGACTGTGAGCCCTGTCCAGTGGGGACGTACCA
GACCAACAGTTCCCAGACCTCCTGTGAACCCTGTCCAGAAGGAACTACTA
CATCAGCAGAGGGAACAAGTGACCCCAGCCAGTGTAAAGGTAGGTTTGTG
AAGTCAAGCAACAAGATTTATAATACAAGGCGGTCCGCTGCTACCTATCC
AAACAGTGATCTAAATTGCCACTGAAATGACAAGCATTTACAATTTCATT
TTGTTATCAGCACATTGGGATACCATTGTAACATGCTCGTTGGTCATAAA
AACATTCATTGTTTATCTAGAATATTCAGACTGCAACTGTGGTCCGAACG
CCTGTGTGCCGACATCCCAGGGGTGGATGTGTCAATGTCCGGCAGGTCAC
ATCCAGGAAGACGACAAATGCATCGGTAAGATTGACAAATATTTTGGCTT
CCTTGCGTGAATGATATCCTCTGTGATAATATTCATGAACGTGGCTTTTA
AGTTGAAGACATGAATGTAGGTTGGCGATAGAAACTATGAAAGCTAACCA
CGATTTTCTATAAATTTGAGTAGAAAGTATATTTAGATGTTTTGGTCAGC
CATTACAGAGTGCCCCGCTGGTTCGACGGTGTTCCGAGACACGTGCTACC
TGGTGTCCAACACCACGGCCACCTACAGGGCTGCTGGAGATGCTTGCAGA
CAGCATGGAGGACTGCTCGCTATGGTCAAGGACAAGGACACTCAGGTGAA
CCACACTACTTTTTCAGCATTCTGTTATCTTGCGTACCCATATATCAGTG
TATATATTGTGGCAAGGAGTGCATTAGACCTTAGACTCTTCATTAGCAAA
AGCTAGCATTTGCTGGTACGACACTATTTTCAACGTCCATTTGTGCAAGG
AATGCACCGTATTAAGAGCCATTCCTCAAATGGGACAACCCTGTTCTTTT
TAGGACTTCATCATTGAGAACTACAGTGGAAAGGACATGTGGATTGGACT
AGATGACACCTTGAAGGAGGGGGAGTTCCTTTGGGCAGATGGATCCAGAC
TGGATAGCTTCACCTACTGGACATACGGTCAGTACAGGAGCATTCACTAC
CCATTCTCTAAGGAAATAGATTGTAATAGTAACAGAGTCAACAGACCCTT
CGTGATCCATCTTAGATCAGTCTCACCCACCCACATCGGTGCCGTACCCT
TCATCCAAACAGTTGCCATACGTACTCGAATTAAATAGATCTAGATGTAC
TCTTGTCTTCCAGGGGAGCCGAACGACGGAGGCACAGCATCCCAGGACTG
CGTGCACCTCTGGTCGGCGGCACAGCAGCGCTGGGATGACTCCTCGTGCA
CCGGCAGAAGACTTTACATCTGCCAGATCAGCAAACAGATCTAGAAGGCT
TACTTCTGGCATGGCAAAGCGTGTTTGCGCAATACAACTTTTTGTTCGGC
TTTGTGTTAGAATGTATGATCATGTATTGATACCTAGCGTAATTTTACTC
GAGCCTGTAGTGTTATTCTAAGCCGAGGAACATATGGTGTCACCAGCGTT
AGTTTGTCCAATCTTGGTTTGTTAACTCAAGATTTTATTAAGAGCCTCCT
AGCCTTGGTTAACTGTACAACTACTAGTGACCAACGTTGTGTCTCTGTGT
TACTGTGTTAGTAGGTTAGATTTGG Coding sequence (CDS) from alignment at Sc0000876:796..7420- >transcript:BL96462_cuf0 ID=transcript:BL96462_cuf0|Name=transcript:BL96462_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2019bp|location=Sequence derived from alignment at Sc0000876:796..7420- (Branchiostoma lanceolatum)
GGCACCGTTACAGGTGGCCAGCTGTACGGAGATACCACCGCCTTCACCTG
CTCAGCTGGTTATCAGCTGGTCGGGGACCAGTACCGGACCTGCCAGGCTA
ACCAGACGTGGAGCGGCCTTCAGCCCTTCTGTCAAAAGAGATGTTGCACC
CTGCCTACTATTGGAAACGGCGTGATTACCGGAAGTGCGTGCTTCAATGA
GACCATCACCGTCAGCTGCGATGCTGGGTACTCCATAGTTGGGAACAGCG
AGCTGACGTGTACAGAGGATGGGGTTTGGGACAAATCTCTTCCAACTTGC
AAGGAGATCTGCTGTGATGAGACACTCACCATTGCCAACGGCAGTGTTGG
TCAGACAGGAGGTGGAGGCTTTTGCTTTGGAAACATCGTGAGCTTCTCTT
GCATTACCGGTCATCAACTGGTAGGAGGCGCCGCTGCAACATGTCAAGAG
GACGGTACATGGTCAACTGTGCCAGTCTGTGAGAGGGTTTGTTGCGGTGA
TGTTGGTCTGATACATAACGGCCAGTCCACTACCGCGGAGTCGTGCTACA
ACGACGTCGTGACCTTCACCTGTGACCCCGGGTTCCAGCTGGTCTCCCGA
GGTGACGTCGTCTGTGGTGCAGACGGGACATGGCTTGGAAACATGCCCTA
CTGTGAACCCAGTGACCTGTGCAGTCGAGATGCTCTGTCTAACCCCAATG
ACGGCTACAAGGTCTGTTACTCGGCAGCGACGGGCGGAGAGGATAAAGAA
TTCTGCACCATGCACTGCAATCCACCTAAGTCGTACGGACTTGGCCGTGT
GGTGACGTACCAGTGTGGAGACCACACCAGCTGGCTGTGGATGACGCGAG
TAGAAAATCTTCTCAAGCTGGTCTCAGTCTCATCATGTCAAGACCCATGG
AACCCGTTCGCCATGATCATGATAGGAGGTCTGACCATCACCAGCACAAC
CTCACCCAACCTGCACCAGATCAGACACTACATCAGGACCGAACTGTGGA
GACAGGGGCTGTGTCTACCGCCATGTAGGATCAGCGAGATCTCTGTTGAT
GCGGGAGTGAGAACCAGGAGGAGAAGAGACATCTCCCCCCTCACTGTGAT
TGACGTCACCATACAACTCTACATAGAGGACAACAGTCAGCTGTCCCTAC
AGACAAACACCCTCCCTGCAGATGTGGACGCACTTATCAGGAAAGCTGCC
CTTGATATCAAAACAGTCATGACATCGGGTATATTTGTAATTCCCGTCAA
CGGTGAGAACCTCACAGTTGCGGACGCTGGAGTTGTCATCTCTGATCCCT
TCGTAGGATGTCCAACCGGGTTCCTTCAACAACAGTCTGAGCCTGGCTGT
TTTGCCTGTCCTCCCGGGTCCTTCCACAACCCCATGCTAAAAGACTGTGA
GCCCTGTCCAGTGGGGACGTACCAGACCAACAGTTCCCAGACCTCCTGTG
AACCCTGTCCAGAAGGAACTACTACATCAGCAGAGGGAACAAGTGACCCC
AGCCAGTGTAAAGAATATTCAGACTGCAACTGTGGTCCGAACGCCTGTGT
GCCGACATCCCAGGGGTGGATGTGTCAATGTCCGGCAGGTCACATCCAGG
AAGACGACAAATGCATCGCCATTACAGAGTGCCCCGCTGGTTCGACGGTG
TTCCGAGACACGTGCTACCTGGTGTCCAACACCACGGCCACCTACAGGGC
TGCTGGAGATGCTTGCAGACAGCATGGAGGACTGCTCGCTATGGTCAAGG
ACAAGGACACTCAGGACTTCATCATTGAGAACTACAGTGGAAAGGACATG
TGGATTGGACTAGATGACACCTTGAAGGAGGGGGAGTTCCTTTGGGCAGA
TGGATCCAGACTGGATAGCTTCACCTACTGGACATACGGGGAGCCGAACG
ACGGAGGCACAGCATCCCAGGACTGCGTGCACCTCTGGTCGGCGGCACAG
CAGCGCTGGGATGACTCCTCGTGCACCGGCAGAAGACTTTACATCTGCCA
GATCAGCAAACAGATCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000876 | genome | Sc0000876:796..7420 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96462_cuf0 |
| Biotype | protein_coding |
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