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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96479_cuf7 >transcript:BL96479_cuf7-protein ID=transcript:BL96479_cuf7-protein|Name=transcript:BL96479_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=224bp
IITLHWNVTDDESGVSFCEVAIGLSPGSGEVHQFTQQPSLYSATFDLSGH
LTNGDTVYSTVRCHNYAGMTSHVTSDGVTIVTQPPNSEHAIVETVSEPQS
YYPSRAFHQSSTDAIHMSWEGFFDDTGIRNYQCRVTGPGLTEFPWIDVGL
TGQTHATLSGLHLHGYNRYDVHVRAVNHGGMVSDDVTSDIYVEMERPLVM
GKQVPELVAPAGSDGVRLDRRFSQ Run BLAST on NCBI mRNA from alignment at xpSc0039678:173949..177843+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96479_cuf7 ID=transcript:BL96479_cuf7|Name=transcript:BL96479_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3895bp|location=Sequence derived from alignment at xpSc0039678:173949..177843+ (Branchiostoma lanceolatum)
AGATCATCACGCTTCACTGGAACGTCACTGATGACGAGAGTGGGGTTTCT
TTCTGTGAAGTCGCGATAGGTAAGACTGAGTTAGCAGTAAATAGATATAA
AGCAGTTCTGTCTTACTTATTCCGTGCATTAATTATCTATTCTGATTAAG
GTTTTTTAATAATGATTAACAGGAGTTCCTGTCCTTTTTGTTTGTTATTG
ATTATGCCGCCTGTATTCATCATCATATATGTTATGTTTATTATCTCCAT
GAAAAATGGGGATATAGTTTTGGGTGTCAGTGTGTGTGGTGTAGGTTTGG
GTCCTCTAGCAGCTTGCTCTGAAACTGCAGGGGTGTTATTCTAAAAAAAA
AAATGAACAAAGGAACGATGGACTTCTATGATATTTAGTATGCAGGTAGC
TTCGAAAGATATATATGTTATGATTATGCAAATTATGTTACCTAAAGATT
TACCTTTAACTATGGTTTCTACCCCAAATAAAGGGACAACAAACGATACC
GAAAATTAAATCGGAAAATACAAACAAGCAGGTTTTCGCCGAAATCAATA
AGATTTTCGATTCCGTCCTACTTTTCTTGGCGGGATCGTAGCCCATCGGC
CTGAGGTTATCGGCCAACATACAAAATCGTAAAAGAAACTCCGGTCCGAA
ACCACAACATATGTAGTTTGGAACATTATCCGGTACCGAGTATGCAAATA
AATTTCTAATTTGCATAATCAATGCAAAAGCGCCATAATCTATCTAAGTG
GTAAATGATACGTAGGACTGTCAATATTGCGACCTGTGTAAGTTTAGTTA
AAGGTGTTCATGATCAAGCATAGATTATGTGAATGTGGAAATCATTTGCG
TAAACAGAATAGTTCACGGAGATATGAGGCCTCCGAACTCGTATTTGATA
ATTGTTATCCTTCTGTTATTTTAGTAATAGATATCACATGTGTTTAAGTT
GGAATCTAAGTTTTTGTTCCATATTCTATGAATTTTCCATCGTAACCTTT
ATAATTTTACATTGTATCTCTGGTTAACGTCTGTATCGTTTTTCCTCTAT
ATGTATCATTTTTGTGGAAAATTTTAAGAAAAACTTCTATTGTAATTTTC
TTTAATCTTCTGACTAATCTCCTTAATAACGAGGTTTGAGTCCAGGATCA
GGAGAGGTCCACCAGTTTACCCAGCAGCCATCACTCTACAGCGCCACCTT
TGACCTTTCCGGCCACCTGACAAACGGTGATACTGTCTACTCCACTGTCC
GCTGTCATAACTACGCAGGGATGACGTCACACGTGACGTCAGACGGCGTC
ACTATTGTCACTCAGCCGCCAAACAGGTAGGTTGATCAGAAATTATGATT
TTATGCAAAATTGAAAACACTGTTAGCTGGGTATATTTACTAAGTGTTAC
GGTAGTGATTTTTTCCCTTAAACTATTTATCAAACAGCAAAACTTGAGTA
AATCTTAGACCGAAGAGTAAATAAGAGTTGTTGAAGAAAAATTAGTCATT
AATAATTGACTTGTTTGTTCCCTCTGTACCAGTGAGCACGCTATTGTAGA
GACCGTGAGTGAGCCTCAGTCCTACTACCCAAGTCGCGCCTTCCATCAGT
CTAGTACTGACGCCATCCACATGTCATGGGAAGGCTTCTTTGATGATACC
GGCATCCGGAATTATCAGGTAACGAAAGACCTGTCTAGTTTCCGATGAGT
AGCTTCATTCCAAACTTTCGACCATTTACTTGATGAGATCTTTATTTACA
AGCAATGTTTTTACCATGGCCATTGACCAAGCAAAATAAGCTCAACCATC
TGTCACGCTTTATTCCATAAATGTTCTAAGACTATGTATCTTGCTTTACC
TTACAGTGCCGTGTGACTGGTCCTGGTTTGACTGAGTTCCCTTGGATCGA
TGTTGGTCTGACCGGACAGACTCACGCAACCCTCTCAGGGCTCCACCTGC
ACGGCTACAACAGGTATGACGTACACGTCAGAGCTGTCAATCATGGGGGC
ATGGTCAGTGATGACGTCACCTCAGACATATATGTGGAGATGGAGCGACC
GCTAGTGATGGGTAAGTTCTGTCATGGTTTTATGACGTTATAAGTTTGCG
GGTAACTTTAAAATACACCATACTAATCCGACATGCAATCTTAGAAGTAG
TATCATGTATGCGTAATACTCGTGGAGTTGAAGAGAATCTAACTAATAGA
TTAATACAATCAGGATATGAATGACATAACTGCATCATACGTTCGATCTT
GTCCACAGGAAACAGGTTCCGGAGCTCGTGGCCCCAGCAGGGAGTGATGG
TGTTCGACTGGACAGACGTTTTTCTCAGTAACTCCTCACTCATGTACGAG
GTTTCCATAGGAACCAAGGCAGCTGGAACTGACGTCATGCAATGGAGAGA
AACAGAGAATACGGAGATGCGCCTGGACGATGTAGACAGCAACAAAGAGC
ATCATGTCGTCATCACTGCTGTCAATCAAGCCGGGCTGTACACGACTGTG
AGCTTTATGCTGTCCTATCCGGGCAGTGGGTAAAATAAATTTTACAATCA
AGTTAAAGTTAATTGCACCAAAATTGTAACTGGTAATTTTAACTGGCCAA
TTGTACGACACAGCATTGTGCAAGACTGATGGCTAGTTACAATAATCTTG
TAACATCTACGCTTAGATTCTAAGCTATACAACGTTGATAGAGGACACAA
TGGTAAGACATGCAGCTACATTTGTGGATTCTCTCAAGTCGTTATTCCAC
GGTTTCCTTTTTCCATGGGTGTATATACAAGTATGTATTAGCCTAAATAG
ACAGAAATATGTCGGGACATGATATAAGTACGCCTCTCTAAGTGTCCCGG
GTGATGTTACAATAGTCTCACACTTGATTATCTGAATTGATTTCATTCTT
TCGGTATAAGCTGGACAAGTCATAGAAAGATGGCACTCATCTTCAGCACT
TGTATTTGCATGTAGGACACAATATCTTACTGGCAGGTGTATCATTGTGT
CAACCCTTTCCACTCTCTAGACAGTTTGCACAGATTTTTGCTGTTATAGG
TATAAATGATTTGTTGTGGACGGACACGGGATATAGTACAAATTTATACC
TTCAGGTCAGTCGCTATCGTAGAGTGGAACTCTTTATCGTCAAGTACTGT
AGAGGCATCATCATTAGATAGCTTTAAACAACGTACGCAGTTAGATATGC
AAAAGTTAGATGTGACAGGTGTAATATAACCAGCTGATGTCGTGCCGCGT
GCCTGTGAAGCTGGCGTGTTACGCCGAATGTAGGTTATACCGGCCAATAC
ATAGATACAGATGCAGTAATACAGAAAGGTTAACTAATTGATATTTGGAG
AGTAAGAGCAAAAAACATTTTGTAGCCAAGGAAGCAGGCTTTATTAATAC
GTGTGCTATTTTGATGTTTATATTTGTAATTAGCTGCAGAAACATGTGGG
GTTATAACTACGTTTATTAAAATTTTAGAAATATTTAGCTAAGAAAGGCT
TTTTTTCAAATCGAATTTTTATTCAGTTCTTTATTTTACTTAACTAAAAT
TTCCCTATTCTATGTTTTGAATAGCCCATAAGAAACAATGGTCAATATCG
TATGTAAACAGATTAGATTTTTTTTAAACTGAGCTACTTCTATTATACGT
GATTTGAGACCAGACAACATGGCTAACATCTGCACAAGTGATGTAATAAT
CTGATCTGAAAAAAAATCATTCCAATTATCTCAACTATTCTTCATTGACA
GTAGATAATTTTCGCTGTATTAAAGATTGTTGAGCGATGCTTTTAAGCAA
TGACATAAGTGTGCTATAGCAAAGACCTTTCATGATCACATGAGTAAGAG
TAATTCATTACTTGAGTGTCTTGCTTTCAAAAAGAAGGACCAATC Coding sequence (CDS) from alignment at xpSc0039678:173949..177843+ >transcript:BL96479_cuf7 ID=transcript:BL96479_cuf7|Name=transcript:BL96479_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=675bp|location=Sequence derived from alignment at xpSc0039678:173949..177843+ (Branchiostoma lanceolatum)
ATCATCACGCTTCACTGGAACGTCACTGATGACGAGAGTGGGGTTTCTTT
CTGTGAAGTCGCGATAGGTTTGAGTCCAGGATCAGGAGAGGTCCACCAGT
TTACCCAGCAGCCATCACTCTACAGCGCCACCTTTGACCTTTCCGGCCAC
CTGACAAACGGTGATACTGTCTACTCCACTGTCCGCTGTCATAACTACGC
AGGGATGACGTCACACGTGACGTCAGACGGCGTCACTATTGTCACTCAGC
CGCCAAACAGTGAGCACGCTATTGTAGAGACCGTGAGTGAGCCTCAGTCC
TACTACCCAAGTCGCGCCTTCCATCAGTCTAGTACTGACGCCATCCACAT
GTCATGGGAAGGCTTCTTTGATGATACCGGCATCCGGAATTATCAGTGCC
GTGTGACTGGTCCTGGTTTGACTGAGTTCCCTTGGATCGATGTTGGTCTG
ACCGGACAGACTCACGCAACCCTCTCAGGGCTCCACCTGCACGGCTACAA
CAGGTATGACGTACACGTCAGAGCTGTCAATCATGGGGGCATGGTCAGTG
ATGACGTCACCTCAGACATATATGTGGAGATGGAGCGACCGCTAGTGATG
GGGAAACAGGTTCCGGAGCTCGTGGCCCCAGCAGGGAGTGATGGTGTTCG
ACTGGACAGACGTTTTTCTCAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0039678 | genome | xpSc0039678:173949..177843 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96479_cuf7 |
| Biotype | protein_coding |
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