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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96491_cuf4 >transcript:BL96491_cuf4-protein ID=transcript:BL96491_cuf4-protein|Name=transcript:BL96491_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=229bp
MPRRRELAWRGCNMHCADVDECASHPCENGATCMDGINGYTCTCAAGYVG
DHCEERTRLIPFDGNLGPIIGGLSFRRRREATSTHWSRVGDVTSLVYDAD
SGEEEQLVSFAAPNLEDLGENDHLLGPLQYLTQDVEGFPTNYPATTTEAM
PSLVEDFDNMLDSFNCSNNGPNCNLTRGQDDVVKLDDNWYIVYRPAIEYD
PGSTKRGIRFRILIVAWRGFRIFIRCFIY Run BLAST on NCBI mRNA from alignment at Sc0000583:41444..46505+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96491_cuf4 ID=transcript:BL96491_cuf4|Name=transcript:BL96491_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=5062bp|location=Sequence derived from alignment at Sc0000583:41444..46505+ (Branchiostoma lanceolatum)
GTCTGGTGACACGCAGAGGACATGCCGAGAAGGAGGGAGTTGGCATGGAG
AGGATGTAACATGCACTGGTAAGTGCTAAAAAGTATAGATTATACGTCTT
CTGTCATCTGAAAAAAGATAACTATTATTAAACTGTTTTTTAGCCAAATG
ACGTGCAATTTGGTAGACTTTACAACCTTCTATAGACAATTTTGATGTAG
ACCTTTGAAATTATTCTACTAAGGATTTGTGGCAATTTTTAGACAAAGAA
CGTTTATTATGGAGCTCCTGTGCCTTTGTATTACAAGATTGACTCCGAAG
TTAGGGCTGCTCATTGGAAAGCGAGTTAGAATACATTGAAACAAGGCTTC
ATAAAAGTACTAACCAAAACTTTAATCTTCAAATTCTTCTCCACCAGTTC
GAAAGTCACAAGGGTCAAGTTCATAAAGTCCAAAAGAGTAGTGTTTAGGT
CAAACTCCGAGAAACGCTGACAATAGTAGAAAACCTTACCTTTGACCCCA
GATTTCTATTTCCATCCGCATGACCCAACAATTTACATCTGTCCTTACTC
CGACTAAATGATGTACTGCATAGAATTCAAAGACGGGCATAATGTGTCGT
TAGAGGTTTGCTTTCATGAGAGAAAATACCAAGTATTACAGTAATGAAGT
TACCGAATATTCACAGAGGACGATCCATGTGCTGATGGCACGGATAACTG
CCACGATGACGCTATTTGTACCAACACGGACAATGGGTTCACCTGTGCCT
GTAACGACGGTTATGGCGGGGACGGTCTCACTTGCACCGGTAAGGACAAA
GGATTTGTATGTGCAGAAGTAAATCATTACACTGTTACAGCACATTCATT
ACCTCCATTGACTTCTAATTCACAACGTTCACAATGTCTCACAAGTTTGT
TTAACATCAGTACCATCTATTGTTTGCATCTACAGATGTAGATGAATGTG
CAGCTGACACGGACAACTGCCACGCTGATGCCACCTGCACTAACACGCCT
GGCGCCTTCACCTGTGCCTGTTACCCCGGTTACTTGGGGAACGGAGTCAC
CTGTACTGGTAAGAATATCTGCTTGTACACACCACTTTTTATTAAGTAAA
ACGTTTTTCTGGTGGAGTAAGTCTGGTTTGAGTTCTTAGATTAGTTGTTG
GTGTTTGGTCTTGGACACTTATAAGGCATTGGCATAGAATTTATGAAAGA
TCTAACAATTATGGACGTATAAGATCGTTGAAATCTAATTTCAAGTGAAT
TTATATAGGAGAAGTTTATTGCAAGTTCATGCCCGTGGGCTAATTGCAAA
TACATGATAAAAACATAGGAAAAACATACATGCGTCAGTAAACTGTGTCT
GACTTTGCTGTAACAATAGGTTACTGGTACTATATACAATTGTTGGCTAT
ATCTAAATTAGCTGGGTTTGACTTCTTTTTTGGAAGCAGTGGAAGACGAA
AAGTCCCACTTTTTCTAGTATTTGTGGGTTCTGTGATTTCAAGAGAAAGG
TAGCTTTTTGTTCATCCGTGAATGTGCAAAAGTAGGGATATTTCGGGATA
ACTTGTTTAAATAATTCGGTTCTTTCGTCACTGTTGAATATACACTTGCA
AATAAAATGTGTTTCGTCTTCCACCGCCTTGGACGTACAGTATTTACAAA
TTCTTTGGCACACTGGTAAACTCTTAATAATATATAACAGTAGTGACAGT
CCGAAGGCCAGGTTAAAACATACGTTTTTAATCCGGAGTCAGCTCCGAGT
TAACACAGAAAATGCGTGTAGAATCCAAGCCAGAGTCTCGTTTGTTTTAG
GAATTTTTTATCGGTTTGTATCCACAGATGTAGATGAATGTGCAGTTGGA
ACGGGCATCTGCCACGCTGACGCCACCTGCACTACCACACCTGGCGCCTT
CACCTGTGCCTGTGACGCCGGTTACTACGGGGACGGATTCACCTGTACTG
GTAAGAATATCTGCTTGTACATACCACTTTTAAGTAAACCGTTTTTCTGG
TGAAGTAAGTCTGGTTTAAGTTCTTAGATGAGTTGTTGGTGTTTGGTCTC
GGACACTTATAAGGCATTGGCATAGAATTTATGAAAGATCTAACAATTAT
GGACGTATAAGATTGTCGAAATCTAATTTCAAGTGAATTTATATATTACA
GTAGTGACAGTCCGAAGGCTAGGTTAAAGCACACGTTTTTAATCCGGAGT
CAACTCCGAGTTAACACAGAAAATGTGTGTAGAATCCAAGCCAGAGTCTC
GTTTGTTTTTGTATTTTTTTAACTGTTTGTATCCACAGATGTAGATGAAT
GTGCAACTGGAACGGATAACTGCCACGCAAACGCCACCTGCACTAACACA
CCTGGCGCCTTCACCTGTGCCTGTAACGCCGGTTACGTTGGAGCTCGAGA
CGGAGTCACCTGTACTGGTAAGAACAAAGAATTAGATGTGCCTTATTTAG
TAAAACATTACAACGTTATCGTAGGTGCATTCATTGCATCCATTGAGTTA
CATTTCACAACGCGTTCACAAAGTATTATTGGTTTATTTATCACTGGTAA
CTTGTATTGCTTCTATCCTCAGATATCGATGAGTGTACGGAAGACTATGA
CAATTGCCACGATCAAGCAACTTGTACTAACGTAGTCGGCTCCTTCATTT
GTACCTGTAACGGCGGTTACAGCGGGGATGGAGTCAACTGTACTGGTAAG
AACAAAGAAGTTGGACGTACCTCATTAAAAAGTTCTTCGGCGTCTGTTGC
CCATTAGACAAAAGCTACAATTAGTCTACCTCCGTTTAATTCCACAGTGT
CTTGCTCCTTATGAGCAGCCTTAGTTTTGAGGGTTCCTTTGCTTTTATTG
TCTTGATATTTTCTATCAAGTTAGAATTTAATCCAACTCCAGTATTACAA
ATATCAGAGCAAAAGGCCTGAAGATGGGTTTAGAATGACAAACGGAGAAA
TATTTTGTAAGATGTTTGCTTTTAAAAGAAAAAAAAAGGACTAACCTCTT
GCGGTATGGTATTCCGCACTGATTGGTTTAATGCAATCATTTGAAATACA
CCGTTAGAAACCTGCAGCTGTATACACAATGTACCAGCTGCCCATATTGA
TAATTTTCGACAGCTTTATCGAAACAAGCTTAAGCAGCAAATTTTACAGC
CATTTCTCTTTGGCAAGGAAATGTTCTTTGGTAACGGAAGAGTTTATTAG
CGAAATGCACTTCTTAAATGATTTTATCAGACGTTTCGGAGTATTTGACT
TTCAATATAATTGAAAGCGTTTTTGACAAAACTTCTTGTATGTCATTGCA
GACGTAGACGAATGTGCCTCTCATCCCTGTGAAAATGGCGCAACTTGCAT
GGATGGGATCAACGGCTACACCTGTACTTGTGCTGCAGGCTATGTAGGAG
ATCATTGTGAAGAGCGCACACGTACGTTTTTCCATTATAACTGTATTTCC
GTACATCGAGATTCATTTCTTTATGCAACCATATCATATACTTTTCGGAC
CTCATGCCGAGTAATATACGGAGGGACTAAGAAGAGGGTACAGTCATGTA
GATATTTCAGAATGCATATTTTGCTGTATTTTTTTGCACTTTTTTTTACA
ATTTGTCAAGTTCATCATCGTTTCAGCTTGTAATATGTATTACATTAAGT
TGTCTTCATGTCTTCAAACATTCCAATATTGTGATTTCTCATTTTTTTTG
TAGGTTTGATTCCCTTTGACGGCAACTTAGGACCGATCATTGGTGGCTTG
AGCTTCAGGCGCAGAAGAGAAGCTACGAGTACTCACTGGAGTCGGGTAGG
TGATGTGACGAGCTTAGTCTACGACGCAGACAGTGGTGAAGAGGAGCAAC
TGGTGTCTTTTGCCGCTCCCAACTTGGAAGATCTTGGTGAGAACGACCAT
CTTCTAGGTGAGTACCTTTAGTCTGTAGAATTGTTTTGTATTGGTATATG
AATGGTTTGAACACCGAGCAGGAACAGAAGACGTTCTCAGTCAAAACTGA
AATTTTACATAGACACCCACATCATTAAACATGACAAGTCCGGAATACTC
ATTAGATCTGGCGTAAGTGGTAACTGTAAAGGATAACAAACCAAGCATCT
ATGTGCTTTAATGATAACCACTAATCTAGCCAACATACTACAATGTTTGA
TGTCCAATAACTTATCTAAGTCTCCTATATGGAGGGGGGATACATAAAGT
GACTGGTACACGTCTTTGGTCTTTGTATTTAGTATAAGCAAGCATATAAT
CTCCTTGATATAAGCGACTAGCTTAAGTCTTGGAATTTGAACTCATTCCG
TAGGTCCTCTTCAATACCTCACACAAGATGTCGAAGGTTTTCCTACAAAC
TACCCTGCTACCACCACCGAGGCGATGCCGTCCCTGGTAGAGGATTTCGA
TAACATGCTCGACAGCTTTAACTGTAGCAACAATGGTCCTAACTGTAACC
TGACGCGTGGACAGGACGATGTGGTAAAGTTAGACGATAACTGGTACATT
GTCTACAGGCCAGCGATTGAGTACGACCCCGGAAGCACGAAGAGAGGCAT
ACGTTTCAGGATTCTCATTGTTGCCTGGCGTGGCTTTAGAATCTTTATTC
GATGCTTCATATATTGAGGAAAGCAATTTACTCATTTATTGACGGTGATA
CACCTATACTTGTCACCGGTACACTTAAAATGAAATAATCTGGACCCTGG
GGCCAGAACCATAAAGTAGTTCAGGAAGTGCTTCCCACTGTGGCCTTGCT
GCAGTTTGAAAGGTATTCCATTGATGTATTTATAGGAATTTCTTACGGTT
AATAATGTTTATTTGGGGTTTTGAAAATATTTTCTTAGGGATGGATGTTA
ACTATTAGTCATTTGCTTATAATACAAGGATGAAAATATTTCTGATTGAG
TTTAGAATTACATACATTTATTTATGCCTTACTTTGGTAGTCTTTGATTC
TTTTTTTCAAACAAACCGTTAGCAAATAATGTCAAATGCTTTAATATAGA
ATAAAACATAGACAAACATGATCAAGCCGAGTTGTGTATTTCTTTGTTAC
TGAAATGATTAC Coding sequence (CDS) from alignment at Sc0000583:41444..46505+ >transcript:BL96491_cuf4 ID=transcript:BL96491_cuf4|Name=transcript:BL96491_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=690bp|location=Sequence derived from alignment at Sc0000583:41444..46505+ (Branchiostoma lanceolatum)
ATGCCGAGAAGGAGGGAGTTGGCATGGAGAGGATGTAACATGCACTGTGC
AGACGTAGACGAATGTGCCTCTCATCCCTGTGAAAATGGCGCAACTTGCA
TGGATGGGATCAACGGCTACACCTGTACTTGTGCTGCAGGCTATGTAGGA
GATCATTGTGAAGAGCGCACACGTTTGATTCCCTTTGACGGCAACTTAGG
ACCGATCATTGGTGGCTTGAGCTTCAGGCGCAGAAGAGAAGCTACGAGTA
CTCACTGGAGTCGGGTAGGTGATGTGACGAGCTTAGTCTACGACGCAGAC
AGTGGTGAAGAGGAGCAACTGGTGTCTTTTGCCGCTCCCAACTTGGAAGA
TCTTGGTGAGAACGACCATCTTCTAGGTCCTCTTCAATACCTCACACAAG
ATGTCGAAGGTTTTCCTACAAACTACCCTGCTACCACCACCGAGGCGATG
CCGTCCCTGGTAGAGGATTTCGATAACATGCTCGACAGCTTTAACTGTAG
CAACAATGGTCCTAACTGTAACCTGACGCGTGGACAGGACGATGTGGTAA
AGTTAGACGATAACTGGTACATTGTCTACAGGCCAGCGATTGAGTACGAC
CCCGGAAGCACGAAGAGAGGCATACGTTTCAGGATTCTCATTGTTGCCTG
GCGTGGCTTTAGAATCTTTATTCGATGCTTCATATATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000583 | genome | Sc0000583:41444..46505 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96491_cuf4 |
| Biotype | protein_coding |
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