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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96500_cuf1 >transcript:BL96500_cuf1-protein ID=transcript:BL96500_cuf1-protein|Name=transcript:BL96500_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=301bp
RTLTLCEVQVFSGSVSIPTGYTERAGSFYKVFRTWKDHTSAQQTCEADGG
HLVVIKTASVNTFLMTLISDAEDYWIGLSDYTIGGTWMWSDGTRRDMSCD
FTNWAPGEPTNGGLSGGQDCVHLWGLLGHKWDDDYCYRGKYFICQIGPRE
ESSCPEETCGLSSFRHVPQTDCGGVPDDIDGHVRVTLQFCADACCADSTC
LSFQFNSVSTCILKRKLCSADKQVSTTGNMYDGLHVQESCQVGNGASYRG
TLSETATGKTCQRWDSQTPHQHDRTAANYPSGGLEQNYCRNPDGWFGLWC
F Run BLAST on NCBI mRNA from alignment at Sc0000017:1561808..1566042+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96500_cuf1 ID=transcript:BL96500_cuf1|Name=transcript:BL96500_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4235bp|location=Sequence derived from alignment at Sc0000017:1561808..1566042+ (Branchiostoma lanceolatum)
CGAACACTGACCCTGTGTGAGGTCCAAGTCTTTTCAGGTGGGGTTTAACA
ATGTTTATTATTAAATCATTCAGTTGTTAGAATCAATAGTCAAAACTATC
TTAATGTGTTTGCGGCCTTCTTCATGAATGCCGATCCACTCTGCGTGACT
CTAACTCTATAAGAGACTAAACTCTAGATTGTGGGAATCTTGAGTGTCAT
ATAAATTTTTAGGCATCTTTTGACTAACCACTAAAGTCAAGTGTGAGTGA
GTCAGTATATTCATGAAGAAGGCCGAAAATGCAATAAGTGCTCTTTTTCC
TTGATGATCATAAGATATCTTAAACTTTTATCATGTTAGTCTTCCGAGAC
TGGACTGCCAAAGGATGGAGGAGGATGGAAGGATATTATGTTACAAATTA
TTTCAACACAGATACATTTTCATTTTGCTTTTCACTTACCGTCTTGTTGA
ATAACCGTCTTGTTGAATGGAGTCGCTGATTTCTACCGTTATCCTTTGTA
GGATCTGTCAGCATTCCCACTGGGTACACAGAACGAGCGGGGTCCTTCTA
TAAAGTCTTCCGGACCTGGAAGGACCACACCAGTGCACAACAGACGTGTG
AAGCAGACGGGGGACATTTGGTTGTTATCAAGACAGCGTCTGTCAACACT
TTCCTCATGACCTTGATTTCGGACGCGGAGGACTACTGGATAGGGCTTAG
TGATTACACAGTGAGTGTCTACTCACTTTATTCGGTGTCTCCATGAAAAC
AGAGTGATTGTTTTCGGTGTTTGTTTGTTTGTGGCGGTGTCTGTTTGTAG
CTACTTAACCTTCTCCCTGCTGCCTAACTCTGTAACCAGTAGGGAATTGT
CAGTTCGTCAGTGTATTGCTTTGTTGTTGTTGTGCCTGTTATTAGTGTCT
ACTGTGGAAACATGACATTTGTTTAAGCATGGATTCAACTTTCTCTGAGC
CGTGATGTTGGAACGTTAACCCTCATACACCCGACCGGGGTCATTTTTGA
CCCCAGGCGTGGATTTTGATGTGCCATTTGAATTTTTTTGTTTGGAAAAA
AACTTCCCAAAACACCCGTTGCCATGGCAACACGAAAAAACTATGAACTT
ACTTTATTTATTTGAATATTTTGTTAAGGACATTTTATGAAAATTCACCA
AGTTTGGTGGCTATGGCGTAAGCCGTTAAGGAGTAATGCAATATAAAATT
TGGCGTGGGCCTCAAAAATCCTCTACCGGTCTAAATAGGAATAGTTCAAA
ACGTGGTCCTTCTGATCTTTTTGGATAAATCATCATAATGAACTGGAATC
ATTCATACCTAAACCAGCCAAAACATTCCTCTTACATTGATGAAGCAATT
TTCGGATAACAATCGGCGAAAAAAGTAAAAAGGGAGATTTTACTGAATAA
AACATTTTGGGGTCATTTCTGACCCAGTTCAGTCATTTTAGTCGCAACAA
AGGGTTCGTGTGTATGAGGGTTAATACCTTTCGAAAAGCATTTAGATTAT
CCATTCTATACAAACAGTTTCCGGCAGGTATTGGTAACCTTTTTAAAAAT
CATGATTTTCTACATTTTCAGATTGGAGGCACTTGGATGTGGTCTGATGG
TACCAGACGGGACATGAGTTGTGACTTCACCAACTGGGCACCGGGTGAAC
CAACTAATGGTGGCCTATCTGGTGGCCAGGACTGCGTTCATCTGTGGGGA
CTACTTGGCCACAAGTGGGATGACGACTACTGCTATAGAGGGAAATATTT
CATCTGTCAAATCGGTATGTTAATATTATCAATAACAAATTGGGGAAAGA
TCTTGTATAAATACACTATTTTTAGCATTAGTAGTTTATGGGGTCGTGTG
GCGCAACGGCAAAGCGTTCGGCTCAGAACCAAGAGGTCCCGAGTTCGAAT
CCTGTCACCGATCTTGTGCTCTTGGGAAAGGCACTTTACACGACTTTCCT
CACTCCACCCAGGTGTAAATGGGTACCTGACTTCGGTTGGGGAAGGTCGT
ATTGAGGTCACCTGGTGGTGCCGAATGGCAGCTGCCCAGACCCTTGCGAC
AAATCCACAAAATGCAAGTGAGGATAGATCACGTATATGTTGTGTATCAA
GTGAAACATGTAAACCCTGCTTCAATTCAGCGCTAGAAAGGCTGCCATTG
CGGGTAATTTCTGACCAATTAAAAACATAATCATAAAATAAATAAAAAAC
AGCAATGCAGACTTGGCCAACTTACGGTTTACTAGTACGGAACTACGGTA
CTCATAGACCGCCACATTAAAAATGGAAAGATTTATCAAGACCTTCTAAG
GAATATCTTGAACACCTGGATATCTTAAGTTTGCCTTCCTCTGGTATTCC
TGATGCGGCATTGGTATATCTCTTTAAATTTTTTATTTTTCTAATTTTGT
TTTTTAAATTTTGTTTTTTCTTATTTTTTCAATTTTCTAATTTTTCAAAT
TTAGCCTTTTTCAAATTGGTAGTCGTTGGGTACACGGCGGACTCATGAGA
TTTGACGTTACATCATGTCATTAATTGTTTCATCATGTTTATGGATTTTT
GTACTTATCAACATCAAAAATAATAATGTATCAATGTATTTTCTTAAGGC
CCCAGAGAAGAGAGCAGCTGCCCTGAAGGTAAGCCGTCAACATAAAAGCA
ATCTGATTTTTTACCTTTTACATAGTAAGCTACATGTTTGATTTCCTAAT
TCTGTGAAATATATAGTTTGTATGTCGTTTTCTACTAGACAGTACCTTGT
ATATCGTGATGTCAAGTGCACGCTACTGGAAAGGGTTGCAGTCCGTAGGA
CGGGCCGTTAAGCCAAGGTTCTCTGTTTCTTGTACTTGTCGAAAAGATCA
AAGGGGCATAGTTCTACTTTAAGCTAATCTGGTTCGAGATCACTTTCACT
TTTAATTCTTTTTTTCAGAAACGTGTGGACTGTCATCATTTCGTCACGTC
CCCCAGACTGATTGTGGGGGAGTTCCAGACGACATAGATGGACATGTACG
TGTCACCCTTCAGTTCTGCGCAGACGCTTGCTGCGCAGACTCGACATGCC
TGTCGTTTCAGTTCAACTCTGTATCCACCTGCATCTTGAAGAGAAAACTC
TGCTCTGCTGACAAGCAAGTGTCTACAACCGGCAACATGTACGATGGGCT
TCATGTTCAAGGTTGGTACATTAATGAAATCAATCCATTCTATGTCTGTC
TATACGAACGTAAGCAAAAACACTTGGACATGACCTATAGACAAGGGATC
TGTACGCAATGTACCTTATGTCATACTTAGGCAGGGATAAATTTCGATAC
GGGTGTTCCGGACAGGATGATATATATAGAATACAACACGGGGTATTCCC
TATCACCCGAGGAACCAGCCCGACGGCCGGAGGGCGATCCGACCCGCGGG
AGGGCTGGAACCGAGGGGGATCAACGTGTTGTAATGTGTCATACCTTGGT
CACACCCACCCGAGAAAACACACATTTCAATGCGAAATGCACCAGAAGTT
GAGGGAGTTTCGTGTCCTCGAACACAAAACTGCAACAACATTGATTCTAA
CCTCCGAATTCGGTATTCGAATTTCCGACGGCGGCGCAACCGGCGCGCTC
GAAATGCATTCGAAATATTCTATGGAAGCCTGTGTGATAACACTCCCGAA
CCCTATGTGATCCGGATAGTTATCACATGGTCCGGAACGCCCAGGCATGA
CATAATTTGGGTTGTCACACGGGCTTATACTTTTATCACACGGTCTTCCA
TGAAATATTTCGAACCCACTTCGCGTGCGCCGTTTGCGCCGCTGTCGAAA
ATTCGAATACCGGATTCAGACGTTAGGACTGCTGTTGCTACTATTTTTGT
TCGAGGACCCCAACTTTTCGCAACTTCTGGCCAGGGGCATTTTGCATTGA
AATATGTATTCTGTCTCACTCTGAGACTGAGAAAGATGCGGAATACAGCG
TGTTGTATTCTACATTTATGCAACTGCTATGCGAACCCAGATACAGTTAT
CGATTCACTTGCTTTACTTACTCTTTGTTTTTCTATCTACCAGAATCATG
CCAGGTGGGAAATGGAGCATCCTACCGAGGAACACTATCTGAGACCGCGA
CAGGAAAAACGTGTCAACGCTGGGACAGTCAGACACCACATCAACACGAC
AGGACAGCCGCTAACTATCCTTCGGGCGGACTGGAGCAGAACTACTGCCG
GAATCCGGACGGCTGGTTCGGACTTTGGTGCTTCA Coding sequence (CDS) from alignment at Sc0000017:1561808..1566042+ >transcript:BL96500_cuf1 ID=transcript:BL96500_cuf1|Name=transcript:BL96500_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=5418bp|location=Sequence derived from alignment at Sc0000017:1561808..1566042+ (Branchiostoma lanceolatum)
CGAACACTGACCCTGTGTGAGGTCCAAGTCTTTTCAGGATCTGTCAGCAT
TCCCACTGGGTACACAGAACGAGCGGGGTCCTTCTATAAAGTCTTCCGGA
CCTGGAAGGACCACACCAGTGCACAACAGACGTGTGAAGCAGACGGGGGA
CATTTGGTTGTTATCAAGACAGCGTCTGTCAACACTTTCCTCATGACCTT
GATTTCGGACGCGGAGGACTACTGGATAGGGCTTAGTGATTACACAATTG
GAGGCACTTGGATGTGGTCTGATGGTACCAGACGGGACATGAGTTGTGAC
TTCACCAACTGGGCACCGGGTGAACCAACTAATGGTGGCCTATCTGGTGG
CCAGGACTGCGTTCATCTGTGGGGACTACTTGGCCACAAGTGGGATGACG
ACTACTGCTATAGAGGGAAATATTTCATCTGTCAAATCGGCCCCAGAGAA
GAGAGCAGCTGCCCTGAAGAAACGTGTGGACTGTCATCATTTCGTCACGT
CCCCCAGACTGATTGTGGGGGAGTTCCAGACGACATAGATGGACATGTAC
GTGTCACCCTTCAGTTCTGCGCAGACGCTTGCTGCGCAGACTCGACATGC
CTGTCGTTTCAGTTCAACTCTGTATCCACCTGCATCTTGAAGAGAAAACT
CTGCTCTGCTGACAAGCAAGTGTCTACAACCGGCAACATGTACGATGGGC
TTCATGTTCAAGAATCATGCCAGGTGGGAAATGGAGCATCCTACCGAGGA
ACACTATCTGAGACCGCGACAGGAAAAACGTGTCAACGCTGGGACAGTCA
GACACCACATCAACACGACAGGACAGCCGCTAACTATCCTTCGGGCGGAC
TGGAGCAGAACTACTGCCGGAATCCGGACGGCTGGTTCGGACTTTGGTGC
TTCCGAACACTGACCCTGTGTGAGGTCCAAGTCTTTTCAGGATCTGTCAG
CATTCCCACTGGGTACACAGAACGAGCGGGGTCCTTCTATAAAGTCTTCC
GGACCTGGAAGGACCACACCAGTGCACAACAGACGTGTGAAGCAGACGGG
GGACATTTGGTTGTTATCAAGACAGCGTCTGTCAACACTTTCCTCATGAC
CTTGATTTCGGACGCGGAGGACTACTGGATAGGGCTTAGTGATTACACAA
TTGGAGGCACTTGGATGTGGTCTGATGGTACCAGACGGGACATGAGTTGT
GACTTCACCAACTGGGCACCGGGTGAACCAACTAATGGTGGCCTATCTGG
TGGCCAGGACTGCGTTCATCTGTGGGGACTACTTGGCCACAAGTGGGATG
ACGACTACTGCTATAGAGGGAAATATTTCATCTGTCAAATCGGCCCCAGA
GAAGAGAGCAGCTGCCCTGAAGAAACGTGTGGACTGTCATCATTTCGTCA
CGTCCCCCAGACTGATTGTGGGGGAGTTCCAGACGACATAGATGGACATG
TACGTGTCACCCTTCAGTTCTGCGCAGACGCTTGCTGCGCAGACTCGACA
TGCCTGTCGTTTCAGTTCAACTCTGTATCCACCTGCATCTTGAAGAGAAA
ACTCTGCTCTGCTGACAAGCAAGTGTCTACAACCGGCAACATGTACGATG
GGCTTCATGTTCAAGAATCATGCCAGGTGGGAAATGGAGCATCCTACCGA
GGAACACTATCTGAGACCGCGACAGGAAAAACGTGTCAACGCTGGGACAG
TCAGACACCACATCAACACGACAGGACAGCCGCTAACTATCCTTCGGGCG
GACTGGAGCAGAACTACTGCCGGAATCCGGACGGCTGGTTCGGACTTTGG
TGCTTCCGAACACTGACCCTGTGTGAGGTCCAAGTCTTTTCAGGATCTGT
CAGCATTCCCACTGGGTACACAGAACGAGCGGGGTCCTTCTATAAAGTCT
TCCGGACCTGGAAGGACCACACCAGTGCACAACAGACGTGTGAAGCAGAC
GGGGGACATTTGGTTGTTATCAAGACAGCGTCTGTCAACACTTTCCTCAT
GACCTTGATTTCGGACGCGGAGGACTACTGGATAGGGCTTAGTGATTACA
CAATTGGAGGCACTTGGATGTGGTCTGATGGTACCAGACGGGACATGAGT
TGTGACTTCACCAACTGGGCACCGGGTGAACCAACTAATGGTGGCCTATC
TGGTGGCCAGGACTGCGTTCATCTGTGGGGACTACTTGGCCACAAGTGGG
ATGACGACTACTGCTATAGAGGGAAATATTTCATCTGTCAAATCGGCCCC
AGAGAAGAGAGCAGCTGCCCTGAAGAAACGTGTGGACTGTCATCATTTCG
TCACGTCCCCCAGACTGATTGTGGGGGAGTTCCAGACGACATAGATGGAC
ATGTACGTGTCACCCTTCAGTTCTGCGCAGACGCTTGCTGCGCAGACTCG
ACATGCCTGTCGTTTCAGTTCAACTCTGTATCCACCTGCATCTTGAAGAG
AAAACTCTGCTCTGCTGACAAGCAAGTGTCTACAACCGGCAACATGTACG
ATGGGCTTCATGTTCAAGAATCATGCCAGGTGGGAAATGGAGCATCCTAC
CGAGGAACACTATCTGAGACCGCGACAGGAAAAACGTGTCAACGCTGGGA
CAGTCAGACACCACATCAACACGACAGGACAGCCGCTAACTATCCTTCGG
GCGGACTGGAGCAGAACTACTGCCGGAATCCGGACGGCTGGTTCGGACTT
TGGTGCTTCCGAACACTGACCCTGTGTGAGGTCCAAGTCTTTTCAGGATC
TGTCAGCATTCCCACTGGGTACACAGAACGAGCGGGGTCCTTCTATAAAG
TCTTCCGGACCTGGAAGGACCACACCAGTGCACAACAGACGTGTGAAGCA
GACGGGGGACATTTGGTTGTTATCAAGACAGCGTCTGTCAACACTTTCCT
CATGACCTTGATTTCGGACGCGGAGGACTACTGGATAGGGCTTAGTGATT
ACACAATTGGAGGCACTTGGATGTGGTCTGATGGTACCAGACGGGACATG
AGTTGTGACTTCACCAACTGGGCACCGGGTGAACCAACTAATGGTGGCCT
ATCTGGTGGCCAGGACTGCGTTCATCTGTGGGGACTACTTGGCCACAAGT
GGGATGACGACTACTGCTATAGAGGGAAATATTTCATCTGTCAAATCGGC
CCCAGAGAAGAGAGCAGCTGCCCTGAAGAAACGTGTGGACTGTCATCATT
TCGTCACGTCCCCCAGACTGATTGTGGGGGAGTTCCAGACGACATAGATG
GACATGTACGTGTCACCCTTCAGTTCTGCGCAGACGCTTGCTGCGCAGAC
TCGACATGCCTGTCGTTTCAGTTCAACTCTGTATCCACCTGCATCTTGAA
GAGAAAACTCTGCTCTGCTGACAAGCAAGTGTCTACAACCGGCAACATGT
ACGATGGGCTTCATGTTCAAGAATCATGCCAGGTGGGAAATGGAGCATCC
TACCGAGGAACACTATCTGAGACCGCGACAGGAAAAACGTGTCAACGCTG
GGACAGTCAGACACCACATCAACACGACAGGACAGCCGCTAACTATCCTT
CGGGCGGACTGGAGCAGAACTACTGCCGGAATCCGGACGGCTGGTTCGGA
CTTTGGTGCTTCCGAACACTGACCCTGTGTGAGGTCCAAGTCTTTTCAGG
ATCTGTCAGCATTCCCACTGGGTACACAGAACGAGCGGGGTCCTTCTATA
AAGTCTTCCGGACCTGGAAGGACCACACCAGTGCACAACAGACGTGTGAA
GCAGACGGGGGACATTTGGTTGTTATCAAGACAGCGTCTGTCAACACTTT
CCTCATGACCTTGATTTCGGACGCGGAGGACTACTGGATAGGGCTTAGTG
ATTACACAATTGGAGGCACTTGGATGTGGTCTGATGGTACCAGACGGGAC
ATGAGTTGTGACTTCACCAACTGGGCACCGGGTGAACCAACTAATGGTGG
CCTATCTGGTGGCCAGGACTGCGTTCATCTGTGGGGACTACTTGGCCACA
AGTGGGATGACGACTACTGCTATAGAGGGAAATATTTCATCTGTCAAATC
GGCCCCAGAGAAGAGAGCAGCTGCCCTGAAGAAACGTGTGGACTGTCATC
ATTTCGTCACGTCCCCCAGACTGATTGTGGGGGAGTTCCAGACGACATAG
ATGGACATGTACGTGTCACCCTTCAGTTCTGCGCAGACGCTTGCTGCGCA
GACTCGACATGCCTGTCGTTTCAGTTCAACTCTGTATCCACCTGCATCTT
GAAGAGAAAACTCTGCTCTGCTGACAAGCAAGTGTCTACAACCGGCAACA
TGTACGATGGGCTTCATGTTCAAGAATCATGCCAGGTGGGAAATGGAGCA
TCCTACCGAGGAACACTATCTGAGACCGCGACAGGAAAAACGTGTCAACG
CTGGGACAGTCAGACACCACATCAACACGACAGGACAGCCGCTAACTATC
CTTCGGGCGGACTGGAGCAGAACTACTGCCGGAATCCGGACGGCTGGTTC
GGACTTTGGTGCTTCCGAACACTGACCCTGTGTGAGGTCCAAGTCTTTTC
AGGATCTGTCAGCATTCCCACTGGGTACACAGAACGAGCGGGGTCCTTCT
ATAAAGTCTTCCGGACCTGGAAGGACCACACCAGTGCACAACAGACGTGT
GAAGCAGACGGGGGACATTTGGTTGTTATCAAGACAGCGTCTGTCAACAC
TTTCCTCATGACCTTGATTTCGGACGCGGAGGACTACTGGATAGGGCTTA
GTGATTACACAATTGGAGGCACTTGGATGTGGTCTGATGGTACCAGACGG
GACATGAGTTGTGACTTCACCAACTGGGCACCGGGTGAACCAACTAATGG
TGGCCTATCTGGTGGCCAGGACTGCGTTCATCTGTGGGGACTACTTGGCC
ACAAGTGGGATGACGACTACTGCTATAGAGGGAAATATTTCATCTGTCAA
ATCGGCCCCAGAGAAGAGAGCAGCTGCCCTGAAGAAACGTGTGGACTGTC
ATCATTTCGTCACGTCCCCCAGACTGATTGTGGGGGAGTTCCAGACGACA
TAGATGGACATGTACGTGTCACCCTTCAGTTCTGCGCAGACGCTTGCTGC
GCAGACTCGACATGCCTGTCGTTTCAGTTCAACTCTGTATCCACCTGCAT
CTTGAAGAGAAAACTCTGCTCTGCTGACAAGCAAGTGTCTACAACCGGCA
ACATGTACGATGGGCTTCATGTTCAAGAATCATGCCAGGTGGGAAATGGA
GCATCCTACCGAGGAACACTATCTGAGACCGCGACAGGAAAAACGTGTCA
ACGCTGGGACAGTCAGACACCACATCAACACGACAGGACAGCCGCTAACT
ATCCTTCGGGCGGACTGGAGCAGAACTACTGCCGGAATCCGGACGGCTGG
TTCGGACTTTGGTGCTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000017 | genome | Sc0000017:1561808..1566042 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96500_cuf1 |
| Biotype | protein_coding |
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