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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96474_cuf5 >transcript:BL96474_cuf5-protein ID=transcript:BL96474_cuf5-protein|Name=transcript:BL96474_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=192bp
MATSEMSNVTCENENNYTMLVDDRLRNFLKMNGFDDYINLMTENHFTYEN
LQSCKEVDLINFGIPLAKAHAILTALRSEGTSENARSNELVPRKYICPIS
NSVMKDPVRANDGCIYDRSAITAWYERNGCTPNMKVHGLELQPAEDLREE
INNFRKRRQKRANNRHPSHSVRPNSAQSDSSRSATPMTDVDC Run BLAST on NCBI mRNA from alignment at Sc0000096:963636..967173+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96474_cuf5 ID=transcript:BL96474_cuf5|Name=transcript:BL96474_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3538bp|location=Sequence derived from alignment at Sc0000096:963636..967173+ (Branchiostoma lanceolatum)
ATTACATCCCGCTGCAGAAAATACCAGGTACCTAAAACATAACTATGGGT
TGCTTTGATGACGTTGACTCAAAAATCGCATACATGTACGTACATTTGTT
GTTCGAAAATTAGAAAGCTTGATATGATTTGTATTATTTTGTTTGAATAA
AACCAATGTGTGATTTTCTATGACCTTGCAATATGTTAGGATCCAACCTG
AATCAATCATATTTCCATCCTAACTGGCGTTACATGAAACAGCCATAGTC
CTTATAATCCACCTATGCTTTAGAATTAACTTATAAGCTGTACGTACTCC
TATATGCAGGTTTATCTGGAGGCTGTAGTAGGGACTGGAGACCAAGGTGA
CATTGCTGTGGACGATGTATCTTTCGCGACATATTGTGCTCTACATACAG
AAGGTAATTCTCTCAGATGACAAGCTATTGTTATCCACATAACCAATAAC
ATTTCAATCATTAAACTCTTGACGCTTTAAATCCGAAACAAAAACAATAT
TATTTTATTTTCTGTGTGCTAATAACTCCTAGGTGACCAAGCTGGATTGT
CGTCCACAACAGTAATAATCATTGCTGTGGCCAGCGTGACAGTGGTTCTT
GTAGGCATCGGTGTTGCTACCTTCATTGTCTATTGCAGACGTAAGAAGAT
AAAGAAAGAAAGGTAAGCAATACTAACAAATGTTTGGTGCATTGTGGTCT
TGTGTTGAAAATCATAGCACTTCTCAAAATCCATTTCTTATATTCTTAAG
TATATCGAAGAATCATCTATTTACTGTCGAAGGGCAGCTCCTCCTAAAGG
GTAAAGTTCTATATCGTTGGTAAGTTATCAAATGCCAATTTGCGTTGTGA
CCTAAAGCAACTCAACTAGTTATATCATGTCCCTGTCCAGATACCGCAAC
AACAACCAGAACAACAGTCACCAACTCAGACATTTACCAGCACCACCACG
ACGCGAAGCTGATAACGTCAGAACCTACGAAGACTTACGAAGGAGCAATA
CAAGTAAGATGCATCCCATGTTACCATCAGGCTTAGTAATGAAACACACA
TTAGATACCAACAATGGACCGGAACGTGATTGAAAAAAGGTCACACAAAT
TCTGTAAATCAACATTTCTTACTTTAGGTTAACCTGGAATCCAGAAGCAG
TCAACATATAATATTGATATATCATTCATTCATTGCAATTATATATCATA
TTTTACCAGACAACTATGAGTCCTTGGCTGGCGCAAGGAGGCGAGTTGAA
GATCGGCCTGTCACACTAGGGGAAAGGAAGGGACAGGTAAATGGATCAAT
TTTAATTAATTTAAAACGTTTGCAAATAACATTAAACAAACGAATCTAAA
AGAGACAGGTGGATCGTTTGGCAACAAATGGATACCGGTGGAGACTGTTG
TAGCAATTTTTTTGTGTCGCACTTTACAGAAAATATAAAGTGGTAAAGAT
ATTTTGTTTTTACACTTATAGGTTGAACAACTTCAACCTGACGGAGCCTA
CTCCATTTCTGCATACGCGTCATCTAAAGACCTGTTCTCAGTAGACAGAA
GTAGCCAGGCGTCATTGGTGAAGAACACTGTCGGCATGGCAACGTCTGAG
ATGTCCAACGTGACGTGCGAGAACGAAAATAACTACACGATGCTAGTCGG
TAAGTAATGATTGGGCCAAATTAGCCCAAAATCACTTACAAATCCAGAGG
TTACTCAAAAGAAATCCGTCTTATCCTTTCTTGCTCATTAAAGAAACAAT
GTATTCGATATGTGCGAATTGTCATTAGGAGTCGCAACATACTTTAGCAC
ATTCTTTCTTTTAGACTTGATACTACACGTACGAGAAAAATATAGGATTC
AAATATCATGTATAGCGGCTTAAATTGCTTTGTATATATTATATGTCAAC
AATCAAAAATGATGATAAATCTATCACTTGCTTCCAAACCTAGACTGTCA
TGGTTTTCTGTTTTTACCATACCATAAGTATAATATTCTCTGAAATGTTT
GCATCTTATTGCTTTTAGATGACCGACTTCGGAACTTTCTGAAGATGAAC
GGCTTTGATGACTACATAAACCTCATGACGGAAAATCACTTCACGTATGA
AAACCTTCAGTCCTGTAAAGAGGTAGACCTGATTAACTTTGGAATACCTT
TAGCTAAAGCACATGCCATTCTGACAGCCCTCCGTAGCGAGGGGACCTCC
GAGAATGCTAGGTCCAATGAACTTGTTCCTAGAAAGTATATCTGCCCAAT
AAGCAACAGTGTGATGAAGGACCCTGTGCGTGCAAACGATGGTTGTATCT
ATGACAGGTCAGCCATAACGGCTTGGTATGAACGGAACGGCTGTACACCA
AACATGAAAGTTCACGGACTTGAACTTCAGCCAGCAGAAGATCTACGTGA
GGAGATCAACAACTTTCGCAAAAGGCGACAGAAAAGGGCAAACAACAGGC
ACCCTAGTCACAGTGTAAGGCCAAACTCTGCTCAGTCAGACTCATCGAGG
TCTGCCACTCCCATGACAGATGTGGACTGCTAGATTTATAGAAAACTTTA
GAAATGTCATGTTTTAGCTGCTCCTAGCATCTTCCGGTAGTATTCTTTTT
AAAGTCACTATTTCAAAGACTACTAAGATAGTTACAAGGAGGCATGACAT
CAGTGGCTTTTACAAAAGACAGCACAGTAGCAGCTTATAAGATTAACACA
ATGTTTACAGTACAAAGTCGTCCTTAGTTTCATTCAAATGAATATAGGAC
GACACGGCAAAAATCACGTGTCTCGAGTGAGCTTGAAAACAGTGATCCGT
TAGAATTATGGATACACAGTATGCAAAGATCATTCTGATGTAAATGCATT
AACATCTTGCTGGTATTTGTGGTATTCAAAAGCAATATGATGATCTTGAT
ATTTTGATACCTTTTTCCTTCTTGTATATGATTTCAATTAAATGATCTTT
AACCGTCCTAAGAGAGACAACAATGTCCCTTATCAGAATGCCAAAGCCCT
AAAAGGCTATTGACATGTGAGTAAAACACACGCTATAAAGAATTAATTGT
TTCTTTCACCGCCGTTGTTTATCTCAGATAGCAATTTTCTATTTGAGCTA
ACGTGTGGTGGTGTGACTTAGATATGACTGTGTATGAGTGTTATTATATT
TAGCCAGCTGGGACTGTTGACTGTAAGAAGATAAGGGGACTCTGATAAGC
ACACATGCTGAAAATTCAAAACATGCCATTGCTACAGTTAAAATATTGTT
TGCCTTTTTTCAGAGATTGTAGATAGTATGTAAGCATGACTAAGAAACAA
CTTTTCGTCTGCTATACTGCATGCAAGATGAACAGCACTAATGTTGTTTA
GTCCAATTTTATCTAAACATGGCAGAACACGTTGTTGATGAAGTGGGATA
CGTTTCCAGTTCTACCCACTTAATTTTTCTTAATGAAATGCTGTCATGTT
TGTCTGGTTAGATAGGGCAAGTCAATTGAATTCTGGTCTTTGTTCTGACA
TGGACGTTCATTCGTACGAATTAACACTACATAAAATC Coding sequence (CDS) from alignment at Sc0000096:963636..967173+ >transcript:BL96474_cuf5 ID=transcript:BL96474_cuf5|Name=transcript:BL96474_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=579bp|location=Sequence derived from alignment at Sc0000096:963636..967173+ (Branchiostoma lanceolatum)
ATGGCAACGTCTGAGATGTCCAACGTGACGTGCGAGAACGAAAATAACTA
CACGATGCTAGTCGATGACCGACTTCGGAACTTTCTGAAGATGAACGGCT
TTGATGACTACATAAACCTCATGACGGAAAATCACTTCACGTATGAAAAC
CTTCAGTCCTGTAAAGAGGTAGACCTGATTAACTTTGGAATACCTTTAGC
TAAAGCACATGCCATTCTGACAGCCCTCCGTAGCGAGGGGACCTCCGAGA
ATGCTAGGTCCAATGAACTTGTTCCTAGAAAGTATATCTGCCCAATAAGC
AACAGTGTGATGAAGGACCCTGTGCGTGCAAACGATGGTTGTATCTATGA
CAGGTCAGCCATAACGGCTTGGTATGAACGGAACGGCTGTACACCAAACA
TGAAAGTTCACGGACTTGAACTTCAGCCAGCAGAAGATCTACGTGAGGAG
ATCAACAACTTTCGCAAAAGGCGACAGAAAAGGGCAAACAACAGGCACCC
TAGTCACAGTGTAAGGCCAAACTCTGCTCAGTCAGACTCATCGAGGTCTG
CCACTCCCATGACAGATGTGGACTGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000096 | genome | Sc0000096:963636..967173 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96474_cuf5 |
| Biotype | protein_coding |
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