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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96490_cuf5 >transcript:BL96490_cuf5-protein ID=transcript:BL96490_cuf5-protein|Name=transcript:BL96490_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=599bp
HIPKAVVGSCGVQRNSPTAQAEAVQVSIFEPGPTFSCVTDDNNQYDVHVL
AVYEGIRSRWWGSQQDDTEAAEVDVHVIAGQVSKPVVLVLSSYEAVNWML
HLPEDVEVHKVLLVAYHIDQSNVTVRSGSVNTVQRLPGRTEGVPACAYGK
DDDGCNTVDLLKYVERDFGPVSSFTGTYRAGRWNLRIGLAIQCPTLTAPT
NGILYPPGATSYQDKVLFFCNTDYVRNGALETTCQYNGMWSSPAPTCTRR
QCQPLTAPRNGALSPVGANSYQDRVTFTCNTGHRLRGASSVTCQADGTWS
RSVPICTGPCPALTAPMNGALIHTVSSSANDVVTITCNNGYVRNGALYTV
CQADGTWSNAVPTCTRTPESSSHSGASGTAIGAFVGVLAGLILIVGFICY
CNRRHARTPSADRSPYNPTDIPLEPTGHEGLYPDGVPPYPTGALPYPDGA
PPYPTGAPPYPMGAPPYPGGAPPYPTGAHPYPIGPPPYPTGAPPYPAGAP
PYPSGAPPCPPSAPPYPIGGAPSFSTAPDTPGQNYTYPTAIVNPAGPPSA
FQNQGVANPGFEPPPYPYPPPGLASPPAATTGQNNRQEAVEMSAMDTSK Run BLAST on NCBI mRNA from alignment at Sc0000122:47135..53041+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96490_cuf5 ID=transcript:BL96490_cuf5|Name=transcript:BL96490_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=5907bp|location=Sequence derived from alignment at Sc0000122:47135..53041+ (Branchiostoma lanceolatum)
CATATACCAAAAGCGGTTGTTGGGAGCTGTGGAGTACAACGCAATTCTCC
GACAGCCCAAGCCGAGGCCGTTCAGGTATCCATATTTGAACCCGGACCGA
CCTTCAGCTGTGTCACTGATGACAACAACCAGTATGACGTGCATGTCCTG
GCCGTGTACGAGGGGATCAGATCCAGATGGTGGTGTGTACAAAATAGTGA
AAACAAATCATCCAATAGCTTATCCATTGTGTTTCAAATGACATATTAAT
CGGGCAAAACAGGCAAGAGAATTAGAGATCCACTCCTGCAAACTTTGCTG
AATATGTCCTCTTTGACTCTTCCGTAGAACTACTTACTTTATTCGCATGT
CAATCAATAGCTCTTGGTTAAAAGCCTGCAGATCGAAAAATCTTGCTCTG
TTTCAATGACGAAAAGTTGTGGATGCTATTCGAAACGTCTGACCGTTTCC
AAAATCATATCCAGTTGCTTGAGCAAATGCAATTTTGCGTATCTTATTAC
CTGGATGTCTAGCCTTCGTGGACGTCTTCTGATCATGCATTGCTTTCAAG
GGGTTCTCAACAAGACGATACGGAGGCAGCTGAGGTGGACGTGCACGTCA
TCGCAGGCCAAGTCTCCAAACCTGTGGTCTTGGTGTTGAGCTCGTACGAG
GCGGTCAACTGGATGCTCCACCTACCGGAGGACGTGGAAGTGCACAAAGT
GCTTCTGGTAAGAACTACTTATATTTGTAACCTGATAAACAGGAACCTTC
TCGGCAGTATTTGAAGTTGTAAAGTAGCTGACTTGCTTGTTTGTTTGAAG
AAACTTGACATTTACACTCCTGATGCAATTGTGTCGGAAATATTTGGTCT
TAAAACTGTCGCCATCAAACAGCGTATACATGTACTTAATTTCATGGCAA
CCAATTAACTATCAAAAAACATAATATCAATAAAAGCGAATAAAATCAAT
CTAACGATACGATTGTTCTTACTGAAATTTAGGATTATGAATTTAGATTT
TTGACATTTTTGAGGTTAATCTACATCTTTAAAATGGAAAAGATCGAACA
ACTACGTTTCAGTGAGCATTATGTCACACAACAACTAAAAGAAATGTCAG
GAACCTGCCTGACATGGTTTTTGCGTCTGTTTGTCGAGATTAAACAATTT
TGTCCGCAGGTTGCATATCACATCGACCAGAGTAATGTGACTGTACGGAG
TGGCTCTGTGAACACTGTGCAGCGCCTGCCAGGGCGGACAGAGGGCGTTC
CCGCATGTGCATATGGAAAGGACGACGACGGCTGTAACACTGTCGATCTG
CTTAAATACGTTGAAAGAGATTTTGGCCCTGTCTCCTCTTTCACTGGTAC
ATACAGGGCGGGCAGATGGAACTTGAGAATAGGCCTAGGTATGTGTATCT
AATATCTTCATGAAAAATGGAGATATTGTTTTGGGTGTGTCTGTGTGTCT
GTCTGTCTGTTTGTCTGCCTGTTTGTGTTTCCGGACTACTGTAGTCATCA
TAACTAAAGAACCTCTTGATGGATTACAATGATATTTGGTATGTGGGTGG
GTGTTTTGAAGCCGAAAATCAAGGTCAATTTTGGGCCCCCTGGTATCTGA
CCTTGGTACTGCAGCAGAAATTCCATGTTTGTATCTTTTGACCTGGACGT
GCTATGGTCTTGATTTTCTTGATAGCTTGTGGTGTAATGAAGACTTGGTG
TGGGTTTGGGCCCTCTAGTTTTTCATTTGCAAGAAAATAGGGTAACTTTT
CTGTATTCAAAAGATATATAGATTAACGGGCGTCATTGTGTACATCTTAA
GTCAATATAGTGATCCTATTTGCAAAATGTTTTTGACCATTTCAGCCATA
CAGTGTCCAACGTTGACCGCACCAACTAACGGGATACTGTATCCTCCCGG
AGCGACCTCCTACCAGGACAAAGTCCTATTCTTCTGTAACACGGATTACG
TACGGAACGGTGCTCTTGAAACGACGTGCCAATATAACGGAATGTGGAGT
TCTCCTGCACCAACATGCACACGTAAGATGGCATTGAATCTAGTCAATAC
AATTTATTTACCTATAAATATGTAGTAGAAAATATTTGGTAAGAATGAAA
CTCAGTAGTTGCCGTACAGACCTTCCCTGACGGGCGCATTATTAGTATGT
AGATCCCTTACAAGTATAATAGTAAACTTCATTGACTACGATTTCTTTAC
TTTTTTAGGAAGACAATGTCAACCGCTGACAGCTCCAAGGAACGGAGCGC
TGAGTCCCGTCGGAGCGAACTCCTACCAGGACAGAGTCACGTTCACCTGT
AACACGGGACACCGACTGAGAGGAGCCTCTAGTGTGACGTGCCAAGCTGA
CGGAACATGGAGTAGATCTGTTCCAATATGCACAGGTAAGATGGCATCGG
AACTAATCAATATTCAGTAAGAAGATAATTAATCTACCAGTCAGCAAGTG
ATTCAAGTGGTTTTATAACAGGCTCATTTTTTTCATCGAATGAGTTGAAA
TTTGGCACAAAGGTAAAGGCACATACCGTTTTGAGACTGAAATATCTCAA
TTTGCTGTTGACATATTTTCATGTGCAACTGAGTTGATTTCAAGATGACC
ACACTATTGGAAGTCCGTCAGAAGATCAATTCCTCTAGATTTGACTCACT
CAAAATTAATGGAAGCTGAAATCACACCTGTATGATGATACATGTATATG
TCTCTATAGCTTGCATGACAACTTTCATCTCTGAACTCCAAACAGTTTCT
CTTTTACATCTGCTAGGATGGAGTGAGGTGTGGTATCATTATTATGATGA
TGATGATGATGATGATGAATGGTTTATTAGAGCCAGTTGGAGTCATAGCC
AAATAAGTTATGTGTTGATCAAAGTCTTTTGTAGACTCTTTCCCATTAAA
CAAACTTCACAGAATTATTCAGTATGTAAAGACCAAGAAGTGTGACAAGT
TTTATTTCTCTTAGTTTATAAAGAAACAAATATGGGAGAGTGGTCTACAG
AAACTTAGTTCATAAAGAAACAAATATGGGAGAGTGGTCTACAGAAACTT
AGTTCATAAAGAAATAAATATGGGAGAGTGGTCTACAGAAACTTAGTTCA
TAAAGAAACAAATATGGGAGAGTGATCTACAGAAACTTAGTTCATAAAGA
AACAAATATGGGAGAGTGGTCTACAGAAACCTTCTCCTGCTATACCTAAA
AGTGGTTCAGGGATTTTTTTAATTGCATGTTTCAAATTGATCCTCCTTTG
TAATGGTCTCTGCTTCTGACGGACTTCCAAGAGTGTGGTCATCTTGAATT
CAACTCAGTAGCTATGAAAATTTGAATAACAAATTGAGACATTTTAGTCA
CAAGACGATATGTTTCTTTAACTTTGTGCCAAATTACAACTCATTCGTCG
CATGATCCGATTAAAAAATGAGCCTGTTATAAAACCACTTGCATTACTTA
TTGATTCACCCTCGTACAATAGATAGTAAAGAAACTACTAGGAGTAAAGA
AACTACTAGGAGAAAAATGTGTCAATACTGTACAGTCCCTCCCGGCATTA
CCGGTAGGTACATGTAGTTCCTTACATTTCTTGACCAAGGTTATCTAATT
ATTTTAGGACCATGTCCGGCGCTGACGGCACCAATGAACGGAGCGCTGAT
CCATACTGTATCGAGTTCCGCCAATGACGTGGTCACGATCACTTGTAACA
ATGGCTACGTACGGAACGGCGCTTTGTATACGGTGTGCCAAGCTGACGGA
ACGTGGAGTAATGCTGTTCCAACATGCACGCGCACACGTAAGATGACATT
GAAACTAATCCACATTCATAAAAAAATGTGATTCATTTTAAAACGTAGCG
CCACCAAGCAGGTTATATTAATAACTTTATTGCACAACAGTTGCACAAGG
TACAAAGTATGGTGTTCACTGGTACATAGATAACATTCTATAACGCTAAC
CAATCTATCTAATACCATATTGTGTAGTAGTCTATCTTATACAATATGGT
GTCGTAGTCTATCTTATATATAACCTCCTTGGCGCCACCACTATTGTCGT
CCGATTTATTCAAAACGTCATGTATGCTAAAAGTAAACAGGGCAGAGCCA
AATGTTTAACCAGTTGGAAGAAATATCAGCATCTGAAAAGAAGAATGCTT
GGTATTTAACTTTTTCTCCGCCTGCTTTACGCCGTGCGAGAATATGATAT
TCATACTATAGCTAAGGTCTATATTGAAGAACGGTGCTGCGGTTACCCAT
GATCGTCCACTTGAGTCTTTCTCATTCTAGTTCTCTACTTGAAGAATATA
GATCTCACCGCTTGCTTGACGTGACTGAACTAAATATTGTTGTTAGTTAA
TTCACCAGGACTGAGAGAATGGTACAAACTGGTAGTCCTATTTTGATAGC
CCTTAAAATTTGTCTTATCATTCTTTTTTTGTAGCGGAATCGTCTTCACA
TTCCGGAGCTAGTGGGACCGCTATAGGCGCTTTTGTGGGGGTTCTAGCGG
GGCTGATTCTCATAGTGGGCTTTATCTGTTACTGCAACAGACGACATGTA
AGTGTTATAGTTTCAGTACTCGCCCCATACTTGTTGCTTGCCCATTTTCG
TTAGTCACATTTCCAAACCGGGGCCTGGCGTAGGGCAGTTTGCGGGAACG
AAAAGTATGATATAAAAGACAACGCAACAATCAAAACGTAAAAAATGATT
AATCATGAGCATAGTTTGCGTACATTTCTTGACATACACTTTTATTTTTC
GTTCCCTCAAACAGTCCGGCCGGGCCCAGGTTTGGAAATATGACCAGAGC
ATAGAACAGCGCTGATCGCAAATTCCGTGGCCATATCATTATTTCAAAAC
TTCCAGTTCTCACAGCTGGCTACAGTAAAATATTTCATTGTAGTTGCAGC
CCGGAGGTCGTTTGGGCTACCGACGAGCACCATCATTTATCGTTGAGATC
AAGGAGATTTTATAGACTACATAACATAACCTCGTTGTTGAGATGTCATT
GAAATATCATTGAAAGTACACTGGAAGACCTTGGGGATTATTAAGCCCTG
ACTAAAATACCGTTGAAAAGACTGTCAACTTTTGGATGCTCGCAGACGGC
GTTCAAACGGTCTAGCCTCTATAATCCCACATAGGAGATAGGAAGTTTCT
CATTTGAATATGGCCATGTCTGTCTTGTCCTCTTTTAGAAGGCTGCTGAT
TGAATTTAGAAGACAGATTAACAGATTACAGGTACAGGTGATATTTCCGC
TTTTAGTCATTCAGGCGTTCACAACAGCACTAACCTGCACGTATTTTCCT
TTCAGGCAAGAACTCCATCTGCAGACAGGTCCCCTTATAACCCTACCGAT
ATCCCACTCGAACCTACCGGCCACGAGGGTCTATATCCTGACGGCGTCCC
TCCCTACCCAACGGGCGCTCTTCCCTACCCTGACGGCGCCCCTCCCTACC
CTACCGGCGCCCCTCCCTACCCTATGGGCGCCCCTCCCTACCCTGGCGGC
GCCCCTCCCTACCCTACCGGCGCCCATCCTTACCCTATCGGCCCCCCTCC
TTACCCTACCGGCGCCCCTCCCTACCCTGCCGGCGCCCCTCCCTACCCTT
CCGGCGCCCCTCCCTGCCCTCCCAGTGCCCCTCCCTACCCTATCGGCGGC
GCCCCTTCCTTCTCAACCGCTCCCGATACCCCCGGACAAAACTACACTTA
TCCTACAGCAATAGTAAACCCAGCCGGCCCGCCATCTGCATTTCAGAACC
AAGGAGTTGCCAACCCAGGATTTGAACCCCCTCCTTACCCATACCCCCCT
CCCGGACTGGCGTCTCCCCCCGCGGCAACAACCGGGCAGAACAACCGACA
AGAAGCTGTAGAGATGTCAGCAATGGATACTTCTAAGTAAATCCTGTTCC
GAGCAGA Coding sequence (CDS) from alignment at Sc0000122:47135..53041+ >transcript:BL96490_cuf5 ID=transcript:BL96490_cuf5|Name=transcript:BL96490_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1800bp|location=Sequence derived from alignment at Sc0000122:47135..53041+ (Branchiostoma lanceolatum)
CATATACCAAAAGCGGTTGTTGGGAGCTGTGGAGTACAACGCAATTCTCC
GACAGCCCAAGCCGAGGCCGTTCAGGTATCCATATTTGAACCCGGACCGA
CCTTCAGCTGTGTCACTGATGACAACAACCAGTATGACGTGCATGTCCTG
GCCGTGTACGAGGGGATCAGATCCAGATGGTGGGGTTCTCAACAAGACGA
TACGGAGGCAGCTGAGGTGGACGTGCACGTCATCGCAGGCCAAGTCTCCA
AACCTGTGGTCTTGGTGTTGAGCTCGTACGAGGCGGTCAACTGGATGCTC
CACCTACCGGAGGACGTGGAAGTGCACAAAGTGCTTCTGGTTGCATATCA
CATCGACCAGAGTAATGTGACTGTACGGAGTGGCTCTGTGAACACTGTGC
AGCGCCTGCCAGGGCGGACAGAGGGCGTTCCCGCATGTGCATATGGAAAG
GACGACGACGGCTGTAACACTGTCGATCTGCTTAAATACGTTGAAAGAGA
TTTTGGCCCTGTCTCCTCTTTCACTGGTACATACAGGGCGGGCAGATGGA
ACTTGAGAATAGGCCTAGCCATACAGTGTCCAACGTTGACCGCACCAACT
AACGGGATACTGTATCCTCCCGGAGCGACCTCCTACCAGGACAAAGTCCT
ATTCTTCTGTAACACGGATTACGTACGGAACGGTGCTCTTGAAACGACGT
GCCAATATAACGGAATGTGGAGTTCTCCTGCACCAACATGCACACGAAGA
CAATGTCAACCGCTGACAGCTCCAAGGAACGGAGCGCTGAGTCCCGTCGG
AGCGAACTCCTACCAGGACAGAGTCACGTTCACCTGTAACACGGGACACC
GACTGAGAGGAGCCTCTAGTGTGACGTGCCAAGCTGACGGAACATGGAGT
AGATCTGTTCCAATATGCACAGGACCATGTCCGGCGCTGACGGCACCAAT
GAACGGAGCGCTGATCCATACTGTATCGAGTTCCGCCAATGACGTGGTCA
CGATCACTTGTAACAATGGCTACGTACGGAACGGCGCTTTGTATACGGTG
TGCCAAGCTGACGGAACGTGGAGTAATGCTGTTCCAACATGCACGCGCAC
ACCGGAATCGTCTTCACATTCCGGAGCTAGTGGGACCGCTATAGGCGCTT
TTGTGGGGGTTCTAGCGGGGCTGATTCTCATAGTGGGCTTTATCTGTTAC
TGCAACAGACGACATGCAAGAACTCCATCTGCAGACAGGTCCCCTTATAA
CCCTACCGATATCCCACTCGAACCTACCGGCCACGAGGGTCTATATCCTG
ACGGCGTCCCTCCCTACCCAACGGGCGCTCTTCCCTACCCTGACGGCGCC
CCTCCCTACCCTACCGGCGCCCCTCCCTACCCTATGGGCGCCCCTCCCTA
CCCTGGCGGCGCCCCTCCCTACCCTACCGGCGCCCATCCTTACCCTATCG
GCCCCCCTCCTTACCCTACCGGCGCCCCTCCCTACCCTGCCGGCGCCCCT
CCCTACCCTTCCGGCGCCCCTCCCTGCCCTCCCAGTGCCCCTCCCTACCC
TATCGGCGGCGCCCCTTCCTTCTCAACCGCTCCCGATACCCCCGGACAAA
ACTACACTTATCCTACAGCAATAGTAAACCCAGCCGGCCCGCCATCTGCA
TTTCAGAACCAAGGAGTTGCCAACCCAGGATTTGAACCCCCTCCTTACCC
ATACCCCCCTCCCGGACTGGCGTCTCCCCCCGCGGCAACAACCGGGCAGA
ACAACCGACAAGAAGCTGTAGAGATGTCAGCAATGGATACTTCTAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000122 | genome | Sc0000122:47135..53041 + |
Properties
| Property Name | Value |
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| Transcript id | BL96490_cuf5 |
| Biotype | protein_coding |
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