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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96493_cuf0 >transcript:BL96493_cuf0-protein ID=transcript:BL96493_cuf0-protein|Name=transcript:BL96493_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=338bp
MEQPYKREDKTESCQNMADKVFNNMRCLVGLMVVLVSIGTTHAQGCQDGW
TEYRNACFKLFPQTGAMSSANSVCTSFGGYIVRPKTQGIQALIQGMMLDH
PEADYWLHMIRSPHITGGWTYLDGTWLIDCDFTNWGPASDGESSSNDGAN
TEQCGRLLAATQWQWEDTPCGDSHSTICQTGDVIGTSSGSCGSEFANNMP
CSFGYTAGPGDICYKVSATVATFADAEADCASQGARLAAPYDERTHQFMA
GMAMLVNPNSDHWIGITTDTVNGGFKFIDDTQLPQCGFMKWAAGQPDTSM
SGGYLDSAAAYNWAAGDPSIEKHYICQKAGNPYTCERG Run BLAST on NCBI mRNA from alignment at Sc0000063:912135..918991+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96493_cuf0 ID=transcript:BL96493_cuf0|Name=transcript:BL96493_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6857bp|location=Sequence derived from alignment at Sc0000063:912135..918991+ (Branchiostoma lanceolatum)
CAGACCGTTGCTGTGTGAGATAATGGCAAGGCGTTGCTAGGAGAAATTCC
TGCGTTAGTAACGTAAACATGTTTCACAGAATCGCATCACACGACCTTAA
TTTTACCTTCGCTACAAAGGAAAAATAACTTGGTTGACCACCACACACGG
TGTTAATGAAAAACAGCTAGTTAGTTTAGTTTGAATCACTGGTTATGGTC
TGTTGTTTCGTCACCACGTATCTTTACCAGAGACTACACAGTTGGTTAAT
TGTTCAGCCCCCACAAACAGTGCTGTCATTTTCTAAAGCACAGCAAGAAA
AACATTGATAGACGAGTCTGCGAGCTCTAAACGACATTTTCGGCAGTGAT
GGCCTGGTGTTCTCTTGATCATCGCNTCATGTTCTAAAGCACAGCACGAA
AAACATTGATAGACGAGTCTGCGAGCTCTAAACGACCTTTTCGGTAGTGA
TGGCCCGGTGTTCTCTTGATCATCGCGCGATGTTTAGGGATCGGCCGATT
TTTCGGGATCGGCCGATGTTCAACACTGAGCTCCGTTTTATAGATACGAT
ACTTGATAGGTTAGATTTTCAGTCGAAACATACACGTGACCCTCTGTCGA
TTTTAGAATTGGGTGATCTTCTGGTGATCAACAAATACGACAGAAGCTCG
TCGAATGTGTGACAGGGGATTAAAAGCAAGTAGAGACGACCTGTCAAGGG
TTCGACAGCGCCTTAGACTCCATTCTAAGTAACTCGCCAAAGCCTGCACT
TTGTGTGCTGTGTATGTTGAGCCAAACGTCACTTGCCCAACCGCTGTCGG
GTCAGGCTGCCTACGACGTAGATTTGTCCGAGGCTCCTCAGGTCACTGGG
AGTTCCACAGTACTACAGAAGAGAACAATTGATCCCACTAACAAACTATG
AACACAAAACAAGCGATGATTAAGCAAACTACCTCTGTCAATTCAATTGC
CCGGTGTAAACTGTTTCATTAGTGGCACGACTTTACTTTATTACGTCTTT
TGTCCCCAGGAAGTCCCGGATCAGTGCTTCATTACCGGTTCAATCCGCCC
TAATAGTTGTTGACAAATGCAATCAGGACGTGTTGTTTGGCAGAATGCTG
GTGTTGCTGTTGACTTCACTGTAGGTTTCTGTGGAGCGTGAGCAATCTCC
AGGCAGATGTTGGAAGGCAAAATTGTAACGTCCAAAGGAAGGCCGTTTAG
GCCATTTTGGTTCGAAATGGATGACATTCTCTGGGAACCCCAAAACTGAT
GCGAGCGTGCCCATAACAGAAGTCTGACAAAAAAAGTTGCTTTCATTATG
AAATCTACGTGGTCAGGAAGGTTGAACAAATGACTAAAGACACAGAGAAT
GGCATACCGAATAACATCTTCTTCATTTTCATTATTTCACATCTTCTTCT
TTGACTTTACATTCTACGACATTAGCATCGCTTTATTCTTTTGCAATTTA
CGGTATATGTTTCTTCATTTTTCAGCCGCTTTGTTTGATTAACAGTAGGG
TAGAATTTTTTTTTGAAAGGGACGAAAAATGAGGCGCGCGCAGATGTCAT
CCATATAATCGACTCAACATGACCTTATTAGGAAGGCAGTTTGTAGCAAA
AACGGTGAGCTAGAAAAGCGTTACGTTTTTGCCTTTCAGCATCTGCTAGG
GTTAGGTCTTGGATAAAGTCCGGTGGCATTATTGCCCCGTACTGTATCAA
CATATGAATCTGCGTCGAGACATTTTTTTGCTGACGTAACATTTATTCTA
GTCCAGTTCAAACGAAGCCATCATCACCATCAGTATTTGTACAGGACGTT
TACTGTGTCAGATTAGAACGGAGAGTCGTTTGACATCACTCACTCATTTA
CACGCACTATCCGGCGTACCCGGCGCAGCTGGGCGTTCCAAAGACGTCGC
GGCCTGATTGGAGACCGCCCGAGGCCACTGCGCTGTGGGTTGATTGTTAC
CACCTTCAGAGAATACATTGATTCGATGGTCACTAACATCGTTATTGAGT
CATTCTTTTTTGTTGATTAAGTTAATTAAACAGCACAAACAACCTGTGTT
ACCATGGAGCAACCTTATAAACGCGAAGACAAGACGGAGAGTTGTCAAAA
CATGGCGGACAAGGTCTTCAACAATATGCGCTGTTTGGTTGGTCTAATGG
TTGTTTTAGTGAGCATTGGTGAGACATTCATTTCTGTTCCATTGATACTA
TTTTGTCTTTCCATTCAGATGGTCATGTTGCTGGAGAATTGTTTCAGTCC
AGTGGATTGAGTAGATCCTATCCACGCTGATGTGTTGACACTACAGTCAC
ATTCACGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGA
GTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGTGTTTGTGTCTATGTGT
GTCTAGGTATCCGTGTGTGTAAGCTTTGTGTCACATGTGTCCTCCCTCTT
CAGGGACGACACACGCACAGGGCTGTCAGGATGGGTGGACCGAGTACCGA
AATGCCTGCTTCAAACTTTTCCCACAGACAGGGGCCATGAGTTCAGCAAA
TGTGAGTAGATCTTCACACGGTGTTTTCATACGAATTTATAATTATTAGC
TGTATCGTTTCAGGTATCCGCTATCTGTTTTGCTTATTCTTTGGGTTGTA
ACGCTGGGTTGTTTGACTTTACCCTCAAACAAGTTTATGCGTATATTCAT
GTGCGCATGAGCTGCGTATTTTTTGCTGTAGTCAAAATTTGCGGGGGAAA
AGCTGTTTTCTACTCTAACGCACCTTTGTGCAGCCTGGTTATCGAACAAA
CGAAATTAATTTTTCGGCCGCAAACTTTACCTCAACCCAAAGCGCATTAA
TACGCAACTCAGGGGGACTTGTATATACGGACAAGTGTGTGGGGGCCTTT
AGTAAGTCATCCCAGATGGATGATCCTTACTCCAACACATCTCCATAAGA
ATGCTAGTAACAGAATAAAATACTTGCAGTTAAAAAGCACTCTGTATGTA
TTGTCCACTCATGATAGCCGTGCGCCCAGGTTCCAGGCCCTTGGAAATTG
TTGTGGTCCTCGTTCGAAAGCGTAAAGCATTGGGGCCTCGTTCCCAATGT
CGAGGGGAAGCCTTGTGGTTAACATCTACTAACAAAATGCAACCAGGGTA
CATAATTCCGCCACCCTGAAAAGATACGTCCAAACAGATCTCCAATCCAA
CGTCCCCCATAATGCACTCCTGTTTATCTTAACTGTGTATACCTGGAGAT
GCTGCACTAGAGATCTTTCAAACCCACTGTTTTTCAAAGTGGCGGATTTA
TGTGACCTGGCGGATTAATGTTAATGGAGGTGGCGCACGCACCTATCCCT
GTGGGCCGGGGGGGTTTCCTAATGTCGGTTGTTGAATGTCTTGCAACACC
CTACCACCACCCCCTTCCCCTGCAGTCTGTCTGCACTAGTTTCGGAGGTT
ATATCGTGAGGCCGAAGACTCAGGGCATCCAGGCACTGATCCAGGGCATG
ATGCTGGATCACCCTGAAGCGGACTACTGGCTCCACATGATCCGCTCACC
TCACATCACGGGCGGCTGGACCTACCTAGATGGAACATGGTAAGACTGGA
TCACGAATCTGCTTCATTTCATGCATTTAGTATATGGCACTATATCTGTA
TAATAGTATATAGCTAACATGTAGTTCAGCAAAATGTCATTGTGACAGCC
GACGATAAGATATAACTGTCTTATCAAATATTTCCTCCTCTCCCCTACCC
ACTAGCCTGAGTGTCATCCTGTTTCAGTTCCAGGCTCTGAAGGTAGAGCC
TGGAACTGAAACAGGATGACACTCAGGCTACCTACCCACAGCAACTATAT
ATATGCCCAACATGCATCTAACATGTAGTTCAGCGAAATTTCACTATGAC
AGCTGCCCACAAGATGTGACTGACGTATCAAAAATGTTCCCCTTTCCTCC
TACACACGTACAACTACGTCACATCTCCATGGAAACGCAGGTTGATTGAC
TGTGACTTCACAAACTAGAGACCAACCGCCCACGGGATGTAACTGTCGTA
ACAAAAATGTCCTCCTCTCCCCTGCCCACAGTAACTACATATACATCTAG
CATGTAGTTAGCGAAATTTCACAATGACAGACAACAACATGTCTGACATG
ATGTAACTGTCGTATCAATGATATTCCTCTCTCCCCCTGCCAACAACAAC
TGCGTCACATATCCATGGCAACAGGTTGATTGACTGTGACTTCACAAACT
GGGGACCGGCCTCTGATGGGGAGTCAAGTTCAAACGACGGAGCGAACACT
GAGCAATGTGGCAGGCTGTTGGCGGCTACCCAATGGCAATGGGAGGATAC
GCCATGTGGCGATTCCCACAGCACCATTTGCCAGACAGGTAGGGTAACAA
TATATAAGTCCAAATTTTCTCACTGATTTCGTGACTATGAAGTAGAGAAT
ATAGCTGACAGGTTGAAGAACCCTTAGTTTCATACTCTTGTCCGGATTCT
TTACCTACTTTAAGAAACAGAGCTAAACCAAGGAGGTCTAACTGAGAAAC
CTTCTTGGTGCTGTCGGACCATTCCGTGTCGTCACTAACGGGACACATGT
GTACATTTTCAGGTGACGTTATCGGTACCTCAAGTGGAAGCTGTGGAAGC
GGTGAGTTCACATTCTGTCATAACACTTAACTTACAATTGTCTGCATTAT
TCCGTTATTACCTGTTGCCTTAGGTGTAACAGAGCGATTCTGACTGAAGC
GTATTAGAAAAACGCACCATTCACATTGACATTCTACCTACTCTCAAGTC
TTCTTCATGAATTTTCTATTTCATGTTCTCTTGAAATACGTCTTTTATTC
AGCATTATATGGTTAGAACTAAAACGTTTAGAAGGCAGAATCTGATAATG
GTTGATTTTAGCCTGGGCACCATCCTCTGAAGTTTACTGCTGGGTTATTA
TTTTCGCTGCTAACCACGGTGGCTAGCAAGCGAAAAAAGGATAAACTTCA
ACTTCAACTTGATATACCCCCAGATAACCCCGCGAGGGGCAAAGTAGGGG
GGGGGGGAGGAGGTCCCAGGCTAAGGCGGGCAGGCCCCCAAACAAGCGGT
AAACTAAGGAGGATGGTACCCAGGCTAAGTACCTCCAAGCAGAGGAATGG
CTTCGGCTGGTTTTTGACGTGTTTTTAGGCGTTTTTGTTGTCTTACATAT
AGTATGGCTTAGCGACCGGGACAAAATCGAAAGCCAGACAAAAACGCCTA
ATACACGTCAAAAACCAGCAGGAGCCATTCCTCTGCTTGGAGAGTAAAGT
TGCTGTACTTACTTCAATAGAGTTTGCGAACAACATGCCCTGTTCCTTCG
GGTACACGGCGGGGCCGGGGGATATCTGCTACAAGGTGTCGGCGACAGTC
GCGACTTTCGCGGACGCAGAGGCGGACTGTGCGTCCCAGGGAGCCAGGCT
GGCCGCTCCGTACGACGAGAGGACCCACCAGTTCATGGCGGGGATGGCCA
TGCTGGTCAACCCCAACTCCGACCACTGGATCGGCATCACTACCGACACC
GTCAATGGAGGATTCAAGTTTATAGACGATACACAGTAAGGTTTCATGTC
ATAGCTAACAAACACTCAACAGACAATTTCCCAGTACACATTCTTGTGTG
ACTGCTGTCAGGGTTGACTCTTGACTCCACATAGCGCTACTGTAGGATCC
TGTAGCATTCAGAACTAGATGCCTTTCTCGAACAAAATATCCGACGCTTT
GTGTTGACTCAATTGCTCTTCTCATATACATAAATTCATATTCAAGCCAA
TACAATCGTATCCAGTGACAACTTTGTTCAACTGTTCAATAAAGTGGGAC
GGTGGGTACTAGCGCTACTTCGCCTTAATCCGTGGGGTAACCTATAGATA
TTCGTTTTTGTTTTAAAACGGGGTATCTGGGGATGTACGCTAAATGCAAC
ATCAGTAATACCGCTTGAATTGCGAACTTGAGAGACTTTAAGTAACTGTG
AAAAGTGTTCAGAACACTATCAGGTGTGCTGGATTTCCAGCTGTTCCCTC
TTATCAAGACAAGAGCACGGAGATCAGCGTGAAGGCAGCTTCGATATCTA
TTATCTATGCATTCGAAGACGGCGGTCAAAAAACTTCCTTCCCTCATTTC
AACATTTGACCCAATCATAGGAAAATTGTACTTTGTTATATTTCTGCCTT
TCTCTCTCACCAGGCTGCCGCAGTGCGGGTTCATGAAGTGGGCGGCTGGC
CAGCCAGACACGTCCATGTCAGGCGGGTACCTGGACTCCGCCGCGGCTTA
CAACTGGGCTGCCGGGGACCCCAGCATAGAGAAACACTACATATGTCAGA
AGGCCGGCGGTAAGGGCTGTTCAAAACATCGGTGGTATGACACACGGGAC
GGAGCACATAACATGATAGACGGTGGTGGTGGGTCCTCTGTCTTGCCTGA
TGGCACAAAGGACAGCAAAGTTCCATTCCGACTGACGGCGATCGCGCTGC
GACCTCGCTGCGCCGCGCTCCAAATTAGATTTATGAAACCCTTGACTTCA
TACTTGTAATGTCATGCAAAATGTAAAAGTACGACTGAAAAGACAACAAA
ACACAAAGCGTAAAATGGATATTTTTTATCAATGAAATTCGTTGAGCACT
AGAGTATTATCGCTTGGTCTTTTCGCTTGGTCTTTCTTCATTCCCGTTTG
TTAACCATGCGCAGTTTGGCGACTGAAAGTTATAGTGTTACAATCGCCAG
GATACGTATTAAGGATTTCCTATCACCGTCTTGTAATGAGAAATCGTTTT
TAACACTTTTTCTCTCTTTTCACCCCTCCAGGAAATCCTTACACCTGCGA
AAGAGGT Coding sequence (CDS) from alignment at Sc0000063:912135..918991+ >transcript:BL96493_cuf0 ID=transcript:BL96493_cuf0|Name=transcript:BL96493_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1014bp|location=Sequence derived from alignment at Sc0000063:912135..918991+ (Branchiostoma lanceolatum)
ATGGAGCAACCTTATAAACGCGAAGACAAGACGGAGAGTTGTCAAAACAT
GGCGGACAAGGTCTTCAACAATATGCGCTGTTTGGTTGGTCTAATGGTTG
TTTTAGTGAGCATTGGGACGACACACGCACAGGGCTGTCAGGATGGGTGG
ACCGAGTACCGAAATGCCTGCTTCAAACTTTTCCCACAGACAGGGGCCAT
GAGTTCAGCAAATTCTGTCTGCACTAGTTTCGGAGGTTATATCGTGAGGC
CGAAGACTCAGGGCATCCAGGCACTGATCCAGGGCATGATGCTGGATCAC
CCTGAAGCGGACTACTGGCTCCACATGATCCGCTCACCTCACATCACGGG
CGGCTGGACCTACCTAGATGGAACATGGTTGATTGACTGTGACTTCACAA
ACTGGGGACCGGCCTCTGATGGGGAGTCAAGTTCAAACGACGGAGCGAAC
ACTGAGCAATGTGGCAGGCTGTTGGCGGCTACCCAATGGCAATGGGAGGA
TACGCCATGTGGCGATTCCCACAGCACCATTTGCCAGACAGGTGACGTTA
TCGGTACCTCAAGTGGAAGCTGTGGAAGCGAGTTTGCGAACAACATGCCC
TGTTCCTTCGGGTACACGGCGGGGCCGGGGGATATCTGCTACAAGGTGTC
GGCGACAGTCGCGACTTTCGCGGACGCAGAGGCGGACTGTGCGTCCCAGG
GAGCCAGGCTGGCCGCTCCGTACGACGAGAGGACCCACCAGTTCATGGCG
GGGATGGCCATGCTGGTCAACCCCAACTCCGACCACTGGATCGGCATCAC
TACCGACACCGTCAATGGAGGATTCAAGTTTATAGACGATACACAGCTGC
CGCAGTGCGGGTTCATGAAGTGGGCGGCTGGCCAGCCAGACACGTCCATG
TCAGGCGGGTACCTGGACTCCGCCGCGGCTTACAACTGGGCTGCCGGGGA
CCCCAGCATAGAGAAACACTACATATGTCAGAAGGCCGGAAATCCTTACA
CCTGCGAAAGAGGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000063 | genome | Sc0000063:912135..918991 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96493_cuf0 |
| Biotype | protein_coding |
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