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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96485_cuf1 >transcript:BL96485_cuf1-protein ID=transcript:BL96485_cuf1-protein|Name=transcript:BL96485_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=170bp
QQVHEEIDSVLGQAVPSYALRDKMPYTTATLAEVQRINTILPFSVPHSAS
GDTTLNGYTIPDDATILVNLWSVHMNPQLFPEPDNFNPNRFMDQDGNFVK
HEALIPFSVGPRVCLGEQLAKMELFLLFVSLMQRFSFHLPEGAPAPSTTG
NMTAVINMPHPYDLCAVPRG Run BLAST on NCBI mRNA from alignment at Sc0000122:843106..847349+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96485_cuf1 ID=transcript:BL96485_cuf1|Name=transcript:BL96485_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4244bp|location=Sequence derived from alignment at Sc0000122:843106..847349+ (Branchiostoma lanceolatum)
CAACAGGTGCACGAAGAGATCGATTCCGTCCTGGGACAGGCTGTTCCGTC
CTACGCCCTCCGGGACAAGATGCCCTACACAACAGCGACCCTAGCGGAAG
TGCAGCGCATCAACACCATATTGCCCTTCAGCGTCCCGCATTCAGCTTCC
GGGGACACCACTCTCAACGGTTATACCATCCCAGACGACGCAACTATCTT
GGTAAGTGCGTTTTCATACATCTGTGTCAAATTGTGCCATTTGAATGGAT
GATAGTACTTCTGGCTCATACAGGTAGCCGAAAAGAATACATGGATAATA
TTGTCAGTGGTGTCTTGTTGAAATTTCAGGCAATTATCCTTCGTGGAATA
TTTGATATCGACAGTAATGCTCAATTTAACGTACTTAGATATTACAAATA
TGAATTTCTAAAATATTGTTTCTTTGCCAAAGTCAAAGTCTATGCCAGGA
AAATATAGAAAAGGGAGCTTACGCGCAATCCCTACAGTGATTAACAATAC
TGTAAGAAAATATGCGACTTTCATTTCATATTGCTTGCAAGTCTTAATAA
AGAGGAGGATATTCGTGATCTCAATTTTCCAGCAGGTCGTGCAACCAGAT
TCCGTGGTGTAGCGGTTATCACATCTGCCTAACACGCAGAAGGTCCCCGG
TTCGATCCCGGGCGGAATCACTTTTCGTGTTTATATACAAATTTAACATT
TCGATCTGATCCAAAATCCTTTTTATCACCTTTGGCCTTTGGGTCACTAT
CAAAATTAGAAAACCATTGGGTCTGGAGGAATTAACATCCTGTTAAGATT
GTTCACATGGTCATAGCATGGTGGGACAACACCATAGCACTGCGGCCAAT
CGGTTTTTACACACCTGTGCTGTTTTGTAGGTGAACCTGTGGTCCGTGCA
CATGAACCCTCAGCTGTTCCCGGAGCCGGACAACTTCAACCCCAACAGGT
TCATGGATCAGGACGGAAACTTTGTCAAGCACGAGGCGCTCATCCCGTTT
TCTGTCGGTGAGAGGCACAACTTATATCTGAATCATCGGCATTCGAGAAT
CATGTATTATAATTGATTTCGGACAAGTATGAGTTTAATCGAAATTGTAT
ATCTGACGAAAATTTTCTCTTAAGCTAACCTAAAACTTTCTGTTTGTTCA
TTTGATTGTTTGCTTGCCTACTGTTTGGTGAGCTCAGTAGAGAAAATGGA
TGAAGGCACGGAGCTTCCAGTGCTCTTATGTGCCATTGAAAGGTGCATTC
AATGTGAACAAGCACGTAACAAAAATGTAATTTACACGGACGTTCGCTTG
ACAGGGAAACGCTCATCAATGATTTAAAAAAAACATTGTTTTCGATATCA
ATTCACAACATTACATTCAATTGACAATCTTACATTCAATTCATAATCTT
ACATTCAATCCACGGTCCTGCATTCAATTCACAATCCTACATTGAACCCA
CAACCCTACATTGCTATGTACAACTCGTTGGTGCTAAATTATCAATAATT
TTTGAACCACAGGTCCTCGCGTATGTCTGGGGGAACAGCTGGCAAAGATG
GAACTTTTCCTGCTGTTCGTTTCCCTGATGCAGCGTTTCAGCTTCCATCT
GCCAGAGGGCGCCCCTGCACCGTCCACGACAGGAAATATGACCGCAGTAA
TCAACATGCCCCATCCTTACGACCTCTGTGCCGTCCCGCGTGGCTAGCTC
TTTTGAACTGACGCCAATTGATATCAGACCAAAGTAAAAATGATTCCGCC
CGGGATCGAACCGGGGACCTTCTGATAATGATAATGATAACGATAATGAT
AATGATAATGATAATGATAATGATAATGATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAGTAATAATAATAAAAACTATTATT
ATTATTGCATATTCCTGCCCAGATGGGCTAAATGCACATATGACCACACG
TGGTCTATAAGAAGCATAATACAAAACATGAATTGATAAGCAGCTACATT
CTAACATTGAAAAACTAAAAGATAGACAAACTGAGAACTATTGCTAAACT
AATGTTGGTCACCTAGTAGTTTCTTCTCTCTTTTTGAAACATTTTGAAAC
ATGACTACACATCTTTTCTATTATATGTTCGTTCGTACATGACATCAGGT
ATATAAAAGTGTCCTGCTTTGACATTTTGGTACATTTCTTGTCTAATCCT
ATTGTCTTAAACAGCGATTGTCGCTCATCTTCATATCACCCTCCTCAGCA
GGCCTGACTCGCTCGGTATGTTACCTCCCGCATCGCCCCTGCTATTCCAA
GCCCGTATTCTGGCGACGTTACTGACAGTTGCTCATGAATAATTAATGAT
CCAGCCTTATTTGGCACAAACAGCCCTTATTTTGCTCTGAACCCAAAGTA
GCGATGTAAGACGTAACCTGATTGGTTGATATCTTCCCAGCGACCTTTGC
GGTTTTACACAAGATGAAAAAGATGAGCTTGTGCAAAGCCTCTGATTGGC
TGAAAGCTGTTTTGGTGTTGACGTCGCCAGAAGCCAGAATAAGGGCTTGG
AATAGCAGGGCCGATGCGGGAGGTAAAGTACCGAGCGAGTCGGGCCTCCT
GAGGAGGGTGGTTAATATCAGACCTAAAATTGATTCCGCCCGGGATCGAA
CTTCTGTGTGTTAGGCAGATGTGATAATTATAACCGCTACACCACGGAAT
CTTGCTATACTCGACATGCTAAAATGATATATATATCAGGTATCTTTCAT
AAAAATGAACGAATAAAAGACCTAGGTTTTTATTGTACGCTTACGCTCTT
AAAAGCCAAGTACTGTACATGTCATGGTGATAAAGCATAATTATCATAAG
GCCACAGGAATTAATTTTCATGGATAACATCAGCACGCTCATTAATTTTC
GCCTGATTTCGAAATAAAAAACACGAAATTTCATTGCCCTCCGACGGTGG
TCAACATGCTAAAAATGGGCAAATCTGTCGTAAACGTTGAGAGTCTATAT
GAATACCCAGTGTAGTTCCTGCCCATGATGGTATGACAAACTGTTTTCTG
CGTTTGTTCTAATTAATTAAGCTGTATACACATCTTCAAGAACAGTTTAA
TGTTGACAGTCTATAATGTTTCGTTGCATATGGATACCCAGTGTGGTTCC
TGCCCATGATGGTATAATAACAAGCTGTTTTCTGCATTTGTTCTAGCAAG
GACATTATATAAATAATGGGGGGGGGGGGTTCTAGTTAATTGAGCTGTAT
ACACAGGGTGTTTCATCGCATATGAATACCCAGTGCAGTTGCTTCAGATG
ATGGTACAACAAGCTCTTTTCTGCATTTGTTGTAGTTAGTCTAATGAGAT
GTATACACATCTATGTAAAGGACATGTTTATTGTTGAATCAAGGAGGTTT
TATATTACATTTGTATATATGAAACCTCATTAGTTGAATACAGGAATAAA
AGACCTGTTGGTCATGATACCATATTTCGTCGCCTCAATTCTTGTTTACC
AAGATTTATGATCTCAAAATTTCAAAATATGGGAATCTTGTTTTTTTTGT
TGCCCGCCTTGTTTTTTTCGCACTATCTCATTAATTTTGGAGTCTGCGGA
GGATGTCATCCATAAAATTTACTTGCTGTGGCCTAAGTATAATCACAGTA
ATATCAAAACGTCATATCTTACTACATCTCAAGACTAATTAATATTACTA
TGTACAGGATGAACTTCACATTTCTTGTAATATTGTTACCCCCTTATTCC
GCACCGCGTGCTTCTTCTGTGTTATAGTAAATGACGGCGGTGCCTTTATC
AATGCGATTTTTGTCAGTTGCCAGATACCTACTCCCACACGAGGAGGGTA
ATCGCTGAAAAGGTGCAATAACAGAAATGAGTTTTACAGTTTTTTTTAAA
GGCATCCAAAAATTACACAAAAGGGAACTGATTTGTTAAGAAAATGAACT
AAATGTGAGCAACAAAATGGTACGGTGTGCTGAGATTTGAACTTTGAGTA
TCTTTAAAATTCCAGTGAAAAAGCGATGTCTCACTAGCTCAAGTTAGTAG
TATGGTGATCAGTTCGTACTATGGCGATCAGGAGGCCCCCGGTACGGAAA
ACTTTTTCCTTTTCTCTTTTTTTCCTTTTTCCCTTCTTTTTATATAAGGA
GGAGATCTATTGTTTTTGCTGGCGTGTCTTCATCTTTTTCTTCTCTTTCT
TTTGCATGATTTATTCAGGAACTTGTATTTCCCTTGCGATAAAT Coding sequence (CDS) from alignment at Sc0000122:843106..847349+ >transcript:BL96485_cuf1 ID=transcript:BL96485_cuf1|Name=transcript:BL96485_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=513bp|location=Sequence derived from alignment at Sc0000122:843106..847349+ (Branchiostoma lanceolatum)
CAACAGGTGCACGAAGAGATCGATTCCGTCCTGGGACAGGCTGTTCCGTC
CTACGCCCTCCGGGACAAGATGCCCTACACAACAGCGACCCTAGCGGAAG
TGCAGCGCATCAACACCATATTGCCCTTCAGCGTCCCGCATTCAGCTTCC
GGGGACACCACTCTCAACGGTTATACCATCCCAGACGACGCAACTATCTT
GGTGAACCTGTGGTCCGTGCACATGAACCCTCAGCTGTTCCCGGAGCCGG
ACAACTTCAACCCCAACAGGTTCATGGATCAGGACGGAAACTTTGTCAAG
CACGAGGCGCTCATCCCGTTTTCTGTCGGTCCTCGCGTATGTCTGGGGGA
ACAGCTGGCAAAGATGGAACTTTTCCTGCTGTTCGTTTCCCTGATGCAGC
GTTTCAGCTTCCATCTGCCAGAGGGCGCCCCTGCACCGTCCACGACAGGA
AATATGACCGCAGTAATCAACATGCCCCATCCTTACGACCTCTGTGCCGT
CCCGCGTGGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000122 | genome | Sc0000122:843106..847349 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96485_cuf1 |
| Biotype | protein_coding |
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