transcript:BL96512_cuf6 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96512_cuf6
Unique Nametranscript:BL96512_cuf6
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96512_cuf6

>transcript:BL96512_cuf6-protein ID=transcript:BL96512_cuf6-protein|Name=transcript:BL96512_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=151bp
QEYRDTLPLKEVSPEMTGDTEWSLRLPGEGKYLCRRTDLGVVTPYPLHVT
YRSANWSDNWQQVGEWMPVGPLFSIQCEDVEGPVDILLPHVLHVSKGNEP
DKERVRVVHVAGKEANLLPVSEVTSAHIVTRFQKGSLFGPVVETVYEKLF
A
Run BLAST on NCBI

mRNA from alignment at Sc0000006:6452066..6453008+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96512_cuf6 ID=transcript:BL96512_cuf6|Name=transcript:BL96512_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=943bp|location=Sequence derived from alignment at Sc0000006:6452066..6453008+ (Branchiostoma lanceolatum)
CCAGGAATACCGTGATACCTTGCCACTAAAAGAGGTCAGTCCTGAGATGA
CCGGAGACACAGAATGGTGAGTAGCATGTACGGATCCAATGTAACTTGGT
AAACTGCAATGCTAAACTCCTACTTGCATAACAGGTTACAGAAGTAAAGA
AAAAATACATTGGCGGTTACCAAAGCAGACGCACGTGTGATCGTAGGCTT
CGTTTAAGCTTGGCGCTCAGTACAATAAAGTATAAATTGTTTCCCTTGTA
TTATCAGCCATACACTGTTACAGAGTTGGAGCACATGTGAAGACGCCTAG
GATACATGTGTTTATCTCCTCAGGTCCCTCCGGCTGCCAGGTGAAGGGAA
GTACCTGTGCAGACGGACCGACCTGGGCGTGGTGACGCCCTACCCGCTGC
ACGTGACCTACAGGAGTGCGAACTGGTCCGACAACTGGCAGCAGGTGGGG
GAATGGATGCCGGTGGGTCCGCTCTTCTCCATCCAGTGTGAGGATGTGGA
GGGGCCGGTGGACATCCTACTGCCGCACGTGCTGCACGTCAGTAAAGGCA
ATGGTTTGTTTTCTATACTATTTCTCTGTTCAATTCAAAACCAATCATTG
ATGGAGCTGCAACGAAAGAGTCTGAAAATCGATAAACTGAAGGCTGGCTG
ACAATGTCGTCCATTTATGCGCAAGTTGGCGTTGTTGAGCTGTGGCGAAT
TATTTTTAAGTTAATTATTTTCTTCAAATATACTATCTACAGCTATTGTA
GTTATTTTTACATTCCTTTTCGTGTGCTTACCAGAACCCGACAAGGAGCG
CGTGCGAGTTGTCCATGTTGCCGGGAAAGAAGCGAATCTTCTTCCCGTTT
CTGAGGTGACGTCAGCCCACATCGTGACCAGGTTCCAGAAGGGCAGTCTG
TTCGGTCCCGTGGTGGAGACAGTCTACGAGAAGCTGTTTGCCA

Coding sequence (CDS) from alignment at Sc0000006:6452066..6453008+

>transcript:BL96512_cuf6 ID=transcript:BL96512_cuf6|Name=transcript:BL96512_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=453bp|location=Sequence derived from alignment at Sc0000006:6452066..6453008+ (Branchiostoma lanceolatum)
CAGGAATACCGTGATACCTTGCCACTAAAAGAGGTCAGTCCTGAGATGAC
CGGAGACACAGAATGGTCCCTCCGGCTGCCAGGTGAAGGGAAGTACCTGT
GCAGACGGACCGACCTGGGCGTGGTGACGCCCTACCCGCTGCACGTGACC
TACAGGAGTGCGAACTGGTCCGACAACTGGCAGCAGGTGGGGGAATGGAT
GCCGGTGGGTCCGCTCTTCTCCATCCAGTGTGAGGATGTGGAGGGGCCGG
TGGACATCCTACTGCCGCACGTGCTGCACGTCAGTAAAGGCAATGAACCC
GACAAGGAGCGCGTGCGAGTTGTCCATGTTGCCGGGAAAGAAGCGAATCT
TCTTCCCGTTTCTGAGGTGACGTCAGCCCACATCGTGACCAGGTTCCAGA
AGGGCAGTCTGTTCGGTCCCGTGGTGGAGACAGTCTACGAGAAGCTGTTT
GCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96512gene:BL96512Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96512_cuf6transcript:BL96512_cuf6-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96512_cuf6-E1BL96512_cuf6-E1-1564476830-71814Branchiostoma lanceolatumexon
BL96512_cuf6-E2BL96512_cuf6-E2-1564476830-71816Branchiostoma lanceolatumexon
BL96512_cuf6-E3BL96512_cuf6-E3-1564476830-71819Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000006genomeSc0000006:6452066..6453008 +
Properties
Property NameValue
Transcript idBL96512_cuf6
Biotypeprotein_coding