transcript:BL96488_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96488_cuf1
Unique Nametranscript:BL96488_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96488_cuf1

>transcript:BL96488_cuf1-protein ID=transcript:BL96488_cuf1-protein|Name=transcript:BL96488_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
GTKPAALEKGDVDSLQLVKPVDGGASKTGNKAAPAGHKLILVADSTDRTI
TRLTTDDDINYQSTRYTIGNGAHRPIAVDYDPTEDFIYWTSVNGANSLV
Run BLAST on NCBI

mRNA from alignment at Sc0000122:42309..43164+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96488_cuf1 ID=transcript:BL96488_cuf1|Name=transcript:BL96488_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=856bp|location=Sequence derived from alignment at Sc0000122:42309..43164+ (Branchiostoma lanceolatum)
GGGAACCAAACCGGCAGCCTTGGAGAAGGGCGACGTTGATTCTTTACAAC
TCGTCAAACCTGTGGACGGTGGTGCTTCGAAGACTGGTAAGATTCTAAAG
TGCCTTTGAAAAGCAAACAGTACAGAATCATCGTGATTATATACAAAGCC
CCATGTGAGTTAAGAATAAGACATGGTTGGAGGACGTCATGGAGAGATAT
GTGCTTTTTGTACGCTGGACGACATTACATATGATATATCATAAAGATAT
ACATCATAAGATATACATGATATTATCTCAGTAAAATTCAAGATTGAAGA
CCTGTGTTTATCTCCACAGGAAACAAAGCTGCACCGGCGGGACACAAACT
GATCCTGGTGGCGGATTCCACGGACAGGACCATCACTCGGCTAACTACAG
ACGATGATATCAACTATCAGTCTACTCGTTACACCATTGGCAACGGTGCC
CATAGACCAATAGCTGTTGATTATGACCCGACGGTATGATATTAATAATC
GATTTTCAGAATTAAAGTATACTCCATTCAAGTTGTTGTATTGGAATACT
GGCTGTACGATGCAAAGAATATGGGGCATAACGGCACTTTGATCATGAGT
ATCCTCGTACATTTATTGTATGCACATTTGTGGATGTTTAAATAGAATAA
GGTCCCCTAGCTAACTGCTCTCACAAATATTTTCCTTCTGGTATTTTCCT
AGAACAGCTCTAGCATTTTCATGTTTTAATCCTAGTCTATTGTCTATGGA
TGATGAGAAGAAGATCTACAATATCTGTCAATGCTATTTCTATCCATTTT
ACACAGGAGGATTTTATCTATTGGACCAGTGTTAACGGAGCAAACAGTCT
GGTAGC

Coding sequence (CDS) from alignment at Sc0000122:42309..43164+

>transcript:BL96488_cuf1 ID=transcript:BL96488_cuf1|Name=transcript:BL96488_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=297bp|location=Sequence derived from alignment at Sc0000122:42309..43164+ (Branchiostoma lanceolatum)
GGAACCAAACCGGCAGCCTTGGAGAAGGGCGACGTTGATTCTTTACAACT
CGTCAAACCTGTGGACGGTGGTGCTTCGAAGACTGGAAACAAAGCTGCAC
CGGCGGGACACAAACTGATCCTGGTGGCGGATTCCACGGACAGGACCATC
ACTCGGCTAACTACAGACGATGATATCAACTATCAGTCTACTCGTTACAC
CATTGGCAACGGTGCCCATAGACCAATAGCTGTTGATTATGACCCGACGG
AGGATTTTATCTATTGGACCAGTGTTAACGGAGCAAACAGTCTGGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96488gene:BL96488Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96488_cuf1transcript:BL96488_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96488_cuf1-E1BL96488_cuf1-E1-1564476830-324289Branchiostoma lanceolatumexon
BL96488_cuf1-E2BL96488_cuf1-E2-1564476830-324291Branchiostoma lanceolatumexon
BL96488_cuf1-E3BL96488_cuf1-E3-1564476830-324294Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000122genomeSc0000122:42309..43164 +
Properties
Property NameValue
Transcript idBL96488_cuf1
Biotypeprotein_coding