transcript:BL96482_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96482_cuf4
Unique Nametranscript:BL96482_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96482_cuf4

>transcript:BL96482_cuf4-protein ID=transcript:BL96482_cuf4-protein|Name=transcript:BL96482_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=308bp
NRTFEPGAVPTVAYDVSSVDGSGIMVYAGACGDVNFGNLSRATGSSIRLD
QSTMEIGVPYVIKVTATVNLTAKHIVVDFQQEIHIVNGGPLPTFSIKCVS
NCLAVLNPTEDFKLEANCTSCDKNDAMAFSWRLYEENLQTGDVTETPNWA
DMSNNDIYKRTLKVEKYNLDFSKKYRFRISGQPVTNGSGSFAEYHVLTTP
KYNMTCSAIPRAGFAAETGFFISAHLPENEAGLADENPKFSFSTTSLLSR
QSSPMAGPYLLPIGDPDEDYKVPVTVTAIGDHGSYAECIAKPSVLPPLKD
ELQLWQLI
Run BLAST on NCBI

mRNA from alignment at Sc0000162:208038..212402-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96482_cuf4 ID=transcript:BL96482_cuf4|Name=transcript:BL96482_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=4365bp|location=Sequence derived from alignment at Sc0000162:208038..212402- (Branchiostoma lanceolatum)
CCAATAGAACATTTGAGCCTGGTGCCGTTCCAACGGTCGCCTACGATGTG
TCATCGGTCGACGGCAGCGGGATAATGGTGTACGCAGGCGCGTGTGGGGA
CGTCAACTTTGGCAACCTTTCCCGAGCCACGGGAAGCTCTATTCGCCTCG
ACCAGTCAACGATGGAAATAGGGGTGCCTTACGTCATCAAGGTGATAAAT
AAATACATAGGATCAAAATTGGCAAAGCGACACAATCACTGAAAATCTCC
CTTTGATGAATCTTTAAAATAATAATACTTTATTTGCAACTTCATGCCCG
TAGGCTAATTGCAAGGGTACAAACAGTAGGAAGGGTAACAACGGTAACAA
GTGTCTATTCTATGCATCTAACTAATATTTCCACATACAACATTACTGAG
GGGTTTGACTTCTTCTTTGGAGGCAGTGGCTGATGAAAAGTCCCACGTTT
TTAATGATTAGCGGGTTTTGTGATTTTAGTAGAAATTTGGTTTTTTGGAG
GTCGTCTAGATAGTGAAAGCTCGGAAATATTGTTTTGGTTGTTTCCAAAA
GCTTGTTTCTTTCATCCTCATAATGAGGGCAGTTACAAATGAAATGTTTA
TCATTTTACATTGGTGTATAATTCAGCGACAACACTGCGTTTTTCTATAA
AGTTATCTTGTATCTGATTTGGAGCGGCAACTCAGAATGTGAAATTCAGG
GTGCGGCCATTTTGTTTTACCCGTGCGTCTCACGTCAGTGTGGCCGCTAG
GGAATATTGGCGAGAAGTCGCAAAGTTGGCGCAATTTTCCCGCAGAATTT
GGCGCAGTCAAGTTAAACACCCGTTTTAGGCTTTCAACTTAAACTCACTA
AACGAGAATCACGGACGGAACTCTAGATTTTCTGTCAGATTGGGCCTTCT
GAACAATCGTGTCTTTTATGGATTCGTCGAACACCCTTTGACGCACGCGT
GTTCTATTGCATGACGTAAGCTATTTGTTGCAGCTGTATCATTTTACCCG
ATGCACCATTAATACATTTATCTATTTATTCAAGGTAACAGCAACTGTCA
ACTTAACTGCTAAACACATTGTTGTGGACTTCCAACAAGAGATCCACATA
GTCAACGGCGGGCCTTTACCAACTTTCTCAATTAAGTATGTTGTGAGTCT
AATGTATGTTGACACTCGTCAAAAGCACCCGTTCATTAAATGTGCCATGG
ACTAATAAGATATTTACTGTACATATTACGCATGAAAACAAATAAACAAA
TACATATATAAAAGATAGCATTAGTATAATGATATAGTGTGTGTATTGTG
TACTGCGCTGTTCATTTTCTAGTCACTCATTAATCAATGTGCGTAACGTT
ATGTGTTTTTGTATGATAAGAAAGTCTACTTGCTCTCATAATGGTTATTT
TGTACATTGTTTATTCTATATTTGAAATTTTCTCTTATCATTCACAGATG
TGTGAGCAATTGTCTTGCCGTTCTTAATCCAACAGAGGATTTCAAATTAG
AAGCCAATTGCACGAGCTGCGACAAAAATGACGCAATGGCGTTCAGCTGG
CGACTATATGAAGAGAATCTCCAAACTGGTGACGTCACGGAGACACCTAA
TTGGGCTGATATGTCAAACAATGGTAGATTATGTTTTATCATCTACTGTA
AAAGTGAAAATGTTCGTGGACGTTTTACACATGTAGGGAGGGTCCCGAAA
CTTCGGCATACCCGTAACTTCGGACGGATTTGTAATTGCCTCATTATGCA
GACCTGTTTGTTTTCACAGTTACAGTGCTGAATAAAATCGCTAAGAAGCC
AAGTTGATGTTTGTGTAAAGTTATCCGATTTTTGCGCCACCAAGAAAATT
TGGCTGTAAACATCTCTCACCTAAACTTTCTTGTTTTACACATAAGGCAT
AAAGACAAAAAACGTGGGTCTTCGTTAGTTTAAATGTCGCGATTAAGCTG
GTCGGAAATAACTACATAACCGCGGATTCGGACGCCCTTCCCTTTTACGT
CACGGCCATTCCGTTGACCACGATTCGAATGTTATACGACAGTGTAGGCA
TCTCTGGTCCCGCGTACATCAAGTAGGGCTCCAAAACGGCAAATATTCTT
TTGTTATCTAGCTTGTTACACGTCGGTTAAACTTGCGTTTGATAAGTTCC
CGGTTGCCGGCTTGTACATTGTTCACAAGCAAACATGTAACCTTACCACG
AAACTAAAACCCCGCAAACTTTTAGCCATTATATAGTATATCTGTGTGGC
GCATGTAACATTATGACGGATAGCACAAGAGTGACAGCCACGTGATTGCT
ACGTGATTGCTACGTGATTGTCACGTGATTGCTACGTGATTGCTACGATA
ACACCAGTTTGGGCAGCTTGCAGCCACGCTGCTTGCCATGTGATTACCAT
GTGATGTATATCTGTACCAGGCACAAAGAAGGCGCTTGCAACTTTCAAAC
AATGAACAAGCAATGTAAAAATGATAAATCAAACTGCATCCTCAATTCAC
CAACGATCTCCCCCCCCCCACAGATATCTACAAGAGGACCCTAAAGGTAG
AAAAGTACAACCTAGACTTTAGTAAGAAATACAGGTTCCGTATCAGTGGC
CAACCGGTTACTAATGGATCTGGAAGTTTTGCAGAGTACCATGTTCTTAC
GACTCCCAAATACAACATGACGTGCTCCGCCATTCCTAGAGCAGGTGAGG
CCTGTTTTGTTTTGAAGTCGTTGGTTGTATTGTTATTACAGACAGCACCA
TTGAAAATACTGAAGGAATTGAGATCCCTCAATGAATGAATGAATGAGTG
AATGAAAACCTTTATTACATATACCCACTGGGTTCAGTACAGGTCACAGC
AGAAAACGTCACAGTTTACAAATAGAGTCAATCCCACATGACCGTGTGGG
TGTTTGTTGCCTTTTGTTTTAACATTTTCAAAACCTTTGAAACAATCTAA
GTGGGATAAGTAACTGTTTTCTAACATTCATTTGATGTTTTAAATAGTTT
CTGCTCTGTTCCAACATGTTTGACAAATTTCTAAAATTGCGCATGTTTCC
TGTGTTAGTTTCGAAACTGTTTCAACATAGATTCATCATTTCTTCCAAAA
TGTTCCAAAATTATAAAAACATTGTGTAACTAGGTCAGTGGTCTTGGTAC
AGGGCAATTCGCACATCACTTCAAAGTCTATGGAATTATCCCTGGCTGCT
ATGCATAGACACCTCAAGACAAAAGAGTTGTCAGTGTCCAGACGTGAAAT
TTAAAAATATACAGAGGCAGACAATAGAGTGCGATTTCCACCTACTTTTA
TGGGGGCAATAACTCAAATCTACCATTTGGAAAATGATGCAAGTTGTTGG
AAAATGTTCCAACAGTGAAAGAATCACATAGATGTTTGAATATTGTTCTA
AATAAAGAGATATTTGTGCAATTACTTTCAAACTATTTCCAAAATACATA
GATACGTTCAAACATGTTCAAACTTTCATTCTTGATTGTTTGAACAATTT
AGAACAATTTTGACTGAAATAATCTTTTATCTAAAATTGTTCAAACTAAT
TAGCAATATTATCTAAAAACCCTCTCGGTGACATGAAAGTGACTCTACAT
ATATACAAAAAGGACACGCTAGCACTAGTCTGATAATCACATGGATTTGG
CTTCTTTCATTTGTCACACATCAAATACCCACCTTTTTTTCTGAGAAAGT
ATTGATAACACTTTTTTTCCAATGTTGTGGTCACAGCGTTAAGAGATTTG
ACATAACATCGTTACAAATGTGCAACTCTTCATGATGATAGGATTTGCAG
CTGAAACAGGGTTCTTCATCTCAGCCCACCTCCCGGAGAACGAAGCAGGC
CTGGCAGACGAGAATCCGAAATTCAGCTTCAGCACGACGTCTTTGCTGTC
AAGGCAAAGTTCTCCTATGGCTGGACCGTACCTGCTGCCGATTGGTGACC
CTGATGAAGATTACAAAGTGCCTGTCACGGTCACGGCTATTGGTGACCAC
GGATCCTACGCAGAATGCATCGCCAAGCCTTCGGTTAGTGACGACTTTAA
TACAAATCGTTGCACCCTGTTTCAGATAACAGCTACATTTATGGTTTTCC
TCATGCCATTTGTGAAAGTTAACTAGCAAGCATTTCAAGACCAAATAAAA
TTACCGAGTATTTTTCCGCATGACCCAAAGCATGGAATATGGGTAACTTT
ATTTTTGGGTAATAATCGAATTAAATGACTTAACGTTATATTCATATACT
GTGAACGGTTATACTCCCGAAAAAGTTTTGAATCTTACGAAGCATTATTT
GTTTTGTACGGTACATAGGTATTGCCACCTCTGAAAGATGAACTGCAACT
GTGGCAACTGATTTT

Coding sequence (CDS) from alignment at Sc0000162:208038..212402-

>transcript:BL96482_cuf4 ID=transcript:BL96482_cuf4|Name=transcript:BL96482_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=924bp|location=Sequence derived from alignment at Sc0000162:208038..212402- (Branchiostoma lanceolatum)
AATAGAACATTTGAGCCTGGTGCCGTTCCAACGGTCGCCTACGATGTGTC
ATCGGTCGACGGCAGCGGGATAATGGTGTACGCAGGCGCGTGTGGGGACG
TCAACTTTGGCAACCTTTCCCGAGCCACGGGAAGCTCTATTCGCCTCGAC
CAGTCAACGATGGAAATAGGGGTGCCTTACGTCATCAAGGTAACAGCAAC
TGTCAACTTAACTGCTAAACACATTGTTGTGGACTTCCAACAAGAGATCC
ACATAGTCAACGGCGGGCCTTTACCAACTTTCTCAATTAAATGTGTGAGC
AATTGTCTTGCCGTTCTTAATCCAACAGAGGATTTCAAATTAGAAGCCAA
TTGCACGAGCTGCGACAAAAATGACGCAATGGCGTTCAGCTGGCGACTAT
ATGAAGAGAATCTCCAAACTGGTGACGTCACGGAGACACCTAATTGGGCT
GATATGTCAAACAATGATATCTACAAGAGGACCCTAAAGGTAGAAAAGTA
CAACCTAGACTTTAGTAAGAAATACAGGTTCCGTATCAGTGGCCAACCGG
TTACTAATGGATCTGGAAGTTTTGCAGAGTACCATGTTCTTACGACTCCC
AAATACAACATGACGTGCTCCGCCATTCCTAGAGCAGGATTTGCAGCTGA
AACAGGGTTCTTCATCTCAGCCCACCTCCCGGAGAACGAAGCAGGCCTGG
CAGACGAGAATCCGAAATTCAGCTTCAGCACGACGTCTTTGCTGTCAAGG
CAAAGTTCTCCTATGGCTGGACCGTACCTGCTGCCGATTGGTGACCCTGA
TGAAGATTACAAAGTGCCTGTCACGGTCACGGCTATTGGTGACCACGGAT
CCTACGCAGAATGCATCGCCAAGCCTTCGGTATTGCCACCTCTGAAAGAT
GAACTGCAACTGTGGCAACTGATT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96482gene:BL96482Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96482_cuf4transcript:BL96482_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96482_cuf4-E1BL96482_cuf4-E1-1564476830-358110Branchiostoma lanceolatumexon
BL96482_cuf4-E2BL96482_cuf4-E2-1564476830-358107Branchiostoma lanceolatumexon
BL96482_cuf4-E3BL96482_cuf4-E3-1564476830-358105Branchiostoma lanceolatumexon
BL96482_cuf4-E4BL96482_cuf4-E4-1564476830-358103Branchiostoma lanceolatumexon
BL96482_cuf4-E5BL96482_cuf4-E5-1564476830-358101Branchiostoma lanceolatumexon
BL96482_cuf4-E6BL96482_cuf4-E6-1564476830-358099Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000162genomeSc0000162:208038..212402 -
Properties
Property NameValue
Transcript idBL96482_cuf4
Biotypeprotein_coding