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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96492_cuf9 >transcript:BL96492_cuf9-protein ID=transcript:BL96492_cuf9-protein|Name=transcript:BL96492_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=423bp
ERGSVFCDNPGPPYKIGTVCIHSCNETDLFFQKSGDESRTCQVGGTWGGD
DLVCADIESDPTVACAARTDPPEEERGSMFCTNSGPPYPIGTICINSCDI
GEGLFPESGDELRTCQGGSWDGDDLVCAAHGPNSTVACSERTDPPVAERG
TTMYCDNSGPPYPIGTVCTRSCDEAAGYFLNSGDEMRTCQGGAWDGAPLV
CAADCAARMDPPEAERGTIFCDNPGPPYPIGTVCAHSCDNLGGFFISSGD
SQRTCQVGGIWGGADLVCYVPPVRRRREVISTHWSRIGNVTSLVYDADSG
PNEQMVSFAAPSLETLGENDTLLGPLRNLTEDVEGFPDNYPDTTAEAMPT
LVQDFHNMIASLNCTDCDQIRGPNDVVKLDDQWYIIYRPAIEYNPGGMKR
GIRFRILVQAWRGFRIFIRCLIY Run BLAST on NCBI mRNA from alignment at Sc0000583:85554..89850+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96492_cuf9 ID=transcript:BL96492_cuf9|Name=transcript:BL96492_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=4297bp|location=Sequence derived from alignment at Sc0000583:85554..89850+ (Branchiostoma lanceolatum)
GGAAAGGGGAAGCGTGTTCTGTGATAATCCAGGTCCGCCATACAAAATCG
GCACAGTCTGCATCCACTCCTGCAATGAGACGGACCTTTTTTTCCAAAAG
TCTGGGGACGAGTCCAGGACGTGCCAAGTAGGTGGGACATGGGGAGGAGA
TGATCTAGTGTGCGCTGGTAAGTGTTGAAAACAGTACAGGTGACACTTCA
TTGAAGCAGAGGGGCTTGCACGGGCTCTCTTTTCCTTGATTTTTATTTGC
AGACGACAACGTCGTATTTAGATGAATTTGAACCCTATTTCATGATAAAA
CATATTTCATGATAAACGGTGCTTTGATATACGTTGCAGCTAAGTCAGTC
TTTTGTCAACCATTTAACTTATTTGATATTTGGGCAATCATCCTTTGTAC
ACTTAAAGCCGGGAACATGAACTATCTTTCGGATTCTCTTCCTTTAAAAG
AAGTCCTGATGGAGTACACATTAGATATGATTTCATAACATCAGAGAAAA
TGTTCCTACTAATGTTGATTGGATGAATTACGTCAACAATTCTGCATTTT
TATATATGTGAAGGTCTTTTTTATGGCATAAGTTAAAGCATGATGTAAAT
ATTGTTATAGGCTGATTATATCTTGATTTTACGAGCAGGAAAAATGATGA
GAAATGAATACAGAGATGCACATCATATAGTTGCACTCCGATCAATACAT
TACATTGGCAGTCACCCTTGTTTTCTCTAACTTCTTTTTACAGATATTGA
GTCAGACCCAACAGGTAAGTTTGCTCATTTTCCTAAATCATCTTATTGGG
AATTATGCTGTTGTAGTACATATGTATACAAAATACATTATCAAAAGCTA
AACTAAACCCAGACTTACAGATTTGTGTTAGGTACATGCTTGAAAAAAAT
GATATAATAAATAAATGAAACACAAAATAGTAACTATGTATTTCACCGCC
TTGCTATATTCTGCTTTCAGTATCCATAATGCAGCAAGATAAAGTGCAAG
ATAAAGTGCAATTATTCATTGTTGTGGGCCGGTTCAAATGATGATTGAAA
ATGTTAGTCTGCTCTGTTGACATGCCCTTCTGTTGTCAACCATTTATTCT
GTTGACATGCCCTTCTGTTGTCAACCATTTATTCTGTTGACATGCCCTTC
TGTTGTCAACCATTTATTCTGTTGACATGCCCTTTTGGTGACCCTCATTC
ATTCATTAAGCCGATACAGAATTACGCTGTTTTATCAACCAACTCATTTC
ATTCATATTTACAGTGGCCTGCGCTGCAAGAACTGACCCACCAGAAGAGG
AAAGGGGGAGTATGTTCTGTACTAACTCAGGTCCGCCATACCCGATCGGC
ACAATCTGCATCAACTCGTGCGATATCGGGGAAGGTCTTTTCCCCGAGTC
TGGGGACGAGCTCAGGACGTGCCAAGGAGGGTCATGGGATGGAGATGATC
TAGTGTGTGCTGGTAAGTATTAGAACAGCTAGTACAGATGACACGTCATT
GCAGTACAATGACTTGCATTGCCTTTCTTTTATTTCTATTTTGAGTTGTC
GATAGTGACGTCTTATTCGAATTTGAAATCTATGTATTTCCTTTCAGTCT
GGACGGCATGTCATGATATTACATTACTTTAAAGGCATGATTTATGGACA
ACCATCCTTTGTACACTTCAAAGTTGGAACTTGAATTATCTTTCGAGGTC
TCTTTTTCCAAATGTCTTAAGTGCATGTATATATTAGATATTGCATTTTT
TAATGGTGCCTTCTCATCTTCTTGGCGAAGGTAAACATTGAAAAAGAAGG
TGATGACAATATTGTCAATGATTTCCTGAACTGGGAAAATGCTGGGAAAA
GGATGCAGAGATGTACTGCCAATAGCACTCCTACGAATTGCAATATATTA
CATCGACACTCACGCTTGTTTTGTACAACTTCTTTTTACAGCGCATGGTC
CAAACTCAACAGGTAAGTTTGTTCATTTTCCTAGATTATCTTAATTAACC
AAAAGCCGTTTCTTATACAAATATTCGTATTTAGGTCTTTCCTGTCTTGG
AACAAATGTATATACCGTAGCTTTTCAATGGTCAGTCGTCTTGCATTAAA
GGCATTAAATTCGTTTTAAGACCAGGAGTTGTAGGACACAGAATGAAGGA
TCAATAGTCCGATCTGTTGTCACGCTGTTTTATTCAGCAATTGATTGATT
TCATCCTACTGTACAGTGGCCTGCTCTGAGAGGACTGACCCACCAGTAGC
CGAAAGGGGCACCACCATGTACTGTGATAACTCAGGCCCGCCGTACCCAA
TCGGCACAGTCTGCACCCGGTCGTGTGACGAGGCGGCAGGTTATTTCCTC
AACTCTGGGGACGAGATGAGGACGTGCCAAGGAGGGGCATGGGATGGAGC
CCCTCTAGTGTGCGCTGGTAAGTGTGGAGAAGAGAACGGATAACACGTTA
TTGTAGTACAACTATTTGTATATTATTAATAACCTACGTTAAGAGCGTGC
ACGATTCTTATGATATATCATATAAGTTAATGCATTCATTACGCCGACAC
ATAATTACAACACGCTATTTTATTCAGCAACTGATCGATTTCACCCAACT
GTATAGCGGACTGTGCTGCCAGGATGGACCCACCGGAAGCCGAAAGGGGC
ACCATCTTTTGTGACAACCCAGGTCCGCCGTACCCAATTGGCACAGTCTG
CGCCCACTCATGCGATAACCTGGGAGGGTTTTTCATCTCGTCTGGTGACT
CGCAGAGGACATGCCAAGTAGGAGGGATATGGGGTGGAGCGGATCTGGTG
TGCTATGTGCCTCGTAAGTGTTACATTTACAAACAGTATAGGTGGCTCGT
CTGTTATGTGTCTTCTCCTCTTCCTGCCATCTTCTCAAATGGATTTAATT
TTCTTTGTCTATTTTGAGGCTAATTGACGGCGGATGGGTAGAGAGGGAAA
ATGTCTCAAGACAACTGTTCTTAGCATAGAACCGCATAGGAAAAAATGGC
AATACGGAACTCATACGGACTTGATATACGTATACGCACAAGTGTGCCCC
CCCCCCCCCAAACTTTTAATGCGCAACTTTAAAGCTTGTAAGGAATCAGG
ATGCACAGTAGTGTGTCAGAGCCCTAATGTCACGCATCGGCGTATATATT
TTGAAAGGTATATTATGTTAGACTTTTGCCGTTTATAAGCACTTGAAGTT
AAAGACCGAGTACATAAGCCTTTTGCTTGCCATAAAACGTTTCAACGTTG
GAATGTCACACTTTTTATTGTATCTTTTGTAGCAGTCAGGCGAAGACGAG
AAGTTATTAGTACTCATTGGAGTCGGATAGGGAATGTGACGAGCTTAGTC
TACGACGCGGACAGTGGTCCAAATGAGCAAATGGTGTCTTTTGCCGCCCC
ATCCTTGGAAACTCTTGGTGAAAACGACACTCTTTTAGGTGAGTATCTTA
AGTCTGTAGGATTGTTTTTGATAAATAAATGGTTTGAAAAGGTAGCTACT
CAGAACAGAACACTTTCTCAGTAAACAATGTTATTTTTACATCATTATGC
ACCTCCTCATGAAACCATAAAAACATAAATGACCATCAGATCTTGCGTAA
ATCAAAACTATAGGAAAGATAGCAAATAAAGCCTTTAGGTAGTACTTAAA
TGATAACCACTAGTCTAGCCAACATACTACAATGCCTGCTGACTCATATT
TCCGCATCTTTAAAAGTCTCCTAAATGAGGGGAGAAAAATGCATATTGTG
ACCGGCCTTGTCCATTTAGCATACATGTAAGCGACTAGCTCAACGTGTTG
AAATTCGAATTCATTCCGTAGGTCCACTTCGAAACCTTACAGAAGATGTC
GAAGGGTTTCCTGATAACTACCCTGACACCACCGCCGAGGCGATGCCGAC
CCTGGTGCAGGATTTCCATAACATGATCGCCAGCTTAAACTGCACTGATT
GTGATCAGATTCGTGGACCAAACGATGTGGTGAAGTTAGACGATCAGTGG
TACATCATTTACAGGCCAGCGATTGAGTACAACCCTGGAGGCATGAAGAG
AGGCATACGTTTCAGGATTCTCGTCCAGGCCTGGCGTGGCTTTAGAATCT
TTATTCGATGCTTAATATATTGAGAAAAGCAATTACCAATTCATTTGTTA
ATGATGATACACCTTGACTTGTCACCCGTACGCTTAATTGGAATGTTTTA
TTGTTAGCTAAAGGTATTCGAATCATTTTGTGCAAATACCTTGAATTTTT
AAAGCAGATAGAGATGTCCGTTCATATACTCTACAGGCCGTATCTAA Coding sequence (CDS) from alignment at Sc0000583:85554..89850+ >transcript:BL96492_cuf9 ID=transcript:BL96492_cuf9|Name=transcript:BL96492_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=1272bp|location=Sequence derived from alignment at Sc0000583:85554..89850+ (Branchiostoma lanceolatum)
GAAAGGGGAAGCGTGTTCTGTGATAATCCAGGTCCGCCATACAAAATCGG
CACAGTCTGCATCCACTCCTGCAATGAGACGGACCTTTTTTTCCAAAAGT
CTGGGGACGAGTCCAGGACGTGCCAAGTAGGTGGGACATGGGGAGGAGAT
GATCTAGTGTGCGCTGATATTGAGTCAGACCCAACAGTGGCCTGCGCTGC
AAGAACTGACCCACCAGAAGAGGAAAGGGGGAGTATGTTCTGTACTAACT
CAGGTCCGCCATACCCGATCGGCACAATCTGCATCAACTCGTGCGATATC
GGGGAAGGTCTTTTCCCCGAGTCTGGGGACGAGCTCAGGACGTGCCAAGG
AGGGTCATGGGATGGAGATGATCTAGTGTGTGCTGCGCATGGTCCAAACT
CAACAGTGGCCTGCTCTGAGAGGACTGACCCACCAGTAGCCGAAAGGGGC
ACCACCATGTACTGTGATAACTCAGGCCCGCCGTACCCAATCGGCACAGT
CTGCACCCGGTCGTGTGACGAGGCGGCAGGTTATTTCCTCAACTCTGGGG
ACGAGATGAGGACGTGCCAAGGAGGGGCATGGGATGGAGCCCCTCTAGTG
TGCGCTGCGGACTGTGCTGCCAGGATGGACCCACCGGAAGCCGAAAGGGG
CACCATCTTTTGTGACAACCCAGGTCCGCCGTACCCAATTGGCACAGTCT
GCGCCCACTCATGCGATAACCTGGGAGGGTTTTTCATCTCGTCTGGTGAC
TCGCAGAGGACATGCCAAGTAGGAGGGATATGGGGTGGAGCGGATCTGGT
GTGCTATGTGCCTCCAGTCAGGCGAAGACGAGAAGTTATTAGTACTCATT
GGAGTCGGATAGGGAATGTGACGAGCTTAGTCTACGACGCGGACAGTGGT
CCAAATGAGCAAATGGTGTCTTTTGCCGCCCCATCCTTGGAAACTCTTGG
TGAAAACGACACTCTTTTAGGTCCACTTCGAAACCTTACAGAAGATGTCG
AAGGGTTTCCTGATAACTACCCTGACACCACCGCCGAGGCGATGCCGACC
CTGGTGCAGGATTTCCATAACATGATCGCCAGCTTAAACTGCACTGATTG
TGATCAGATTCGTGGACCAAACGATGTGGTGAAGTTAGACGATCAGTGGT
ACATCATTTACAGGCCAGCGATTGAGTACAACCCTGGAGGCATGAAGAGA
GGCATACGTTTCAGGATTCTCGTCCAGGCCTGGCGTGGCTTTAGAATCTT
TATTCGATGCTTAATATATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000583 | genome | Sc0000583:85554..89850 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96492_cuf9 |
| Biotype | protein_coding |
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